Genomic map of Pseudomonas phage Skulduggery (MF042361)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MF042361
Definition
Pseudomonas phage Skulduggery, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae.
DB of origin
NUCCORE
Length
62978
Host Name
Pseudomonas fluorescens
Host domain
Bacteria
Is prophage?
undef
Number of proteins
72
%GC
60.7
Number of singletons
36
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ARV77166.1 MF042361_p67 hypothetical protein singleton unknown function unknown function 1 59922 60350
ARV77118.1 MF042361_p19 hypothetical protein singleton unknown function unknown function 1 16043 17797
ARV77123.1 MF042361_p24 acyl-CoA N-acyltransferase phrog_4470 acyl-CoA N-acyltransferase moron, auxiliary metabolic gene and host takeover 1 25352 25786
ARV77165.1 MF042361_p66 hypothetical protein singleton unknown function unknown function 1 59734 59925
ARV77110.1 MF042361_p11 hypothetical protein phrog_8246 unknown function unknown function 1 8139 9095
ARV77136.1 MF042361_p37 hypothetical protein singleton unknown function unknown function -1 43251 43463
ARV77160.1 MF042361_p61 hypothetical protein singleton unknown function unknown function 1 57199 57801
ARV77129.1 MF042361_p30 lysis protein B phrog_2658 hol-like chemotaxis other 1 41120 41473
ARV77170.1 MF042361_p71 hypothetical protein singleton unknown function unknown function 1 61587 61979
ARV77103.1 MF042361_p4 hypothetical protein singleton unknown function unknown function 1 2980 3450
ARV77128.1 MF042361_p29 lysozyme phrog_90 endolysin lysis 1 40621 41127
ARV77122.1 MF042361_p23 hypothetical protein singleton unknown function unknown function 1 24394 25305
ARV77135.1 MF042361_p36 hypothetical protein phrog_17384 unknown function unknown function -1 42943 43251
ARV77114.1 MF042361_p15 hypothetical protein phrog_13934 unknown function unknown function 1 11028 11975
ARV77116.1 MF042361_p17 hypothetical protein phrog_437 virion structural protein head and packaging 1 12696 13295
ARV77140.1 MF042361_p41 transcriptional regulator phrog_17513 transcriptional regulator transcription regulation 1 46536 46880
ARV77146.1 MF042361_p47 hypothetical protein phrog_4973 unknown function unknown function 1 50321 50566
ARV77131.1 MF042361_p32 hypothetical protein phrog_1152 Rz-like spanin lysis 1 41606 41965
ARV77105.1 MF042361_p6 hypothetical protein singleton unknown function unknown function 1 3767 4513
ARV77132.1 MF042361_p33 hypothetical protein singleton unknown function unknown function 1 41952 42095
ARV77156.1 MF042361_p57 hypothetical protein phrog_4158 unknown function unknown function -1 54620 55279
ARV77145.1 MF042361_p46 hypothetical protein phrog_61 2OG-Fe(II) oxygenase moron, auxiliary metabolic gene and host takeover 1 49495 50223
ARV77161.1 MF042361_p62 hypothetical protein singleton unknown function unknown function 1 57803 58219
ARV77101.1 MF042361_p2 hypothetical protein singleton unknown function unknown function -1 956 1225
ARV77154.1 MF042361_p55 hypothetical protein singleton unknown function unknown function -1 54015 54233
ARV77158.1 MF042361_p59 hypothetical protein singleton unknown function unknown function 1 56201 56578
ARV77127.1 MF042361_p28 hypothetical protein phrog_10691 unknown function unknown function 1 29310 40397
ARV77126.1 MF042361_p27 hypothetical protein phrog_9667 virion structural protein head and packaging 1 27997 29301
ARV77164.1 MF042361_p65 hypothetical protein singleton unknown function unknown function 1 59246 59737
ARV77119.1 MF042361_p20 hypothetical protein singleton unknown function unknown function 1 17870 21382
ARV77137.1 MF042361_p38 hypothetical protein singleton unknown function unknown function -1 43444 43677
ARV77115.1 MF042361_p16 hypothetical protein phrog_399 structural protein head and packaging 1 11981 12703
ARV77139.1 MF042361_p40 hypothetical protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 45495 46316
ARV77134.1 MF042361_p35 hypothetical protein singleton unknown function unknown function -1 42582 42932
ARV77107.1 MF042361_p8 hypothetical protein phrog_872 unknown function unknown function 1 4858 5352
