| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF074189 |
Definition |
Sinorhizobium phage phiM5, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae. |
DB of origin |
NUCCORE |
Length |
44005 |
Host Name |
Sinorhizobium meliloti |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
59 |
%GC |
60.97 |
Number of singletons |
29 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ARV77526.1 | MF074189_p20 | structural protein | phrog_3287 | virion structural protein | head and packaging | 1 | 14146 | 15654 |
| ARV77536.1 | MF074189_p31 | 5' nucleotidase | phrog_2252 | endolysin; inhibits RNA polymerase | lysis | -1 | 25986 | 27038 |
| ARV77523.1 | MF074189_p17 | endolysin | phrog_315 | endolysin | lysis | 1 | 12645 | 13394 |
| ARV77544.1 | MF074189_p39 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 32590 | 33876 |
| ARV77508.1 | MF074189_p3 | peptidase | phrog_1040 | peptidase HslV family | other | 1 | 2090 | 2611 |
| ARV77513.1 | MF074189_p8 | major capsid protein | phrog_1328 | major head protein | head and packaging | 1 | 6332 | 7303 |
| ARV77537.1 | MF074189_p32 | DNA polymerase A | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 27069 | 29135 |
| ARV77561.1 | MF074189_p56 | hypothetical protein | phrog_1909 | unknown function | unknown function | -1 | 40934 | 41827 |
| ARV77539.1 | MF074189_p34 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29865 | 30488 |
| ARV77506.1 | MF074189_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 23 | 301 |
| ARV77548.1 | MF074189_p43 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34832 | 35074 |
| ARV77538.1 | MF074189_p33 | hypothetical protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 29249 | 29863 |
| ARV77522.1 | MF074189_p16 | hypothetical protein | phrog_6034 | unknown function | unknown function | 1 | 12117 | 12635 |
| ARV77555.1 | MF074189_p50 | hypothetical protein | singleton | unknown function | unknown function | -1 | 37656 | 38156 |
| ARV77553.1 | MF074189_p48 | hypothetical protein | singleton | unknown function | unknown function | -1 | 36694 | 37434 |
| ARV77535.1 | MF074189_p30 | hypothetical protein | singleton | unknown function | unknown function | -1 | 25749 | 25970 |
| ARV77519.1 | MF074189_p26 | hypothetical protein | singleton | unknown function | unknown function | -1 | 21854 | 22024 |
| ARV77554.1 | MF074189_p49 | hypothetical protein | singleton | unknown function | unknown function | -1 | 37490 | 37654 |
| ARV77534.1 | MF074189_p29 | Bifunctional DNA primase/polymerase | phrog_1156 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 23196 | 25640 |
| ARV77530.1 | MF074189_p24 | internal virion protein | singleton | unknown function | unknown function | 1 | 19182 | 20273 |
| ARV77524.1 | MF074189_p18 | holin | phrog_873 | endolysin | head and packaging | 1 | 13395 | 13904 |
| ARV77557.1 | MF074189_p52 | hypothetical protein | singleton | unknown function | unknown function | -1 | 38399 | 38818 |
| ARV77562.1 | MF074189_p57 | ATPase | phrog_249 | porphyrin biosynthesis | moron, auxiliary metabolic gene and host takeover | -1 | 41916 | 43121 |
| ARV77511.1 | MF074189_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5117 | 5230 |
| ARV77525.1 | MF074189_p19 | spanin | singleton | unknown function | unknown function | 1 | 13700 | 14146 |
| ARV77550.1 | MF074189_p45 | hypothetical protein | singleton | unknown function | unknown function | -1 | 35716 | 35904 |
| ARV77564.1 | MF074189_p59 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43581 | 43949 |
| ARV77510.1 | MF074189_p5 | hypothetical protein | phrog_8161 | unknown function | unknown function | 1 | 4860 | 5117 |
| ARV77556.1 | MF074189_p51 | hypothetical protein | singleton | unknown function | unknown function | -1 | 38149 | 38547 |
