| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF001366 |
Definition |
Salmonella phage ST1, partial genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Guernseyvirinae; Jerseyvirus; unclassified Jerseyvirus. |
DB of origin |
NUCCORE |
Length |
42285 |
Host Name |
Salmonella enterica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
61 |
%GC |
49.92 |
Number of singletons |
4 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ASZ78256.1 | MF001366_p60 | hypothetical protein | phrog_9384 | unknown function | unknown function | -1 | 41186 | 41350 |
| ASZ78203.1 | MF001366_p7 | hypothetical protein | phrog_13603 | unknown function | unknown function | 1 | 4939 | 5115 |
| ASZ78234.1 | MF001366_p38 | hypothetical protein | phrog_206 | head scaffolding protein | head and packaging | -1 | 29952 | 30653 |
| ASZ78208.1 | MF001366_p12 | DNA helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 9573 | 12038 |
| ASZ78239.1 | MF001366_p43 | hypothetical protein | phrog_6095 | amidase | lysis | 1 | 33221 | 33871 |
| ASZ78255.1 | MF001366_p59 | hypothetical protein | phrog_6094 | unknown function | unknown function | -1 | 40734 | 41120 |
| ASZ78226.1 | MF001366_p30 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | -1 | 26095 | 26490 |
| ASZ78245.1 | MF001366_p49 | hypothetical protein | phrog_268 | unknown function | unknown function | -1 | 37859 | 38083 |
| ASZ78201.1 | MF001366_p5 | 13.88 kDa late protein | phrog_3127 | unknown function | unknown function | 1 | 2945 | 3472 |
| ASZ78204.1 | MF001366_p8 | hypothetical protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 5197 | 5823 |
| ASZ78223.1 | MF001366_p27 | hypothetical protein | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 23807 | 24478 |
| ASZ78216.1 | MF001366_p20 | hypothetical protein | phrog_384 | virion structural protein | head and packaging | -1 | 18314 | 18814 |
| ASZ78252.1 | MF001366_p56 | hypothetical protein | phrog_2359 | holin | lysis | -1 | 39805 | 40086 |
| ASZ78200.1 | MF001366_p4 | repressor | phrog_3 | transcriptional repressor | transcription regulation | -1 | 2593 | 2811 |
| ASZ78250.1 | MF001366_p54 | lysin | phrog_7 | endolysin | lysis | -1 | 39047 | 39535 |
| ASZ78225.1 | MF001366_p29 | hypothetical protein | phrog_179 | tail terminator | connector | -1 | 25676 | 26095 |
| ASZ78197.1 | MF001366_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1 | 105 |
| ASZ78207.1 | MF001366_p11 | hypothetical protein | phrog_4879 | unknown function | unknown function | 1 | 9385 | 9576 |
| ASZ78218.1 | MF001366_p22 | hypothetical protein | phrog_4557 | unknown function | unknown function | -1 | 21142 | 21501 |
| ASZ78224.1 | MF001366_p28 | site-specific recombinase | phrog_290 | minor tail protein | tail | -1 | 24507 | 25676 |
| ASZ78213.1 | MF001366_p17 | tail fiber protein | phrog_469 | tail protein | tail | -1 | 14873 | 17449 |
| ASZ78246.1 | MF001366_p50 | Nin protein | phrog_1402 | unknown function | unknown function | -1 | 38226 | 38408 |
| ASZ78211.1 | MF001366_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12684 | 12776 |
| ASZ78235.1 | MF001366_p39 | hypothetical protein | phrog_2536 | Rz-like spanin | lysis | -1 | 30844 | 31233 |
| ASZ78249.1 | MF001366_p53 | hypothetical protein | phrog_2180 | unknown function | unknown function | -1 | 38712 | 38861 |
| ASZ78253.1 | MF001366_p57 | hypothetical protein | phrog_4947 | unknown function | unknown function | -1 | 40166 | 40531 |
| ASZ78209.1 | MF001366_p13 | HNH homing endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 12035 | 12526 |
| ASZ78227.1 | MF001366_p31 | hypothetical protein | phrog_161 | head closure Hc1 | connector | -1 | 26487 | 26846 |
| ASZ78248.1 | MF001366_p52 | hypothetical protein | phrog_3002 | unknown function | unknown function | -1 | 38557 | 38715 |
| ASZ78241.1 | MF001366_p45 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | -1 | 35390 | 36556 |
