| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
LC216347 |
Definition |
Pectobacterium phage PPWS4 DNA, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Pektosvirus; Pectobacterium virus PPWS4. |
DB of origin |
NUCCORE |
Length |
39906 |
Host Name |
Pectobacterium carotovorum |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
49 |
%GC |
48.9 |
Number of singletons |
9 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| BBA26427.1 | LC216347_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8266 | 8355 |
| BBA26443.1 | LC216347_p28 | hypothetical protein | phrog_2251 | unknown function | unknown function | 1 | 17275 | 17538 |
| BBA26423.1 | LC216347_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6656 | 6898 |
| BBA26464.1 | LC216347_p49 | DNA packaging protein B | phrog_38 | terminase large subunit | head and packaging | 1 | 37416 | 39155 |
| BBA26438.1 | LC216347_p23 | tRNA nucleotidyl transferase-related protein | phrog_1614 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | 1 | 13929 | 14459 |
| BBA26435.1 | LC216347_p20 | hypothetical protein | phrog_1950 | unknown function | unknown function | 1 | 12916 | 13128 |
| BBA26450.1 | LC216347_p35 | head to tail connection protein | phrog_449 | head-tail adaptor | connector | 1 | 19926 | 21545 |
| BBA26444.1 | LC216347_p29 | 5'-3' exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 17528 | 18466 |
| BBA26463.1 | LC216347_p48 | Rz-like lysis protein | phrog_1327 | Rz-like spanin | lysis | 1 | 36968 | 37432 |
| BBA26462.1 | LC216347_p47 | terminase small subunit | phrog_1351 | terminase small subunit | head and packaging | 1 | 36600 | 36869 |
| BBA26436.1 | LC216347_p21 | hypothetical protein | phrog_2254 | unknown function | unknown function | 1 | 13151 | 13447 |
| BBA26459.1 | LC216347_p44 | internal virion protein D | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 30279 | 34298 |
| BBA26418.1 | LC216347_p3 | hypothetical protein | phrog_25044 | unknown function | unknown function | 1 | 1569 | 1865 |
| BBA26451.1 | LC216347_p36 | capsid scaffolidng protein | phrog_1052 | head assembly | head and packaging | 1 | 21612 | 22547 |
| BBA26458.1 | LC216347_p43 | internal virion protein C | phrog_1339 | internal virion protein | head and packaging | 1 | 27993 | 30254 |
| BBA26419.1 | LC216347_p4 | seryl-threonyl protein kinase | phrog_2828 | serine-threonine kinase | other | 1 | 1889 | 3037 |
| BBA26441.1 | LC216347_p26 | hypothetical protein | phrog_1452 | Gp5.5-like host HNS inhibition | moron, auxiliary metabolic gene and host takeover | 1 | 16798 | 17067 |
| BBA26434.1 | LC216347_p19 | DNA primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 11047 | 12786 |
| BBA26461.1 | LC216347_p46 | holin | phrog_920 | holin | lysis | 1 | 36392 | 36598 |
| BBA26453.1 | LC216347_p38 | hypothetical protein | singleton | unknown function | unknown function | 1 | 23676 | 23828 |
| BBA26422.1 | LC216347_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6448 | 6666 |
| BBA26416.1 | LC216347_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 180 | 347 |
| BBA26429.1 | LC216347_p14 | nucleotide kinase | phrog_4943 | unknown function | unknown function | 1 | 8627 | 9109 |
| BBA26440.1 | LC216347_p25 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16626 | 16781 |
| BBA26460.1 | LC216347_p45 | tail spike protein | phrog_8460 | tail fiber protein | tail | 1 | 34361 | 36373 |
| BBA26432.1 | LC216347_p17 | endonuclease I | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 10115 | 10570 |
| BBA26433.1 | LC216347_p18 | endolysin | phrog_822 | amidase | lysis | 1 | 10573 | 11022 |
| BBA26446.1 | LC216347_p31 | hypothetical protein | phrog_1447 | unknown function | unknown function | 1 | 18742 | 18987 |
| BBA26442.1 | LC216347_p27 | HNS binding protein | phrog_1334 | unknown function | unknown function | 1 | 17069 | 17278 |
| BBA26428.1 | LC216347_p13 | hypothetical protein | phrog_1777 | unknown function | unknown function | 1 | 8368 | 8637 |
| BBA26425.1 | LC216347_p10 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7983 | 8075 |
| BBA26426.1 | LC216347_p11 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8075 | 8173 |
| BBA26424.1 | LC216347_p9 | ATP-dependent DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 6904 | 7983 |
| BBA26421.1 | LC216347_p6 | hypothetical protein | phrog_9238 | unknown function | unknown function | 1 | 5944 | 6342 |
| BBA26449.1 | LC216347_p34 | homing endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 19516 | 19926 |
| BBA26431.1 | LC216347_p16 | single-stranded DNA-binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 9420 | 10115 |
| BBA26447.1 | LC216347_p32 | hypothetical protein | phrog_1391 | unknown function | unknown function | 1 | 18992 | 19228 |
| BBA26457.1 | LC216347_p42 | internal virion protein B | phrog_805 | internal virion protein | head and packaging | 1 | 27395 | 27976 |
| BBA26452.1 | LC216347_p37 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 22621 | 23661 |
| BBA26420.1 | LC216347_p5 | DNA-directed RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 3122 | 5794 |
| BBA26454.1 | LC216347_p39 | tubular protein A | phrog_446 | tail protein | tail | 1 | 23899 | 24489 |
| BBA26417.1 | LC216347_p2 | S-adenosyl-L-methionine hydrolase | phrog_2226 | SAM-dependent methyltransferase | other | 1 | 942 | 1385 |
| BBA26439.1 | LC216347_p24 | DNA-directed DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 14456 | 16639 |
| BBA26445.1 | LC216347_p30 | hypothetical protein | singleton | unknown function | unknown function | 1 | 18430 | 18543 |
| BBA26448.1 | LC216347_p33 | tail assembly protein | phrog_1320 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 19238 | 19519 |
| BBA26430.1 | LC216347_p15 | inhibitor of host bacterial RNA polymerase | phrog_1307 | RNA polymerase inhibitor | DNA, RNA and nucleotide metabolism | 1 | 9099 | 9275 |
| BBA26455.1 | LC216347_p40 | tubular protein B | phrog_457 | tail protein | tail | 1 | 24512 | 26893 |
| BBA26456.1 | LC216347_p41 | internal virion protein A | phrog_308 | internal virion protein | head and packaging | 1 | 26982 | 27392 |
| BBA26437.1 | LC216347_p22 | hypothetical protein | phrog_4023 | unknown function | unknown function | 1 | 13523 | 13945 |