Genomic map of Pseudomonas phage phiR18 (LC102729)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
LC102729
Definition
Pseudomonas phage R18 DNA, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Kochitakasuvirus; Pseudomonas virus R18.
DB of origin
PVOG
Length
63560
Host Name
Pseudomonas
Host domain
Bacteria
Is prophage?
undef
Number of proteins
86
%GC
60.34
Number of singletons
5
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
BAU16352.1 LC102729_p24 hypothetical protein phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 16865 18829
BAU16357.1 LC102729_p29 hypothetical protein phrog_37977 unknown function unknown function -1 22098 22370
BAU16385.1 LC102729_p57 hypothetical protein phrog_29412 unknown function unknown function -1 36048 36374
BAU16396.1 LC102729_p68 Phage terminase phrog_38 terminase large subunit head and packaging 1 41694 43565
BAU16354.1 LC102729_p26 hypothetical protein phrog_38800 unknown function unknown function -1 20213 20515
BAU16371.1 LC102729_p43 hypothetical protein phrog_34070 unknown function unknown function -1 29585 29995
BAU16345.1 LC102729_p17 hypothetical protein phrog_35651 unknown function unknown function -1 13197 13703
BAU16362.1 LC102729_p34 hypothetical protein phrog_34463 unknown function unknown function -1 25909 26121
BAU16400.1 LC102729_p72 hypothetical protein phrog_334 major head protein head and packaging 1 47100 48230
BAU16398.1 LC102729_p70 hypothetical protein phrog_32348 unknown function unknown function 1 45758 46918
BAU16378.1 LC102729_p50 hypothetical protein singleton unknown function unknown function -1 32830 33018
BAU16332.1 LC102729_p4 hypothetical protein phrog_4368 unknown function unknown function 1 6888 7403
BAU16408.1 LC102729_p80 hypothetical protein phrog_8123 unknown function unknown function 1 52839 53354
BAU16407.1 LC102729_p79 hypothetical protein phrog_8040 head closure Hc3 connector 1 51653 52849
BAU16342.1 LC102729_p14 hypothetical protein phrog_11457 unknown function unknown function -1 12000 12170
BAU16330.1 LC102729_p2 hypothetical protein phrog_1084 unknown function unknown function 1 5619 6212
BAU16413.1 LC102729_p85 hypothetical protein phrog_35998 photosystem II D1 moron, auxiliary metabolic gene and host takeover 1 58578 59750
BAU16397.1 LC102729_p69 hypothetical protein phrog_156 portal protein head and packaging 1 43579 45765
BAU16333.1 LC102729_p5 hypothetical protein phrog_7980 unknown function unknown function 1 7412 7618
BAU16415.1 LC102729_p1 hypothetical protein phrog_30152 virion structural protein head and packaging 1 62291 63560
BAU16415.1 LC102729_p1 hypothetical protein phrog_30152 virion structural protein head and packaging 1 1 5054
BAU16381.1 LC102729_p53 hypothetical protein phrog_33332 unknown function unknown function -1 33824 34129
BAU16379.1 LC102729_p51 hypothetical protein phrog_3786 unknown function unknown function -1 33015 33266
BAU16347.1 LC102729_p19 hypothetical protein phrog_27714 unknown function unknown function -1 14531 15409
BAU16409.1 LC102729_p81 hypothetical protein phrog_3758 virion structural protein head and packaging 1 53365 53808
BAU16406.1 LC102729_p78 Lytic enzyme phrog_181 endolysin lysis 1 51033 51656
BAU16391.1 LC102729_p63 hypothetical protein phrog_34001 unknown function unknown function -1 39171 39401
BAU16358.1 LC102729_p30 hypothetical protein phrog_13898 unknown function unknown function -1 22351 22689
BAU16367.1 LC102729_p39 hypothetical protein phrog_20892 unknown function unknown function -1 27036 27371
BAU16339.1 LC102729_p11 hypothetical protein phrog_28211 unknown function unknown function -1 9780 10484
BAU16410.1 LC102729_p82 hypothetical protein phrog_26502 virion structural protein head and packaging 1 53808 55670
BAU16366.1 LC102729_p38 hypothetical protein singleton unknown function unknown function -1 26947 27039
BAU16353.1 LC102729_p25 hypothetical protein phrog_62 DNA helicase DNA, RNA and nucleotide metabolism -1 18841 20202
BAU16346.1 LC102729_p18 hypothetical protein phrog_33396 unknown function unknown function -1 13761 14291
BAU16376.1 LC102729_p48 hypothetical protein phrog_36600 unknown function unknown function -1 32254 32556
BAU16364.1 LC102729_p36 hypothetical protein phrog_34621 unknown function unknown function -1 26361 26717
BAU16414.1 LC102729_p86 hypothetical protein phrog_29954 virion structural protein head and packaging 1 59765 62233
BAU16386.1 LC102729_p58 hypothetical protein phrog_37200 unknown function unknown function -1 36385 36588
BAU16405.1 LC102729_p77 hypothetical protein phrog_37546 unknown function unknown function 1 50921 51046
BAU16389.1 LC102729_p61 hypothetical protein phrog_37528 unknown function unknown function -1 38627 38824
BAU16412.1 LC102729_p84 hypothetical protein phrog_36971 unknown function unknown function 1 57622 58578
