| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
LC063634 |
Definition |
Pectobacterium phage PPWS1 DNA, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Corkvirinae; Kotilavirus; Pectobacterium virus PPWS1. |
DB of origin |
PVOG |
Length |
44539 |
Host Name |
Pectobacterium carotovorum |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
55 |
%GC |
51.06 |
Number of singletons |
8 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| BAS69518.1 | LC063634_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2575 | 2787 |
| BAS69549.1 | LC063634_p34 | hypothetical protein | phrog_1035 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 21586 | 22092 |
| BAS69553.1 | LC063634_p38 | hypothetical protein | phrog_3112 | virion structural protein | head and packaging | 1 | 23576 | 23908 |
| BAS69569.1 | LC063634_p54 | structural protein | phrog_20911 | tail spike protein | tail | 1 | 42430 | 43980 |
| BAS69517.1 | LC063634_p2 | hypothetical protein | phrog_5277 | unknown function | unknown function | 1 | 1960 | 2511 |
| BAS69533.1 | LC063634_p18 | DNA polymerase | phrog_9556 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 11006 | 12412 |
| BAS69557.1 | LC063634_p42 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 27349 | 27906 |
| BAS69538.1 | LC063634_p23 | phage DNA Exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 15352 | 16404 |
| BAS69564.1 | LC063634_p49 | DNA maturase B | phrog_38 | terminase large subunit | head and packaging | 1 | 39217 | 41031 |
| BAS69522.1 | LC063634_p7 | peptidase | phrog_4191 | peptidase | other | 1 | 5232 | 6206 |
| BAS69535.1 | LC063634_p20 | DNA polymerase | phrog_2573 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 13226 | 14050 |
| BAS69531.1 | LC063634_p16 | hypothetical protein | phrog_34077 | unknown function | unknown function | 1 | 10427 | 10729 |
| BAS69544.1 | LC063634_p29 | polynucleotide 5' kinase/3' phosphatase | phrog_415 | polynucleotide kinase | other | 1 | 18533 | 19015 |
| BAS69550.1 | LC063634_p35 | RNA polymerase | phrog_2051 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 22295 | 22900 |
| BAS69546.1 | LC063634_p31 | hypothetical protein | phrog_16324 | unknown function | unknown function | 1 | 19514 | 19699 |
| BAS69527.1 | LC063634_p12 | hypothetical protein | phrog_19629 | unknown function | unknown function | 1 | 8017 | 8316 |
| BAS69555.1 | LC063634_p40 | scaffolding protein | phrog_1018 | head scaffolding protein | head and packaging | 1 | 25422 | 26282 |
| BAS69542.1 | LC063634_p27 | hypothetical protein | phrog_21729 | unknown function | unknown function | 1 | 17152 | 17370 |
| BAS69560.1 | LC063634_p45 | hypothetical protein | phrog_2083 | internal virion lysozyme motif | head and packaging | 1 | 30866 | 33586 |
| BAS69528.1 | LC063634_p13 | DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 8325 | 9587 |
| BAS69525.1 | LC063634_p10 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 7101 | 7904 |
| BAS69552.1 | LC063634_p37 | hypothetical protein | phrog_5167 | unknown function | unknown function | 1 | 23170 | 23583 |
| BAS69559.1 | LC063634_p44 | internal virion protein | phrog_4295 | internal virion protein | head and packaging | 1 | 30245 | 30856 |
| BAS69545.1 | LC063634_p30 | hypothetical protein | phrog_19680 | unknown function | unknown function | 1 | 19015 | 19539 |
| BAS69516.1 | LC063634_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1410 | 1589 |
| BAS69567.1 | LC063634_p52 | holin | phrog_20 | holin | lysis | 1 | 41615 | 41881 |
| BAS69566.1 | LC063634_p51 | RzlA (u-spanin) | phrog_1804 | Rz-like spanin | lysis | 1 | 41239 | 41622 |
| BAS69530.1 | LC063634_p15 | nucleotidyl transferase | phrog_1614 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | 1 | 9837 | 10382 |
| BAS69562.1 | LC063634_p47 | tail fiber protein | phrog_11393 | tail fiber protein | tail | 1 | 37298 | 38914 |
| BAS69534.1 | LC063634_p19 | HNH endonuclease inducing intron mobility | phrog_7545 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 12505 | 13050 |
| BAS69561.1 | LC063634_p46 | internal core protein | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 33596 | 37288 |
| BAS69554.1 | LC063634_p39 | head-tail connector protein | phrog_449 | head-tail adaptor | connector | 1 | 23911 | 25419 |
| BAS69521.1 | LC063634_p6 | hypothetical protein | phrog_13313 | unknown function | unknown function | 1 | 3509 | 5248 |
| BAS69524.1 | LC063634_p9 | HNH endonuclease family protein | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 6650 | 7162 |
| BAS69540.1 | LC063634_p25 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16522 | 16749 |
| BAS69565.1 | LC063634_p50 | hypothetical protein | phrog_17528 | unknown function | unknown function | 1 | 41041 | 41229 |
| BAS69536.1 | LC063634_p21 | structural protein | phrog_862 | unknown function | unknown function | 1 | 14066 | 14908 |
| BAS69547.1 | LC063634_p32 | RNA polymerase | phrog_2166 | N4-like RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 19707 | 21494 |
| BAS69551.1 | LC063634_p36 | hypothetical protein | phrog_5394 | unknown function | unknown function | 1 | 22995 | 23195 |
| BAS69558.1 | LC063634_p43 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 27918 | 30248 |
| BAS69541.1 | LC063634_p26 | DNA endonuclease VII | phrog_423 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 16746 | 17171 |
| BAS69570.1 | LC063634_p55 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43980 | 44267 |
| BAS69548.1 | LC063634_p33 | hypothetical protein | singleton | unknown function | unknown function | 1 | 21494 | 21625 |
| BAS69532.1 | LC063634_p17 | hypothetical protein | phrog_15093 | unknown function | unknown function | 1 | 10726 | 10950 |
| BAS69537.1 | LC063634_p22 | protein 7.7 | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 14922 | 15410 |
| BAS69520.1 | LC063634_p5 | hypothetical protein | phrog_6167 | unknown function | unknown function | 1 | 3160 | 3504 |
| BAS69556.1 | LC063634_p41 | capsid protein | phrog_267 | major head protein | head and packaging | 1 | 26297 | 27283 |
| BAS69519.1 | LC063634_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2842 | 3006 |
| BAS69529.1 | LC063634_p14 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9574 | 9762 |
| BAS69523.1 | LC063634_p8 | hypothetical protein | phrog_4317 | unknown function | unknown function | 1 | 6193 | 6657 |
| BAS69539.1 | LC063634_p24 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16343 | 16525 |
| BAS69526.1 | LC063634_p11 | hypothetical protein | phrog_20064 | unknown function | unknown function | 1 | 7874 | 8017 |
| BAS69543.1 | LC063634_p28 | phosphoesterase | phrog_221 | metallo-phosphoesterase | other | 1 | 17357 | 18331 |
| BAS69568.1 | LC063634_p53 | endolysin | phrog_7 | endolysin | lysis | 1 | 41865 | 42419 |
| BAS69563.1 | LC063634_p48 | DNA maturase A | phrog_891 | terminase small subunit | head and packaging | 1 | 38924 | 39208 |