Genomic map of Pectobacterium phage PPWS1 (LC063634)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
LC063634
Definition
Pectobacterium phage PPWS1 DNA, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Corkvirinae; Kotilavirus; Pectobacterium virus PPWS1.
DB of origin
PVOG
Length
44539
Host Name
Pectobacterium carotovorum
Host domain
Bacteria
Is prophage?
undef
Number of proteins
55
%GC
51.06
Number of singletons
8
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
BAS69518.1 LC063634_p3 hypothetical protein singleton unknown function unknown function 1 2575 2787
BAS69549.1 LC063634_p34 hypothetical protein phrog_1035 endonuclease VII DNA, RNA and nucleotide metabolism 1 21586 22092
BAS69553.1 LC063634_p38 hypothetical protein phrog_3112 virion structural protein head and packaging 1 23576 23908
BAS69569.1 LC063634_p54 structural protein phrog_20911 tail spike protein tail 1 42430 43980
BAS69517.1 LC063634_p2 hypothetical protein phrog_5277 unknown function unknown function 1 1960 2511
BAS69533.1 LC063634_p18 DNA polymerase phrog_9556 DNA polymerase DNA, RNA and nucleotide metabolism 1 11006 12412
BAS69557.1 LC063634_p42 tail tubular protein A phrog_446 tail protein tail 1 27349 27906
BAS69538.1 LC063634_p23 phage DNA Exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 15352 16404
BAS69564.1 LC063634_p49 DNA maturase B phrog_38 terminase large subunit head and packaging 1 39217 41031
BAS69522.1 LC063634_p7 peptidase phrog_4191 peptidase other 1 5232 6206
BAS69535.1 LC063634_p20 DNA polymerase phrog_2573 DNA polymerase DNA, RNA and nucleotide metabolism 1 13226 14050
BAS69531.1 LC063634_p16 hypothetical protein phrog_34077 unknown function unknown function 1 10427 10729
BAS69544.1 LC063634_p29 polynucleotide 5' kinase/3' phosphatase phrog_415 polynucleotide kinase other 1 18533 19015
BAS69550.1 LC063634_p35 RNA polymerase phrog_2051 RNA polymerase DNA, RNA and nucleotide metabolism 1 22295 22900
BAS69546.1 LC063634_p31 hypothetical protein phrog_16324 unknown function unknown function 1 19514 19699
BAS69527.1 LC063634_p12 hypothetical protein phrog_19629 unknown function unknown function 1 8017 8316
BAS69555.1 LC063634_p40 scaffolding protein phrog_1018 head scaffolding protein head and packaging 1 25422 26282
BAS69542.1 LC063634_p27 hypothetical protein phrog_21729 unknown function unknown function 1 17152 17370
BAS69560.1 LC063634_p45 hypothetical protein phrog_2083 internal virion lysozyme motif head and packaging 1 30866 33586
BAS69528.1 LC063634_p13 DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 8325 9587
BAS69525.1 LC063634_p10 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 7101 7904
BAS69552.1 LC063634_p37 hypothetical protein phrog_5167 unknown function unknown function 1 23170 23583
BAS69559.1 LC063634_p44 internal virion protein phrog_4295 internal virion protein head and packaging 1 30245 30856
BAS69545.1 LC063634_p30 hypothetical protein phrog_19680 unknown function unknown function 1 19015 19539
BAS69516.1 LC063634_p1 hypothetical protein singleton unknown function unknown function 1 1410 1589
BAS69567.1 LC063634_p52 holin phrog_20 holin lysis 1 41615 41881
BAS69566.1 LC063634_p51 RzlA (u-spanin) phrog_1804 Rz-like spanin lysis 1 41239 41622
BAS69530.1 LC063634_p15 nucleotidyl transferase phrog_1614 nucleotidyltransferase DNA, RNA and nucleotide metabolism 1 9837 10382
BAS69562.1 LC063634_p47 tail fiber protein phrog_11393 tail fiber protein tail 1 37298 38914
BAS69534.1 LC063634_p19 HNH endonuclease inducing intron mobility phrog_7545 HNH endonuclease DNA, RNA and nucleotide metabolism 1 12505 13050
BAS69561.1 LC063634_p46 internal core protein phrog_342 internal virion protein with endolysin domain head and packaging 1 33596 37288
BAS69554.1 LC063634_p39 head-tail connector protein phrog_449 head-tail adaptor connector 1 23911 25419
BAS69521.1 LC063634_p6 hypothetical protein phrog_13313 unknown function unknown function 1 3509 5248
BAS69524.1 LC063634_p9 HNH endonuclease family protein phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 6650 7162
BAS69540.1 LC063634_p25 hypothetical protein singleton unknown function unknown function 1 16522 16749
BAS69565.1 LC063634_p50 hypothetical protein phrog_17528 unknown function unknown function 1 41041 41229
BAS69536.1 LC063634_p21 structural protein phrog_862 unknown function unknown function 1 14066 14908
BAS69547.1 LC063634_p32 RNA polymerase phrog_2166 N4-like RNA polymerase DNA, RNA and nucleotide metabolism 1 19707 21494
BAS69551.1 LC063634_p36 hypothetical protein phrog_5394 unknown function unknown function 1 22995 23195
BAS69558.1 LC063634_p43 tail tubular protein B phrog_457 tail protein tail 1 27918 30248
BAS69541.1 LC063634_p26 DNA endonuclease VII phrog_423 endonuclease VII DNA, RNA and nucleotide metabolism 1 16746 17171
BAS69570.1 LC063634_p55 hypothetical protein singleton unknown function unknown function 1 43980 44267
BAS69548.1 LC063634_p33 hypothetical protein singleton unknown function unknown function 1 21494 21625
BAS69532.1 LC063634_p17 hypothetical protein phrog_15093 unknown function unknown function 1 10726 10950
BAS69537.1 LC063634_p22 protein 7.7 phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 14922 15410
BAS69520.1 LC063634_p5 hypothetical protein phrog_6167 unknown function unknown function 1 3160 3504
BAS69556.1 LC063634_p41 capsid protein phrog_267 major head protein head and packaging 1 26297 27283
BAS69519.1 LC063634_p4 hypothetical protein singleton unknown function unknown function 1 2842 3006
BAS69529.1 LC063634_p14 hypothetical protein singleton unknown function unknown function 1 9574 9762
BAS69523.1 LC063634_p8 hypothetical protein phrog_4317 unknown function unknown function 1 6193 6657
BAS69539.1 LC063634_p24 hypothetical protein singleton unknown function unknown function 1 16343 16525
BAS69526.1 LC063634_p11 hypothetical protein phrog_20064 unknown function unknown function 1 7874 8017
BAS69543.1 LC063634_p28 phosphoesterase phrog_221 metallo-phosphoesterase other 1 17357 18331
BAS69568.1 LC063634_p53 endolysin phrog_7 endolysin lysis 1 41865 42419
BAS69563.1 LC063634_p48 DNA maturase A phrog_891 terminase small subunit head and packaging 1 38924 39208