Genomic map of Clostridium phage phiCD24-1 (LN681534)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
LN681534
Definition
Clostridium phage phiCD24-1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
DB of origin
PVOG
Length
44129
Host Name
Clostridium difficile
Host domain
Bacteria
Is prophage?
undef
Number of proteins
63
%GC
28.5
Number of singletons
3
Number of paralogs
7

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
CEK40235.1 LN681534_p24 protein of unknown function phrog_17134 unknown function unknown function 1 21415 23634
CEK40272.1 LN681534_p61 hypothetical protein phrog_38429 unknown function unknown function 1 43608 43721
CEK40252.1 LN681534_p41 DNA-binding helix-turn-helix protein (fragment) phrog_8 transcriptional regulator transcription regulation -1 35864 36205
CEK40231.1 LN681534_p20 protein of unknown function phrog_1272 tail length tape measure protein tail 1 11917 17445
CEK40268.1 LN681534_p57 hypothetical protein phrog_3794 unknown function unknown function 1 42183 42311
CEK40217.1 LN681534_p6 protein of unknown function phrog_25063 unknown function unknown function 1 5235 5474
CEK40254.1 LN681534_p43 hypothetical protein phrog_130 anti-repressor Ant transcription regulation 1 36633 37442
CEK40228.1 LN681534_p17 hypothetical protein phrog_6541 unknown function unknown function 1 10384 10617
CEK40256.1 LN681534_p45 hypothetical protein phrog_2211 unknown function unknown function -1 37664 37975
CEK40245.1 LN681534_p34 hypothetical protein phrog_5134 unknown function unknown function -1 31986 32114
CEK40227.1 LN681534_p16 hypothetical protein phrog_6280 unknown function unknown function 1 9951 10427
CEK40232.1 LN681534_p21 hypothetical protein phrog_738 unknown function unknown function 1 17573 17722
CEK40274.1 LN681534_p63 hypothetical protein phrog_2655 excisionase integration and excision 1 43923 44129
CEK40246.1 LN681534_p35 hypothetical protein singleton unknown function unknown function -1 32172 32291
CEK40270.1 LN681534_p59 hypothetical protein phrog_190 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 42567 42983
CEK40212.1 LN681534_p1 Terminase small subunit phrog_51 terminase small subunit head and packaging 1 426 866
CEK40233.1 LN681534_p22 Tail component protein phrog_33 distal tail protein Dit tail 1 17883 18638
CEK40244.1 LN681534_p33 membrane protein phrog_11497 membrane protein moron, auxiliary metabolic gene and host takeover -1 31742 31909
CEK40239.1 LN681534_p28 protein of unknown function phrog_8852 unknown function unknown function 1 29877 30206
CEK40271.1 LN681534_p60 hypothetical protein phrog_36 transcriptional regulator transcription regulation 1 43002 43502
CEK40242.1 LN681534_p31 N-acetylmuramoyl-L-alanine amidase phrog_435 endolysin lysis 1 30711 31520
CEK40224.1 LN681534_p13 protein of unknown function phrog_5 tail completion or Neck1 protein connector 1 8294 8728
CEK40234.1 LN681534_p23 Tail protein/endopeptidase (modular protein) phrog_13289 tail protein tail 1 18640 21408
CEK40220.1 LN681534_p9 hypothetical protein phrog_194 head scaffolding protein head and packaging 1 6032 6667
CEK40266.1 LN681534_p55 hypothetical protein phrog_2961 unknown function unknown function 1 41930 42064
CEK40236.1 LN681534_p25 Tail fiber protein phrog_7809 tail fiber protein tail 1 23634 25754
CEK40249.1 LN681534_p38 Prophage lambdaba04, site-specific recombinase,phage integrase family phrog_1 integrase integration and excision -1 33350 34480
CEK40237.1 LN681534_p26 protein of unknown function phrog_6782 tail fiber protein tail 1 25782 27983
CEK40265.1 LN681534_p54 hypothetical protein phrog_1310 unknown function unknown function 1 41568 41930
CEK40247.1 LN681534_p36 hypothetical protein phrog_2329 unknown function unknown function -1 32307 32483
