Genomic map of Pectobacterium phage PPWS4 (LC216347)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
LC216347
Definition
Pectobacterium phage PPWS4 DNA, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Pektosvirus; Pectobacterium virus PPWS4.
DB of origin
NUCCORE
Length
39906
Host Name
Pectobacterium carotovorum
Host domain
Bacteria
Is prophage?
undef
Number of proteins
49
%GC
48.9
Number of singletons
9
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
BBA26427.1 LC216347_p12 hypothetical protein singleton unknown function unknown function 1 8266 8355
BBA26443.1 LC216347_p28 hypothetical protein phrog_2251 unknown function unknown function 1 17275 17538
BBA26423.1 LC216347_p8 hypothetical protein singleton unknown function unknown function 1 6656 6898
BBA26464.1 LC216347_p49 DNA packaging protein B phrog_38 terminase large subunit head and packaging 1 37416 39155
BBA26438.1 LC216347_p23 tRNA nucleotidyl transferase-related protein phrog_1614 nucleotidyltransferase DNA, RNA and nucleotide metabolism 1 13929 14459
BBA26435.1 LC216347_p20 hypothetical protein phrog_1950 unknown function unknown function 1 12916 13128
BBA26450.1 LC216347_p35 head to tail connection protein phrog_449 head-tail adaptor connector 1 19926 21545
BBA26444.1 LC216347_p29 5'-3' exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 17528 18466
BBA26463.1 LC216347_p48 Rz-like lysis protein phrog_1327 Rz-like spanin lysis 1 36968 37432
BBA26462.1 LC216347_p47 terminase small subunit phrog_1351 terminase small subunit head and packaging 1 36600 36869
BBA26436.1 LC216347_p21 hypothetical protein phrog_2254 unknown function unknown function 1 13151 13447
BBA26459.1 LC216347_p44 internal virion protein D phrog_342 internal virion protein with endolysin domain head and packaging 1 30279 34298
BBA26418.1 LC216347_p3 hypothetical protein phrog_25044 unknown function unknown function 1 1569 1865
BBA26451.1 LC216347_p36 capsid scaffolidng protein phrog_1052 head assembly head and packaging 1 21612 22547
BBA26458.1 LC216347_p43 internal virion protein C phrog_1339 internal virion protein head and packaging 1 27993 30254
BBA26419.1 LC216347_p4 seryl-threonyl protein kinase phrog_2828 serine-threonine kinase other 1 1889 3037
BBA26441.1 LC216347_p26 hypothetical protein phrog_1452 Gp5.5-like host HNS inhibition moron, auxiliary metabolic gene and host takeover 1 16798 17067
BBA26434.1 LC216347_p19 DNA primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 11047 12786
BBA26461.1 LC216347_p46 holin phrog_920 holin lysis 1 36392 36598
BBA26453.1 LC216347_p38 hypothetical protein singleton unknown function unknown function 1 23676 23828
BBA26422.1 LC216347_p7 hypothetical protein singleton unknown function unknown function 1 6448 6666
BBA26416.1 LC216347_p1 hypothetical protein singleton unknown function unknown function 1 180 347
BBA26429.1 LC216347_p14 nucleotide kinase phrog_4943 unknown function unknown function 1 8627 9109
BBA26440.1 LC216347_p25 hypothetical protein singleton unknown function unknown function 1 16626 16781
BBA26460.1 LC216347_p45 tail spike protein phrog_8460 tail fiber protein tail 1 34361 36373
BBA26432.1 LC216347_p17 endonuclease I phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 10115 10570
BBA26433.1 LC216347_p18 endolysin phrog_822 amidase lysis 1 10573 11022
BBA26446.1 LC216347_p31 hypothetical protein phrog_1447 unknown function unknown function 1 18742 18987
BBA26442.1 LC216347_p27 HNS binding protein phrog_1334 unknown function unknown function 1 17069 17278
BBA26428.1 LC216347_p13 hypothetical protein phrog_1777 unknown function unknown function 1 8368 8637
BBA26425.1 LC216347_p10 hypothetical protein singleton unknown function unknown function 1 7983 8075
BBA26426.1 LC216347_p11 hypothetical protein singleton unknown function unknown function 1 8075 8173
BBA26424.1 LC216347_p9 ATP-dependent DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 6904 7983
BBA26421.1 LC216347_p6 hypothetical protein phrog_9238 unknown function unknown function 1 5944 6342
BBA26449.1 LC216347_p34 homing endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 19516 19926
BBA26431.1 LC216347_p16 single-stranded DNA-binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 9420 10115
BBA26447.1 LC216347_p32 hypothetical protein phrog_1391 unknown function unknown function 1 18992 19228
BBA26457.1 LC216347_p42 internal virion protein B phrog_805 internal virion protein head and packaging 1 27395 27976
BBA26452.1 LC216347_p37 major capsid protein phrog_267 major head protein head and packaging 1 22621 23661
BBA26420.1 LC216347_p5 DNA-directed RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 3122 5794
BBA26454.1 LC216347_p39 tubular protein A phrog_446 tail protein tail 1 23899 24489
BBA26417.1 LC216347_p2 S-adenosyl-L-methionine hydrolase phrog_2226 SAM-dependent methyltransferase other 1 942 1385
BBA26439.1 LC216347_p24 DNA-directed DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 14456 16639
BBA26445.1 LC216347_p30 hypothetical protein singleton unknown function unknown function 1 18430 18543
BBA26448.1 LC216347_p33 tail assembly protein phrog_1320 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 19238 19519
BBA26430.1 LC216347_p15 inhibitor of host bacterial RNA polymerase phrog_1307 RNA polymerase inhibitor DNA, RNA and nucleotide metabolism 1 9099 9275
BBA26455.1 LC216347_p40 tubular protein B phrog_457 tail protein tail 1 24512 26893
BBA26456.1 LC216347_p41 internal virion protein A phrog_308 internal virion protein head and packaging 1 26982 27392
BBA26437.1 LC216347_p22 hypothetical protein phrog_4023 unknown function unknown function 1 13523 13945