| ASZ78244.1 | MF001366_p48 | hypothetical protein | singleton | unknown function | unknown function | -1 | 37595 | 37714 |
| ASZ78221.1 | MF001366_p25 | transcriptional regulator | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | 1 | 22336 | 23466 |
| ASZ78222.1 | MF001366_p26 | hypothetical protein | phrog_2452 | unknown function | unknown function | 1 | 23463 | 23693 |
| ASZ78243.1 | MF001366_p47 | hypothetical protein | phrog_18319 | unknown function | unknown function | -1 | 37186 | 37317 |
| ASZ78219.1 | MF001366_p23 | hypothetical protein | phrog_313 | Tail assembly chaperone | tail | -1 | 21507 | 21923 |
| ASZ78254.1 | MF001366_p58 | hypothetical protein | phrog_3766 | unknown function | unknown function | -1 | 40534 | 40737 |
| ASZ78238.1 | MF001366_p42 | hypothetical protein | phrog_241 | head morphogenesis | head and packaging | -1 | 32012 | 33055 |
| ASZ78205.1 | MF001366_p9 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 5881 | 8979 |
| ASZ78229.1 | MF001366_p33 | hypothetical protein | phrog_477 | head-tail adaptor Ad1 | connector | -1 | 27454 | 27963 |
| ASZ78198.1 | MF001366_p2 | hypothetical protein | phrog_5169 | unknown function | unknown function | 1 | 102 | 335 |
| ASZ78215.1 | MF001366_p19 | transcriptional regulator | phrog_396 | minor tail protein | tail | -1 | 17802 | 18317 |
| ASZ78202.1 | MF001366_p6 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 3515 | 4942 |
| ASZ78257.1 | MF001366_p61 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42220 | 42285 |
| ASZ78212.1 | MF001366_p16 | tail fiber protein | phrog_1819 | tail spike protein | tail | -1 | 12806 | 14860 |
| ASZ78240.1 | MF001366_p44 | structural protein | phrog_145 | portal protein | head and packaging | -1 | 33902 | 35377 |
| ASZ78242.1 | MF001366_p46 | hypothetical protein | phrog_3064 | terminase | head and packaging | -1 | 36651 | 37157 |
| ASZ78210.1 | MF001366_p14 | hypothetical protein | phrog_5915 | unknown function | unknown function | 1 | 12526 | 12687 |
| ASZ78199.1 | MF001366_p3 | hypothetical protein | phrog_3228 | replicative helicase-primase | DNA, RNA and nucleotide metabolism | 1 | 392 | 2578 |
| ASZ78232.1 | MF001366_p36 | capsid and scaffold protein | phrog_4366 | head fiber protein | head and packaging | -1 | 28554 | 28838 |
| ASZ78217.1 | MF001366_p21 | hypothetical protein | phrog_1538 | tail length tape measure protein | tail | -1 | 18816 | 21149 |
| ASZ78231.1 | MF001366_p35 | fibritin protein | phrog_4069 | Hoc-like head decoration | head and packaging | -1 | 28192 | 28542 |
| ASZ78233.1 | MF001366_p37 | major capsid protein | phrog_247 | major head protein | head and packaging | -1 | 28899 | 29948 |
| ASZ78237.1 | MF001366_p41 | fibritin protein | phrog_3945 | Hoc-like head decoration | head and packaging | -1 | 31551 | 32009 |
| ASZ78220.1 | MF001366_p24 | immunity protein | phrog_1039 | immunity to superinfection | moron, auxiliary metabolic gene and host takeover | 1 | 22094 | 22273 |
| ASZ78251.1 | MF001366_p55 | hypothetical protein | phrog_2508 | holin | lysis | -1 | 39513 | 39803 |
| ASZ78230.1 | MF001366_p34 | hypothetical protein | phrog_4451 | unknown function | unknown function | -1 | 27967 | 28155 |
| ASZ78206.1 | MF001366_p10 | hypothetical protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 9066 | 9353 |
| ASZ78228.1 | MF001366_p32 | hypothetical protein | phrog_3614 | unknown function | unknown function | -1 | 26846 | 27451 |
| ASZ78236.1 | MF001366_p40 | hypothetical protein | phrog_14923 | unknown function | unknown function | -1 | 31278 | 31397 |
| ASZ78247.1 | MF001366_p51 | hypothetical protein | phrog_4684 | unknown function | unknown function | -1 | 38405 | 38560 |
| ASZ78214.1 | MF001366_p18 | hypothetical protein | phrog_329 | minor tail protein | tail | -1 | 17440 | 17805 |