CEK40264.1 LN681534_p53 Single-stranded DNA-binding protein 3 phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 41119 41538
CEK40222.1 LN681534_p11 hypothetical protein phrog_4020 unknown function unknown function 1 7679 7933
CEK40261.1 LN681534_p50 protein of unknown function phrog_4500 unknown function unknown function 1 39287 39568
CEK40248.1 LN681534_p37 hypothetical protein phrog_11497 membrane protein moron, auxiliary metabolic gene and host takeover -1 32485 32652
CEK40260.1 LN681534_p49 hypothetical protein phrog_2219 unknown function unknown function 1 38966 39208
CEK40259.1 LN681534_p48 hypothetical protein phrog_2047 unknown function unknown function 1 38659 38802
CEK40223.1 LN681534_p12 hypothetical protein phrog_8435 unknown function unknown function 1 7930 8292
CEK40251.1 LN681534_p40 DNA-binding helix-turn-helix protein phrog_8 transcriptional regulator transcription regulation -1 35304 35852
CEK40230.1 LN681534_p19 exported protein of unknown function phrog_36802 unknown function unknown function 1 11284 11805
CEK40273.1 LN681534_p62 hypothetical protein singleton unknown function unknown function 1 43792 43902
CEK40216.1 LN681534_p5 protein of unknown function phrog_8857 unknown function unknown function 1 5027 5203
CEK40250.1 LN681534_p39 phage-related protein phrog_87 metallo-protease other -1 34722 35228
CEK40258.1 LN681534_p47 DNA binding domain, excisionase family phrog_1877 DNA binding protein DNA, RNA and nucleotide metabolism 1 38280 38672
CEK40255.1 LN681534_p44 protein of unknown function singleton unknown function unknown function 1 37493 37675
CEK40263.1 LN681534_p52 phage replication protein phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 40194 41099
CEK40238.1 LN681534_p27 protein of unknown function phrog_6782 tail fiber protein tail 1 27999 29861
CEK40269.1 LN681534_p58 protein of unknown function phrog_4531 unknown function unknown function 1 42343 42540
CEK40221.1 LN681534_p10 Phage coat protein phrog_247 major head protein head and packaging 1 6685 7653
CEK40225.1 LN681534_p14 hypothetical protein phrog_7585 unknown function unknown function 1 8736 9080
CEK40219.1 LN681534_p8 protein of unknown function phrog_8857 unknown function unknown function 1 5720 5896
CEK40226.1 LN681534_p15 protein of unknown function phrog_6686 tail tube protein tail 1 9086 9892
CEK40243.1 LN681534_p32 hypothetical protein phrog_2329 unknown function unknown function -1 31565 31741
CEK40229.1 LN681534_p18 hypothetical protein phrog_4394 unknown function unknown function 1 10819 10980
CEK40267.1 LN681534_p56 hypothetical protein phrog_6827 unknown function unknown function 1 42048 42167
CEK40213.1 LN681534_p2 Large terminase protein phrog_2 terminase large subunit head and packaging 1 859 2121
CEK40240.1 LN681534_p29 hypothetical protein phrog_2310 unknown function unknown function 1 30232 30384
CEK40262.1 LN681534_p51 phage essential recombination function protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 39555 40193
CEK40215.1 LN681534_p4 protein of unknown function phrog_595 head maturation protease head and packaging 1 3616 5034
CEK40257.1 LN681534_p46 DNA-binding helix-turn-helix protein (modular protein) phrog_3 transcriptional repressor transcription regulation 1 38052 38249
CEK40241.1 LN681534_p30 holin phrog_4884 holin lysis 1 30448 30714
CEK40253.1 LN681534_p42 Transcriptional regulator PBSX family (modular protein) phrog_3 transcriptional repressor transcription regulation 1 36382 36585
CEK40218.1 LN681534_p7 protein of unknown function phrog_8857 unknown function unknown function 1 5475 5690
CEK40214.1 LN681534_p3 protein of unknown function phrog_64 portal protein head and packaging 1 2132 3616