Genomic map of Salmonella phage ST1 (MF001366)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MF001366
Definition
Salmonella phage ST1, partial genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Guernseyvirinae; Jerseyvirus; unclassified Jerseyvirus.
DB of origin
NUCCORE
Length
42285
Host Name
Salmonella enterica
Host domain
Bacteria
Is prophage?
undef
Number of proteins
61
%GC
49.92
Number of singletons
4
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ASZ78256.1 MF001366_p60 hypothetical protein phrog_9384 unknown function unknown function -1 41186 41350
ASZ78203.1 MF001366_p7 hypothetical protein phrog_13603 unknown function unknown function 1 4939 5115
ASZ78234.1 MF001366_p38 hypothetical protein phrog_206 head scaffolding protein head and packaging -1 29952 30653
ASZ78208.1 MF001366_p12 DNA helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism 1 9573 12038
ASZ78239.1 MF001366_p43 hypothetical protein phrog_6095 amidase lysis 1 33221 33871
ASZ78255.1 MF001366_p59 hypothetical protein phrog_6094 unknown function unknown function -1 40734 41120
ASZ78226.1 MF001366_p30 hypothetical protein phrog_169 tail completion or Neck1 protein connector -1 26095 26490
ASZ78245.1 MF001366_p49 hypothetical protein phrog_268 unknown function unknown function -1 37859 38083
ASZ78201.1 MF001366_p5 13.88 kDa late protein phrog_3127 unknown function unknown function 1 2945 3472
ASZ78204.1 MF001366_p8 hypothetical protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 5197 5823
ASZ78223.1 MF001366_p27 hypothetical protein phrog_63 anti-repressor Ant transcription regulation 1 23807 24478
ASZ78216.1 MF001366_p20 hypothetical protein phrog_384 virion structural protein head and packaging -1 18314 18814
ASZ78252.1 MF001366_p56 hypothetical protein phrog_2359 holin lysis -1 39805 40086
ASZ78200.1 MF001366_p4 repressor phrog_3 transcriptional repressor transcription regulation -1 2593 2811
ASZ78250.1 MF001366_p54 lysin phrog_7 endolysin lysis -1 39047 39535
ASZ78225.1 MF001366_p29 hypothetical protein phrog_179 tail terminator connector -1 25676 26095
ASZ78197.1 MF001366_p1 hypothetical protein singleton unknown function unknown function 1 1 105
ASZ78207.1 MF001366_p11 hypothetical protein phrog_4879 unknown function unknown function 1 9385 9576
ASZ78218.1 MF001366_p22 hypothetical protein phrog_4557 unknown function unknown function -1 21142 21501
ASZ78224.1 MF001366_p28 site-specific recombinase phrog_290 minor tail protein tail -1 24507 25676
ASZ78213.1 MF001366_p17 tail fiber protein phrog_469 tail protein tail -1 14873 17449
ASZ78246.1 MF001366_p50 Nin protein phrog_1402 unknown function unknown function -1 38226 38408
ASZ78211.1 MF001366_p15 hypothetical protein singleton unknown function unknown function 1 12684 12776
ASZ78235.1 MF001366_p39 hypothetical protein phrog_2536 Rz-like spanin lysis -1 30844 31233
ASZ78249.1 MF001366_p53 hypothetical protein phrog_2180 unknown function unknown function -1 38712 38861
ASZ78253.1 MF001366_p57 hypothetical protein phrog_4947 unknown function unknown function -1 40166 40531
ASZ78209.1 MF001366_p13 HNH homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 12035 12526
ASZ78227.1 MF001366_p31 hypothetical protein phrog_161 head closure Hc1 connector -1 26487 26846
ASZ78248.1 MF001366_p52 hypothetical protein phrog_3002 unknown function unknown function -1 38557 38715
ASZ78241.1 MF001366_p45 terminase large subunit phrog_2 terminase large subunit head and packaging -1 35390 36556
ASZ78244.1 MF001366_p48 hypothetical protein singleton unknown function unknown function -1 37595 37714
ASZ78221.1 MF001366_p25 transcriptional regulator phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism 1 22336 23466
ASZ78222.1 MF001366_p26 hypothetical protein phrog_2452 unknown function unknown function 1 23463 23693
ASZ78243.1 MF001366_p47 hypothetical protein phrog_18319 unknown function unknown function -1 37186 37317
ASZ78219.1 MF001366_p23 hypothetical protein phrog_313 Tail assembly chaperone tail -1 21507 21923
ASZ78254.1 MF001366_p58 hypothetical protein phrog_3766 unknown function unknown function -1 40534 40737
ASZ78238.1 MF001366_p42 hypothetical protein phrog_241 head morphogenesis head and packaging -1 32012 33055
ASZ78205.1 MF001366_p9 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 5881 8979
ASZ78229.1 MF001366_p33 hypothetical protein phrog_477 head-tail adaptor Ad1 connector -1 27454 27963
ASZ78198.1 MF001366_p2 hypothetical protein phrog_5169 unknown function unknown function 1 102 335
ASZ78215.1 MF001366_p19 transcriptional regulator phrog_396 minor tail protein tail -1 17802 18317
ASZ78202.1 MF001366_p6 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism 1 3515 4942
ASZ78257.1 MF001366_p61 hypothetical protein singleton unknown function unknown function 1 42220 42285
ASZ78212.1 MF001366_p16 tail fiber protein phrog_1819 tail spike protein tail -1 12806 14860
ASZ78240.1 MF001366_p44 structural protein phrog_145 portal protein head and packaging -1 33902 35377
ASZ78242.1 MF001366_p46 hypothetical protein phrog_3064 terminase head and packaging -1 36651 37157
ASZ78210.1 MF001366_p14 hypothetical protein phrog_5915 unknown function unknown function 1 12526 12687
ASZ78199.1 MF001366_p3 hypothetical protein phrog_3228 replicative helicase-primase DNA, RNA and nucleotide metabolism 1 392 2578
ASZ78232.1 MF001366_p36 capsid and scaffold protein phrog_4366 head fiber protein head and packaging -1 28554 28838
ASZ78217.1 MF001366_p21 hypothetical protein phrog_1538 tail length tape measure protein tail -1 18816 21149
ASZ78231.1 MF001366_p35 fibritin protein phrog_4069 Hoc-like head decoration head and packaging -1 28192 28542
ASZ78233.1 MF001366_p37 major capsid protein phrog_247 major head protein head and packaging -1 28899 29948
ASZ78237.1 MF001366_p41 fibritin protein phrog_3945 Hoc-like head decoration head and packaging -1 31551 32009
ASZ78220.1 MF001366_p24 immunity protein phrog_1039 immunity to superinfection moron, auxiliary metabolic gene and host takeover 1 22094 22273
ASZ78251.1 MF001366_p55 hypothetical protein phrog_2508 holin lysis -1 39513 39803
ASZ78230.1 MF001366_p34 hypothetical protein phrog_4451 unknown function unknown function -1 27967 28155
ASZ78206.1 MF001366_p10 hypothetical protein phrog_93 endonuclease DNA, RNA and nucleotide metabolism 1 9066 9353
ASZ78228.1 MF001366_p32 hypothetical protein phrog_3614 unknown function unknown function -1 26846 27451
ASZ78236.1 MF001366_p40 hypothetical protein phrog_14923 unknown function unknown function -1 31278 31397
ASZ78247.1 MF001366_p51 hypothetical protein phrog_4684 unknown function unknown function -1 38405 38560
ASZ78214.1 MF001366_p18 hypothetical protein phrog_329 minor tail protein tail -1 17440 17805