| ARV77547.1 | MF074189_p42 | DNA binding protein | singleton | unknown function | unknown function | 1 | 34454 | 34858 |
| ARV77559.1 | MF074189_p54 | hypothetical protein | phrog_25534 | unknown function | unknown function | -1 | 39185 | 39574 |
| ARV77517.1 | MF074189_p12 | tail tubular protein A | phrog_2941 | virion structural protein | head and packaging | 1 | 9356 | 9973 |
| ARV77520.1 | MF074189_p14 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10353 | 10949 |
| ARV77542.1 | MF074189_p37 | hypothetical protein | singleton | unknown function | unknown function | -1 | 31939 | 32133 |
| ARV77516.1 | MF074189_p11 | hypothetical protein | phrog_3982 | unknown function | unknown function | 1 | 9042 | 9356 |
| ARV77546.1 | MF074189_p41 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34171 | 34353 |
| ARV77543.1 | MF074189_p38 | hypothetical protein | phrog_4826 | unknown function | unknown function | -1 | 32126 | 32593 |
| ARV77521.1 | MF074189_p15 | host-binding tail fiber | singleton | unknown function | unknown function | 1 | 10942 | 12117 |
| ARV77545.1 | MF074189_p40 | hypothetical protein | singleton | unknown function | unknown function | -1 | 33932 | 34174 |
| ARV77560.1 | MF074189_p55 | holliday junction resolvase | phrog_1770 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 40006 | 40530 |
| ARV77551.1 | MF074189_p46 | hypothetical protein | singleton | unknown function | unknown function | -1 | 35901 | 36011 |
| ARV77558.1 | MF074189_p53 | thymidylate kinase | singleton | unknown function | unknown function | -1 | 38885 | 39181 |
| ARV77518.1 | MF074189_p13 | minor tail protein | phrog_240 | head protein | head and packaging | 1 | 9970 | 10350 |
| ARV77563.1 | MF074189_p58 | hypothetical protein | singleton | unknown function | unknown function | -1 | 42460 | 42657 |
| ARV77533.1 | MF074189_p28 | integrase | phrog_1 | integrase | integration and excision | -1 | 22220 | 23122 |
| ARV77541.1 | MF074189_p36 | HNH endonuclease | singleton | unknown function | unknown function | -1 | 31641 | 31853 |
| ARV77531.1 | MF074189_p25 | internal virion protein | singleton | unknown function | unknown function | 1 | 20279 | 21823 |
| ARV77552.1 | MF074189_p47 | hypothetical protein | singleton | unknown function | unknown function | -1 | 36016 | 36555 |
| ARV77528.1 | MF074189_p22 | tailspike protein | phrog_4287 | DNA ejection protein | DNA, RNA and nucleotide metabolism | 1 | 16228 | 17634 |
| ARV77514.1 | MF074189_p9 | hypothetical protein | phrog_22789 | unknown function | unknown function | 1 | 7449 | 7724 |
| ARV77507.1 | MF074189_p2 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 393 | 2090 |
| ARV77512.1 | MF074189_p7 | scaffold protein | phrog_3927 | head scaffolding protein | head and packaging | 1 | 5268 | 6317 |
| ARV77515.1 | MF074189_p10 | GDSL/SGNH hydrolase family protein | phrog_8480 | lysophospholipase L1-like esterase | other | 1 | 7728 | 9038 |
| ARV77532.1 | MF074189_p27 | hypothetical protein | singleton | unknown function | unknown function | -1 | 22018 | 22218 |
| ARV77549.1 | MF074189_p44 | tellurite-resistance protein | phrog_632 | tellurite resistance | moron, auxiliary metabolic gene and host takeover | -1 | 35224 | 35664 |
| ARV77527.1 | MF074189_p21 | hypothetical protein | phrog_22172 | unknown function | unknown function | 1 | 15873 | 16235 |
| ARV77509.1 | MF074189_p4 | portal protein | phrog_1216 | portal protein | head and packaging | 1 | 2713 | 4863 |
| ARV77529.1 | MF074189_p23 | internal virion protein | singleton | unknown function | unknown function | 1 | 17638 | 19182 |
| ARV77540.1 | MF074189_p35 | Cas4-like exonuclease | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 30475 | 31644 |