| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
LN610580 |
Definition |
Pseudomonas phage vB_PaeP_PAO1_1-15pyo, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Krylovirinae; Phikmvvirus; Pseudomonas virus 15pyo. |
DB of origin |
PVOG |
Length |
42750 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
49 |
%GC |
62.18 |
Number of singletons |
3 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| CEF89922.1 | LN610580_p43 | DNA maturase B | phrog_17672 | terminase large subunit | head and packaging | 1 | 39184 | 40050 |
| CEF89896.1 | LN610580_p17 | hypothetical protein | phrog_1614 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | 1 | 9727 | 10344 |
| CEF89882.1 | LN610580_p3 | hypothetical protein | phrog_7124 | unknown function | unknown function | 1 | 2021 | 2248 |
| CEF89884.1 | LN610580_p5 | hypothetical protein | phrog_6951 | unknown function | unknown function | 1 | 3166 | 3534 |
| CEF89899.1 | LN610580_p20 | hypothetical protein | phrog_5437 | unknown function | unknown function | 1 | 14049 | 14351 |
| CEF89904.1 | LN610580_p25 | hypothetical protein | phrog_801 | dATP / dGTP pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 17881 | 18252 |
| CEF89925.1 | LN610580_p46 | phage lysozyme | phrog_7 | endolysin | lysis | 1 | 41202 | 41672 |
| CEF89907.1 | LN610580_p28 | hypothetical protein | phrog_3986 | unknown function | unknown function | 1 | 21463 | 21936 |
| CEF89906.1 | LN610580_p27 | hypothetical protein | phrog_6575 | unknown function | unknown function | 1 | 21212 | 21463 |
| CEF89917.1 | LN610580_p38 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35927 | 36145 |
| CEF89887.1 | LN610580_p8 | hypothetical protein | phrog_4342 | unknown function | unknown function | 1 | 4085 | 4399 |
| CEF89883.1 | LN610580_p4 | hypothetical protein | phrog_1448 | unknown function | unknown function | 1 | 2259 | 2798 |
| CEF89912.1 | LN610580_p33 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 25799 | 26404 |
| CEF89900.1 | LN610580_p21 | hypothetical protein | phrog_862 | unknown function | unknown function | 1 | 14348 | 15457 |
| CEF89918.1 | LN610580_p39 | tail fiber protein | phrog_6953 | tail fiber protein | tail | 1 | 36225 | 36902 |
| CEF89916.1 | LN610580_p37 | internal core protein | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 32132 | 35899 |
| CEF89909.1 | LN610580_p30 | head-tail connector protein | phrog_449 | head-tail adaptor | connector | 1 | 22174 | 23721 |
| CEF89881.1 | LN610580_p2 | hypothetical protein | phrog_5722 | unknown function | unknown function | 1 | 1731 | 2021 |
| CEF89891.1 | LN610580_p12 | DNA-binding protein | phrog_6982 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 5809 | 6678 |
| CEF89898.1 | LN610580_p19 | exonuclease | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 11419 | 14043 |
| CEF89914.1 | LN610580_p35 | hypothetical protein | phrog_805 | internal virion protein | head and packaging | 1 | 28809 | 29432 |
| CEF89886.1 | LN610580_p7 | hypothetical protein | phrog_8496 | unknown function | unknown function | 1 | 3855 | 4106 |
| CEF89910.1 | LN610580_p31 | hypothetical protein | phrog_1018 | head scaffolding protein | head and packaging | 1 | 23725 | 24693 |
| CEF89894.1 | LN610580_p15 | hypothetical protein | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 7610 | 8500 |
| CEF89905.1 | LN610580_p26 | DNA-dependent RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 18604 | 21051 |
| CEF89895.1 | LN610580_p16 | hypothetical protein | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 8469 | 9737 |
| CEF89908.1 | LN610580_p29 | hypothetical protein | phrog_3112 | virion structural protein | head and packaging | 1 | 21881 | 22177 |
| CEF89897.1 | LN610580_p18 | ATP-dependent DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 10188 | 11291 |
| CEF89911.1 | LN610580_p32 | capsid protein | phrog_267 | major head protein | head and packaging | 1 | 24746 | 25753 |
| CEF89920.1 | LN610580_p41 | structural protein | phrog_4176 | tail fiber protein | tail | 1 | 37353 | 38261 |
| CEF89928.1 | LN610580_p49 | hypothetical protein | phrog_7171 | minor head protein | head and packaging | 1 | 42413 | 42607 |
| CEF89903.1 | LN610580_p24 | hypothetical protein | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 16618 | 17871 |
| CEF89915.1 | LN610580_p36 | internal virion protein | phrog_2083 | internal virion lysozyme motif | head and packaging | 1 | 29429 | 32128 |
| CEF89921.1 | LN610580_p42 | hypothetical protein | phrog_891 | terminase small subunit | head and packaging | 1 | 38816 | 39175 |
| CEF89892.1 | LN610580_p13 | hypothetical protein | phrog_2563 | unknown function | unknown function | 1 | 6948 | 7490 |
| CEF89880.1 | LN610580_p1 | hypothetical protein | phrog_21618 | unknown function | unknown function | 1 | 928 | 1122 |
| CEF89902.1 | LN610580_p23 | DNA endonuclease VII | phrog_423 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 16388 | 16828 |
| CEF89893.1 | LN610580_p14 | hypothetical protein | phrog_23126 | unknown function | unknown function | 1 | 7500 | 7703 |
| CEF89924.1 | LN610580_p45 | hypothetical protein | phrog_6597 | holin | lysis | 1 | 40993 | 41193 |
| CEF89923.1 | LN610580_p44 | DNA maturase B | phrog_15524 | terminase large subunit | head and packaging | 1 | 39923 | 40996 |
| CEF89890.1 | LN610580_p11 | hypothetical protein | phrog_6915 | unknown function | unknown function | 1 | 5474 | 5866 |
| CEF89913.1 | LN610580_p34 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 26401 | 28887 |
| CEF89885.1 | LN610580_p6 | hypothetical protein | phrog_7027 | unknown function | unknown function | 1 | 3377 | 3748 |
| CEF89926.1 | LN610580_p47 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41534 | 41959 |
| CEF89889.1 | LN610580_p10 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4428 | 4943 |
| CEF89919.1 | LN610580_p40 | hypothetical protein | phrog_8874 | tail fiber protein | tail | 1 | 36869 | 37360 |
| CEF89901.1 | LN610580_p22 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 15457 | 16398 |
| CEF89888.1 | LN610580_p9 | hypothetical protein | phrog_4955 | unknown function | unknown function | 1 | 4333 | 4632 |
| CEF89927.1 | LN610580_p48 | minor structural protein | phrog_6908 | minor head protein | head and packaging | 1 | 42049 | 42363 |