| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
LK392619 |
Definition |
Streptococcus phage Cp-7, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Picovirinae; Cepunavirus; Streptococcus virus Cp7. |
DB of origin |
PVOG |
Length |
19741 |
Host Name |
Streptococcus pneumoniae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
28 |
%GC |
38.54 |
Number of singletons |
5 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| CDS43821.1 | LK392619_p20 | Encapsidation protein | phrog_2150 | terminase | head and packaging | 1 | 15173 | 16219 |
| CDS43815.1 | LK392619_p14 | hypothetical protein | phrog_23584 | unknown function | unknown function | 1 | 9002 | 9319 |
| CDS43806.1 | LK392619_p5 | DNA polymerase | phrog_1907 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 2240 | 3946 |
| CDS43819.1 | LK392619_p18 | Tail protein | phrog_30532 | tail protein | tail | 1 | 11695 | 13257 |
| CDS43807.1 | LK392619_p6 | hypothetical protein | phrog_26305 | unknown function | unknown function | 1 | 3903 | 4349 |
| CDS43824.1 | LK392619_p23 | hypothetical protein | singleton | unknown function | unknown function | -1 | 17718 | 18086 |
| CDS43829.1 | LK392619_p28 | hypothetical protein | phrog_16094 | unknown function | unknown function | -1 | 19119 | 19367 |
| CDS43827.1 | LK392619_p26 | hypothetical protein | phrog_27339 | unknown function | unknown function | -1 | 18615 | 18884 |
| CDS43805.1 | LK392619_p4 | Terminal protein | phrog_26145 | unknown function | unknown function | 1 | 1551 | 2243 |
| CDS43813.1 | LK392619_p12 | Neck protein | phrog_26520 | lower collar | tail | 1 | 7762 | 8409 |
| CDS43825.1 | LK392619_p24 | hypothetical protein | phrog_1027 | unknown function | unknown function | -1 | 18091 | 18333 |
| CDS43814.1 | LK392619_p13 | Appendage | phrog_27791 | unknown function | unknown function | 1 | 8421 | 9005 |
| CDS43816.1 | LK392619_p15 | Head fiber | singleton | unknown function | unknown function | 1 | 9306 | 10175 |
| CDS43802.1 | LK392619_p1 | hypothetical protein | phrog_22499 | unknown function | unknown function | 1 | 375 | 641 |
| CDS43812.1 | LK392619_p11 | Connector | phrog_2038 | upper collar connector | connector | 1 | 6762 | 7775 |
| CDS43817.1 | LK392619_p16 | Appendage | phrog_17155 | unknown function | unknown function | 1 | 10191 | 10967 |
| CDS43823.1 | LK392619_p22 | Phage endolysin (lytic lysozyme | phrog_6219 | endolysin | lysis | 1 | 16613 | 17641 |
| CDS43822.1 | LK392619_p21 | Holin | phrog_199 | holin | lysis | 1 | 16209 | 16613 |
| CDS43810.1 | LK392619_p9 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5381 | 5605 |
| CDS43808.1 | LK392619_p7 | hypothetical protein | phrog_22891 | unknown function | unknown function | 1 | 4342 | 4851 |
| CDS43811.1 | LK392619_p10 | Major head protein | phrog_2006 | major head protein | head and packaging | 1 | 5607 | 6707 |
| CDS43826.1 | LK392619_p25 | hypothetical protein | phrog_29520 | unknown function | unknown function | -1 | 18338 | 18613 |
| CDS43828.1 | LK392619_p27 | hypothetical protein | singleton | unknown function | unknown function | -1 | 18886 | 19104 |
| CDS43804.1 | LK392619_p3 | hypothetical protein | phrog_24156 | unknown function | unknown function | 1 | 855 | 1145 |
| CDS43820.1 | LK392619_p19 | Tail protein | phrog_2248 | tail protein | tail | 1 | 13261 | 15099 |
| CDS43818.1 | LK392619_p17 | Appendage | phrog_15030 | unknown function | unknown function | 1 | 10967 | 11728 |
| CDS43809.1 | LK392619_p8 | Scaffolding protein | phrog_25389 | unknown function | unknown function | 1 | 5072 | 5362 |
| CDS43803.1 | LK392619_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 656 | 841 |