ARV77104.1 MF042361_p5 hypothetical protein singleton unknown function unknown function 1 3456 3701
ARV77162.1 MF042361_p63 hypothetical protein singleton unknown function unknown function 1 58216 58887
ARV77112.1 MF042361_p13 major capsid protein phrog_334 major head protein head and packaging 1 9394 10494
ARV77157.1 MF042361_p58 hypothetical protein singleton unknown function unknown function 1 55471 56154
ARV77150.1 MF042361_p51 hypothetical protein phrog_16764 unknown function unknown function -1 52622 52846
ARV77155.1 MF042361_p56 hypothetical protein singleton unknown function unknown function -1 54230 54604
ARV77111.1 MF042361_p12 hypothetical protein phrog_8397 CsrA-like regulator transcription regulation 1 9108 9293
ARV77113.1 MF042361_p14 hypothetical protein phrog_8455 virion structural protein head and packaging 1 10508 10957
ARV77117.1 MF042361_p18 hypothetical protein phrog_18474 hydrolase other 1 13261 16041
ARV77138.1 MF042361_p39 endonuclease phrog_7655 RecE-like recombination exonuclease DNA, RNA and nucleotide metabolism -1 43674 45488
ARV77121.1 MF042361_p22 hypothetical protein phrog_511 internal virion protein head and packaging 1 22817 24391
ARV77152.1 MF042361_p53 hypothetical protein singleton unknown function unknown function -1 53363 53821
ARV77149.1 MF042361_p50 DNA replication protein phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 51545 52498
ARV77109.1 MF042361_p10 hypothetical protein phrog_156 portal protein head and packaging 1 5761 8127
ARV77148.1 MF042361_p49 hypothetical protein phrog_270 replication initiation protein DNA, RNA and nucleotide metabolism 1 50784 51548
ARV77171.1 MF042361_p72 hypothetical protein singleton unknown function unknown function 1 61973 62839
ARV77106.1 MF042361_p7 hypothetical protein singleton unknown function unknown function 1 4559 4861
ARV77133.1 MF042361_p34 hypothetical protein singleton unknown function unknown function -1 42089 42538
ARV77124.1 MF042361_p25 hypothetical protein phrog_8003 virion structural protein head and packaging 1 25776 26939
ARV77153.1 MF042361_p54 hypothetical protein singleton unknown function unknown function -1 53833 54018
ARV77169.1 MF042361_p70 hypothetical protein singleton unknown function unknown function 1 61370 61585
ARV77147.1 MF042361_p48 hypothetical protein singleton unknown function unknown function 1 50563 50787
ARV77163.1 MF042361_p64 hypothetical protein phrog_1872 endonuclease DNA, RNA and nucleotide metabolism 1 58896 59249
ARV77159.1 MF042361_p60 hypothetical protein singleton unknown function unknown function 1 56647 57171
ARV77102.1 MF042361_p3 large terminase protein phrog_2 terminase large subunit head and packaging 1 1415 2983
ARV77168.1 MF042361_p69 hypothetical protein singleton unknown function unknown function 1 60958 61377
ARV77120.1 MF042361_p21 hypothetical protein singleton unknown function unknown function 1 21385 22809
ARV77151.1 MF042361_p52 hypothetical protein singleton unknown function unknown function -1 52836 53267
ARV77130.1 MF042361_p31 hypothetical protein singleton unknown function unknown function 1 41466 41609
ARV77125.1 MF042361_p26 hypothetical protein singleton unknown function unknown function 1 26929 27984
ARV77167.1 MF042361_p68 hypothetical protein singleton unknown function unknown function 1 60347 60961
ARV77141.1 MF042361_p42 hypothetical protein phrog_9129 unknown function unknown function 1 46877 47428
ARV77100.1 MF042361_p1 small terminase subunit phrog_51 terminase small subunit head and packaging 1 138 935
ARV77142.1 MF042361_p43 exonuclease phrog_724 exonuclease recombination-associated DNA, RNA and nucleotide metabolism 1 47457 48659
ARV77144.1 MF042361_p45 hypothetical protein phrog_131 HNH endonuclease DNA, RNA and nucleotide metabolism 1 49183 49485
ARV77108.1 MF042361_p9 hypothetical protein phrog_10057 DNA methyltransferase other 1 5349 5768
ARV77143.1 MF042361_p44 hypothetical protein phrog_319 NinB/ Orf homologous recombination mediator DNA, RNA and nucleotide metabolism 1 48713 49186