BAU16368.1 LC102729_p40 hypothetical protein phrog_34063 unknown function unknown function -1 27400 27732
BAU16380.1 LC102729_p52 hypothetical protein phrog_4405 unknown function unknown function -1 33269 33811
BAU16355.1 LC102729_p27 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 20512 21240
BAU16363.1 LC102729_p35 hypothetical protein phrog_33991 unknown function unknown function -1 26118 26339
BAU16356.1 LC102729_p28 hypothetical protein phrog_15487 DNA polymerase DNA, RNA and nucleotide metabolism -1 21327 22088
BAU16404.1 LC102729_p76 hypothetical protein singleton unknown function unknown function -1 50122 50937
BAU16411.1 LC102729_p83 hypothetical protein phrog_37070 unknown function unknown function 1 55670 57619
BAU16387.1 LC102729_p59 hypothetical protein phrog_31667 unknown function unknown function -1 37266 37670
BAU16373.1 LC102729_p45 hypothetical protein phrog_29732 unknown function unknown function -1 30386 30994
BAU16383.1 LC102729_p55 hypothetical protein phrog_30688 unknown function unknown function -1 34679 34900
BAU16377.1 LC102729_p49 hypothetical protein phrog_37704 unknown function unknown function -1 32546 32827
BAU16348.1 LC102729_p20 D-alanyl-D-alanine carboxypeptidase phrog_13900 minor head protein head and packaging -1 15478 15882
BAU16338.1 LC102729_p10 Lytic enzyme phrog_38675 unknown function unknown function -1 9391 9783
BAU16351.1 LC102729_p23 hypothetical protein phrog_5293 unknown function unknown function -1 16634 16855
BAU16399.1 LC102729_p71 hypothetical protein singleton unknown function unknown function 1 46918 47037
BAU16370.1 LC102729_p42 hypothetical protein phrog_38716 unknown function unknown function -1 29322 29588
BAU16336.1 LC102729_p8 hypothetical protein phrog_2687 unknown function unknown function 1 8866 9093
BAU16331.1 LC102729_p3 hypothetical protein phrog_4368 unknown function unknown function 1 6209 6886
BAU16393.1 LC102729_p65 hypothetical protein phrog_322 unknown function unknown function 1 40143 40502
BAU16341.1 LC102729_p13 hypothetical protein phrog_29865 unknown function unknown function -1 11454 11996
BAU16388.1 LC102729_p60 hypothetical protein phrog_33077 unknown function unknown function -1 37759 38550
BAU16335.1 LC102729_p7 hypothetical protein phrog_2398 unknown function unknown function 1 8567 8869
BAU16394.1 LC102729_p66 hypothetical protein phrog_30094 unknown function unknown function 1 40508 40855
BAU16382.1 LC102729_p54 hypothetical protein phrog_1934 unknown function unknown function -1 34141 34674
BAU16359.1 LC102729_p31 hypothetical protein phrog_28801 unknown function unknown function -1 22686 22913
BAU16402.1 LC102729_p74 hypothetical protein phrog_2498 unknown function unknown function 1 48776 49225
BAU16361.1 LC102729_p33 hypothetical protein phrog_13551 unknown function unknown function -1 25457 25906
BAU16395.1 LC102729_p67 hypothetical protein phrog_29190 unknown function unknown function 1 41003 41713
BAU16344.1 LC102729_p16 hypothetical protein phrog_255 exonuclease DNA, RNA and nucleotide metabolism -1 12658 13197
BAU16365.1 LC102729_p37 hypothetical protein phrog_29498 unknown function unknown function -1 26725 26937
BAU16350.1 LC102729_p22 hypothetical protein phrog_3034 unknown function unknown function -1 16272 16637
BAU16369.1 LC102729_p41 Cell division protein FtsH phrog_10440 unknown function unknown function -1 27789 29264
BAU16360.1 LC102729_p32 hypothetical protein phrog_24712 unknown function unknown function -1 22910 25315
BAU16403.1 LC102729_p75 hypothetical protein phrog_399 structural protein head and packaging 1 49230 49889
BAU16343.1 LC102729_p15 hypothetical protein phrog_6851 unknown function unknown function -1 12419 12661
BAU16349.1 LC102729_p21 hypothetical protein singleton unknown function unknown function -1 15905 16090
BAU16390.1 LC102729_p62 hypothetical protein phrog_29112 unknown function unknown function -1 38821 39102
BAU16337.1 LC102729_p9 hypothetical protein phrog_35790 unknown function unknown function -1 9254 9394
BAU16372.1 LC102729_p44 hypothetical protein phrog_11852 unknown function unknown function -1 29976 30374
BAU16374.1 LC102729_p46 hypothetical protein phrog_27363 unknown function unknown function -1 31026 31691
BAU16392.1 LC102729_p64 hypothetical protein phrog_36130 unknown function unknown function 1 39707 40138
BAU16375.1 LC102729_p47 Cysteine desulfurase, SufS subfamily phrog_29605 unknown function unknown function -1 31695 32261
BAU16384.1 LC102729_p56 hypothetical protein phrog_29257 unknown function unknown function -1 34904 35980
BAU16401.1 LC102729_p73 hypothetical protein phrog_32685 unknown function unknown function 1 48267 48698
BAU16334.1 LC102729_p6 hypothetical protein phrog_2712 tail fiber protein tail 1 7611 8567
BAU16340.1 LC102729_p12 hypothetical protein phrog_3956 unknown function unknown function -1 10477 11457