Genomic map of Streptococcus phage CP-7 (LK392619)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
LK392619
Definition
Streptococcus phage Cp-7, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Picovirinae; Cepunavirus; Streptococcus virus Cp7.
DB of origin
PVOG
Length
19741
Host Name
Streptococcus pneumoniae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
28
%GC
38.54
Number of singletons
5
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
CDS43821.1 LK392619_p20 Encapsidation protein phrog_2150 terminase head and packaging 1 15173 16219
CDS43815.1 LK392619_p14 hypothetical protein phrog_23584 unknown function unknown function 1 9002 9319
CDS43806.1 LK392619_p5 DNA polymerase phrog_1907 DNA polymerase DNA, RNA and nucleotide metabolism 1 2240 3946
CDS43819.1 LK392619_p18 Tail protein phrog_30532 tail protein tail 1 11695 13257
CDS43807.1 LK392619_p6 hypothetical protein phrog_26305 unknown function unknown function 1 3903 4349
CDS43824.1 LK392619_p23 hypothetical protein singleton unknown function unknown function -1 17718 18086
CDS43829.1 LK392619_p28 hypothetical protein phrog_16094 unknown function unknown function -1 19119 19367
CDS43827.1 LK392619_p26 hypothetical protein phrog_27339 unknown function unknown function -1 18615 18884
CDS43805.1 LK392619_p4 Terminal protein phrog_26145 unknown function unknown function 1 1551 2243
CDS43813.1 LK392619_p12 Neck protein phrog_26520 lower collar tail 1 7762 8409
CDS43825.1 LK392619_p24 hypothetical protein phrog_1027 unknown function unknown function -1 18091 18333
CDS43814.1 LK392619_p13 Appendage phrog_27791 unknown function unknown function 1 8421 9005
CDS43816.1 LK392619_p15 Head fiber singleton unknown function unknown function 1 9306 10175
CDS43802.1 LK392619_p1 hypothetical protein phrog_22499 unknown function unknown function 1 375 641
CDS43812.1 LK392619_p11 Connector phrog_2038 upper collar connector connector 1 6762 7775
CDS43817.1 LK392619_p16 Appendage phrog_17155 unknown function unknown function 1 10191 10967
CDS43823.1 LK392619_p22 Phage endolysin (lytic lysozyme phrog_6219 endolysin lysis 1 16613 17641
CDS43822.1 LK392619_p21 Holin phrog_199 holin lysis 1 16209 16613
CDS43810.1 LK392619_p9 hypothetical protein singleton unknown function unknown function 1 5381 5605
CDS43808.1 LK392619_p7 hypothetical protein phrog_22891 unknown function unknown function 1 4342 4851
CDS43811.1 LK392619_p10 Major head protein phrog_2006 major head protein head and packaging 1 5607 6707
CDS43826.1 LK392619_p25 hypothetical protein phrog_29520 unknown function unknown function -1 18338 18613
CDS43828.1 LK392619_p27 hypothetical protein singleton unknown function unknown function -1 18886 19104
CDS43804.1 LK392619_p3 hypothetical protein phrog_24156 unknown function unknown function 1 855 1145
CDS43820.1 LK392619_p19 Tail protein phrog_2248 tail protein tail 1 13261 15099
CDS43818.1 LK392619_p17 Appendage phrog_15030 unknown function unknown function 1 10967 11728
CDS43809.1 LK392619_p8 Scaffolding protein phrog_25389 unknown function unknown function 1 5072 5362
CDS43803.1 LK392619_p2 hypothetical protein singleton unknown function unknown function 1 656 841