Genomic map of Clostridium phage phiCDHM14 (LK985321)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
LK985321
Definition
Clostridium phage phiCDHM14, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; unclassified Myoviridae.
DB of origin
PVOG
Length
32651
Host Name
Clostridium
Host domain
Bacteria
Is prophage?
undef
Number of proteins
50
%GC
29.53
Number of singletons
1
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
CDU85314.1 LK985321_p27 regulatory protein phrog_18831 unknown function unknown function 1 19537 19986
CDU85290.1 LK985321_p3 Clp protease protein phrog_94 head maturation protease head and packaging 1 2826 3563
CDU85308.1 LK985321_p21 hypothetical protein phrog_1589 unknown function unknown function 1 15868 17148
CDU85301.1 LK985321_p14 cell wall hydrolase/LysM protein phrog_380 endolysin lysis 1 10245 10883
CDU85327.1 LK985321_p40 hypothetical protein phrog_6407 unknown function unknown function 1 27795 27977
CDU85310.1 LK985321_p23 membrane protein phrog_1193 hemolysin other 1 17835 18065
CDU85309.1 LK985321_p22 hypothetical protein phrog_1243 unknown function unknown function 1 17148 17330
CDU85332.1 LK985321_p45 hypothetical protein phrog_36 transcriptional regulator transcription regulation 1 29541 30143
CDU85333.1 LK985321_p46 hypothetical protein phrog_36 transcriptional regulator transcription regulation 1 30245 30712
CDU85335.1 LK985321_p48 hypothetical protein phrog_10762 unknown function unknown function 1 31657 31872
CDU85318.1 LK985321_p31 hypothetical protein phrog_4021 unknown function unknown function -1 21492 21773
CDU85297.1 LK985321_p10 hypothetical protein phrog_365 tail protein tail 1 7395 7844
CDU85305.1 LK985321_p18 hypothetical protein phrog_6 baseplate wedge subunit tail 1 13406 14458
CDU85313.1 LK985321_p26 hypothetical protein phrog_2655 excisionase integration and excision -1 19178 19387
CDU85298.1 LK985321_p11 conserved hypothetical protein (XkdN-like) phrog_4976 tail assembly chaperone tail 1 7891 8307
CDU85316.1 LK985321_p29 hypothetical protein phrog_27416 unknown function unknown function 1 20710 21024
CDU85336.1 LK985321_p49 endonuclease protein phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 31872 32165
CDU85304.1 LK985321_p17 baseplate-J protein phrog_120 baseplate wedge subunit tail 1 12985 13413
CDU85295.1 LK985321_p8 hypothetical protein phrog_525 unknown function unknown function 1 5881 6297
CDU85307.1 LK985321_p20 hypothetical protein phrog_2137 tail fiber protein tail 1 15073 15852
CDU85291.1 LK985321_p4 capsid protein phrog_10 major head protein head and packaging 1 3556 4824
CDU85299.1 LK985321_p12 hypothetical protein phrog_10264 unknown function unknown function 1 8325 8498
CDU85331.1 LK985321_p44 ssDNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 29079 29483
CDU85334.1 LK985321_p47 integrase protein phrog_216 integrase integration and excision 1 30957 31460
CDU85293.1 LK985321_p6 head tail joining protein phrog_25 head closure Hc1 connector 1 5125 5463
CDU85294.1 LK985321_p7 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 5456 5869
CDU85292.1 LK985321_p5 head tail connector protein phrog_40 head-tail adaptor Ad1 connector 1 4834 5121
CDU85296.1 LK985321_p9 tail sheath protein phrog_1480 tail sheath tail 1 6314 7381
CDU85328.1 LK985321_p41 hypothetical protein phrog_4206 unknown function unknown function 1 28043 28477
CDU85302.1 LK985321_p15 cell wall hydrolase protein phrog_400 tail protein tail 1 11096 12643
CDU85325.1 LK985321_p38 hypothetical protein phrog_6335 unknown function unknown function 1 26427 26771
CDU85319.1 LK985321_p32 hypothetical protein phrog_4741 unknown function unknown function -1 21917 22249
CDU85311.1 LK985321_p24 holin protein phrog_1129 holin lysis 1 18082 18339
CDU85315.1 LK985321_p28 hypothetical protein phrog_374 HNH endonuclease DNA, RNA and nucleotide metabolism 1 19998 20633
CDU85329.1 LK985321_p42 hypothetical protein phrog_2065 unknown function unknown function 1 28575 28736
CDU85303.1 LK985321_p16 conserved hypothetical protein (XkdS-like) phrog_579 unknown function unknown function 1 12659 12985
CDU85317.1 LK985321_p30 hypothetical protein phrog_30435 unknown function unknown function 1 21008 21181
CDU85323.1 LK985321_p36 endonuclease protein phrog_192 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism -1 23621 24343
CDU85324.1 LK985321_p37 type III restriction enzyme protein phrog_5173 unknown function unknown function 1 24789 26153
CDU85337.1 LK985321_p50 hypothetical protein singleton unknown function unknown function 1 32419 32610
CDU85320.1 LK985321_p33 ParA protein phrog_164 ParA-like partition protein DNA, RNA and nucleotide metabolism -1 22250 23068
CDU85321.1 LK985321_p34 hypothetical protein phrog_32086 unknown function unknown function -1 23190 23282
CDU85306.1 LK985321_p19 tail fiber protein phrog_521 tail protein tail 1 14455 15072
CDU85300.1 LK985321_p13 tail tape measure protein phrog_991 tail length tape measure protein tail 1 8491 10245
CDU85330.1 LK985321_p43 hypothetical protein phrog_12681 unknown function unknown function 1 28741 29085
CDU85288.1 LK985321_p1 terminase large subunit protein phrog_9 terminase large subunit head and packaging 1 1 1650
CDU85326.1 LK985321_p39 regulatory protein phrog_8 transcriptional regulator transcription regulation -1 27245 27619
CDU85312.1 LK985321_p25 endolysin protein phrog_435 endolysin lysis 1 18339 19151
CDU85289.1 LK985321_p2 portal protein phrog_12 portal protein head and packaging 1 1666 2820
CDU85322.1 LK985321_p35 hypothetical protein phrog_738 unknown function unknown function -1 23397 23504