| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
LK985321 |
Definition |
Clostridium phage phiCDHM14, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; unclassified Myoviridae. |
DB of origin |
PVOG |
Length |
32651 |
Host Name |
Clostridium |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
50 |
%GC |
29.53 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| CDU85314.1 | LK985321_p27 | regulatory protein | phrog_18831 | unknown function | unknown function | 1 | 19537 | 19986 |
| CDU85290.1 | LK985321_p3 | Clp protease protein | phrog_94 | head maturation protease | head and packaging | 1 | 2826 | 3563 |
| CDU85308.1 | LK985321_p21 | hypothetical protein | phrog_1589 | unknown function | unknown function | 1 | 15868 | 17148 |
| CDU85301.1 | LK985321_p14 | cell wall hydrolase/LysM protein | phrog_380 | endolysin | lysis | 1 | 10245 | 10883 |
| CDU85327.1 | LK985321_p40 | hypothetical protein | phrog_6407 | unknown function | unknown function | 1 | 27795 | 27977 |
| CDU85310.1 | LK985321_p23 | membrane protein | phrog_1193 | hemolysin | other | 1 | 17835 | 18065 |
| CDU85309.1 | LK985321_p22 | hypothetical protein | phrog_1243 | unknown function | unknown function | 1 | 17148 | 17330 |
| CDU85332.1 | LK985321_p45 | hypothetical protein | phrog_36 | transcriptional regulator | transcription regulation | 1 | 29541 | 30143 |
| CDU85333.1 | LK985321_p46 | hypothetical protein | phrog_36 | transcriptional regulator | transcription regulation | 1 | 30245 | 30712 |
| CDU85335.1 | LK985321_p48 | hypothetical protein | phrog_10762 | unknown function | unknown function | 1 | 31657 | 31872 |
| CDU85318.1 | LK985321_p31 | hypothetical protein | phrog_4021 | unknown function | unknown function | -1 | 21492 | 21773 |
| CDU85297.1 | LK985321_p10 | hypothetical protein | phrog_365 | tail protein | tail | 1 | 7395 | 7844 |
| CDU85305.1 | LK985321_p18 | hypothetical protein | phrog_6 | baseplate wedge subunit | tail | 1 | 13406 | 14458 |
| CDU85313.1 | LK985321_p26 | hypothetical protein | phrog_2655 | excisionase | integration and excision | -1 | 19178 | 19387 |
| CDU85298.1 | LK985321_p11 | conserved hypothetical protein (XkdN-like) | phrog_4976 | tail assembly chaperone | tail | 1 | 7891 | 8307 |
| CDU85316.1 | LK985321_p29 | hypothetical protein | phrog_27416 | unknown function | unknown function | 1 | 20710 | 21024 |
| CDU85336.1 | LK985321_p49 | endonuclease protein | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 31872 | 32165 |
| CDU85304.1 | LK985321_p17 | baseplate-J protein | phrog_120 | baseplate wedge subunit | tail | 1 | 12985 | 13413 |
| CDU85295.1 | LK985321_p8 | hypothetical protein | phrog_525 | unknown function | unknown function | 1 | 5881 | 6297 |
| CDU85307.1 | LK985321_p20 | hypothetical protein | phrog_2137 | tail fiber protein | tail | 1 | 15073 | 15852 |
| CDU85291.1 | LK985321_p4 | capsid protein | phrog_10 | major head protein | head and packaging | 1 | 3556 | 4824 |
| CDU85299.1 | LK985321_p12 | hypothetical protein | phrog_10264 | unknown function | unknown function | 1 | 8325 | 8498 |
| CDU85331.1 | LK985321_p44 | ssDNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 29079 | 29483 |
| CDU85334.1 | LK985321_p47 | integrase protein | phrog_216 | integrase | integration and excision | 1 | 30957 | 31460 |
| CDU85293.1 | LK985321_p6 | head tail joining protein | phrog_25 | head closure Hc1 | connector | 1 | 5125 | 5463 |
| CDU85294.1 | LK985321_p7 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 5456 | 5869 |
| CDU85292.1 | LK985321_p5 | head tail connector protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 4834 | 5121 |
| CDU85296.1 | LK985321_p9 | tail sheath protein | phrog_1480 | tail sheath | tail | 1 | 6314 | 7381 |
| CDU85328.1 | LK985321_p41 | hypothetical protein | phrog_4206 | unknown function | unknown function | 1 | 28043 | 28477 |
| CDU85302.1 | LK985321_p15 | cell wall hydrolase protein | phrog_400 | tail protein | tail | 1 | 11096 | 12643 |
| CDU85325.1 | LK985321_p38 | hypothetical protein | phrog_6335 | unknown function | unknown function | 1 | 26427 | 26771 |
| CDU85319.1 | LK985321_p32 | hypothetical protein | phrog_4741 | unknown function | unknown function | -1 | 21917 | 22249 |
| CDU85311.1 | LK985321_p24 | holin protein | phrog_1129 | holin | lysis | 1 | 18082 | 18339 |
| CDU85315.1 | LK985321_p28 | hypothetical protein | phrog_374 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 19998 | 20633 |
| CDU85329.1 | LK985321_p42 | hypothetical protein | phrog_2065 | unknown function | unknown function | 1 | 28575 | 28736 |
| CDU85303.1 | LK985321_p16 | conserved hypothetical protein (XkdS-like) | phrog_579 | unknown function | unknown function | 1 | 12659 | 12985 |
| CDU85317.1 | LK985321_p30 | hypothetical protein | phrog_30435 | unknown function | unknown function | 1 | 21008 | 21181 |
| CDU85323.1 | LK985321_p36 | endonuclease protein | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | -1 | 23621 | 24343 |
| CDU85324.1 | LK985321_p37 | type III restriction enzyme protein | phrog_5173 | unknown function | unknown function | 1 | 24789 | 26153 |
| CDU85337.1 | LK985321_p50 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32419 | 32610 |
| CDU85320.1 | LK985321_p33 | ParA protein | phrog_164 | ParA-like partition protein | DNA, RNA and nucleotide metabolism | -1 | 22250 | 23068 |
| CDU85321.1 | LK985321_p34 | hypothetical protein | phrog_32086 | unknown function | unknown function | -1 | 23190 | 23282 |
| CDU85306.1 | LK985321_p19 | tail fiber protein | phrog_521 | tail protein | tail | 1 | 14455 | 15072 |
| CDU85300.1 | LK985321_p13 | tail tape measure protein | phrog_991 | tail length tape measure protein | tail | 1 | 8491 | 10245 |
| CDU85330.1 | LK985321_p43 | hypothetical protein | phrog_12681 | unknown function | unknown function | 1 | 28741 | 29085 |
| CDU85288.1 | LK985321_p1 | terminase large subunit protein | phrog_9 | terminase large subunit | head and packaging | 1 | 1 | 1650 |
| CDU85326.1 | LK985321_p39 | regulatory protein | phrog_8 | transcriptional regulator | transcription regulation | -1 | 27245 | 27619 |
| CDU85312.1 | LK985321_p25 | endolysin protein | phrog_435 | endolysin | lysis | 1 | 18339 | 19151 |
| CDU85289.1 | LK985321_p2 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 1666 | 2820 |
| CDU85322.1 | LK985321_p35 | hypothetical protein | phrog_738 | unknown function | unknown function | -1 | 23397 | 23504 |