Genomic map of Shigella phage vB_SsoS-ISF002 (MF093736)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MF093736
Definition
Shigella phage vB_SsoS-ISF002, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Drexlerviridae; Tunavirinae; Tunavirus; Shigella virus ISF002.
DB of origin
NUCCORE
Length
50564
Host Name
Shigella sonnei
Host domain
Bacteria
Is prophage?
undef
Number of proteins
76
%GC
45.53
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ASD50928.1 MF093736_p44 hypothetical protein phrog_6666 unknown function unknown function -1 35999 36160
ASD50938.1 MF093736_p54 hypothetical protein phrog_986 RNA-binding protein DNA, RNA and nucleotide metabolism -1 40185 40472
ASD50924.1 MF093736_p40 terminase large subunit phrog_38 terminase large subunit head and packaging -1 33388 34956
ASD50950.1 MF093736_p66 DNA methylase phrog_757 DNA methyltransferase other 1 45218 45922
ASD50910.1 MF093736_p26 hypothetical protein phrog_680 tail length tape measure protein tail -1 24407 24676
ASD50945.1 MF093736_p61 hypothetical protein phrog_11449 unknown function unknown function -1 42550 42780
ASD50960.1 MF093736_p76 hypothetical protein phrog_2684 unknown function unknown function 1 48707 49123
ASD50888.1 MF093736_p4 hypothetical protein phrog_2877 holin lysis -1 1923 2138
ASD50889.1 MF093736_p5 hypothetical protein phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism -1 2497 3648
ASD50947.1 MF093736_p63 hypothetical protein phrog_7421 unknown function unknown function -1 43332 43526
ASD50930.1 MF093736_p46 hypothetical protein phrog_303 unknown function unknown function -1 36528 36758
ASD50952.1 MF093736_p68 hypothetical protein phrog_3623 unknown function unknown function 1 46184 46369
ASD50956.1 MF093736_p72 hypothetical protein phrog_6503 unknown function unknown function 1 47431 47631
ASD50900.1 MF093736_p16 recombination protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 11890 12537
ASD50906.1 MF093736_p22 minor tail protein phrog_30 minor tail protein tail -1 19545 20279
ASD50958.1 MF093736_p74 hypothetical protein phrog_4344 unknown function unknown function 1 48186 48410
ASD50901.1 MF093736_p17 hypothetical protein phrog_412 exonuclease VIII DNA, RNA and nucleotide metabolism -1 12612 13676
ASD50896.1 MF093736_p12 hypothetical protein phrog_2856 transcriptional regulator transcription regulation 1 8039 8491
ASD50893.1 MF093736_p9 DNA N-6-adenine-methyltransferase phrog_111 DNA methyltransferase other -1 4733 5446
ASD50940.1 MF093736_p56 hypothetical protein phrog_7116 unknown function unknown function -1 40700 41206
ASD50908.1 MF093736_p24 minor tail protein phrog_14 minor tail protein tail -1 21138 21491
ASD50899.1 MF093736_p15 hypothetical protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 11431 11844
ASD50902.1 MF093736_p18 lipoprotein phrog_4281 unknown function unknown function 1 14204 14434
ASD50916.1 MF093736_p32 hypothetical protein phrog_302 virion structural protein head and packaging -1 27019 27432
ASD50937.1 MF093736_p53 hypothetical protein phrog_10580 unknown function unknown function -1 39550 40188
ASD50959.1 MF093736_p75 hypothetical protein phrog_9085 unknown function unknown function 1 48414 48626
ASD50897.1 MF093736_p13 DNA primase/helicase phrog_510 DNA primase DNA, RNA and nucleotide metabolism 1 8568 9488
ASD50887.1 MF093736_p3 hypothetical protein phrog_7 endolysin lysis -1 1435 1923
ASD50911.1 MF093736_p27 hypothetical protein phrog_569 tail length tape measure protein tail -1 24724 25041
ASD50949.1 MF093736_p65 hypothetical protein phrog_11083 unknown function unknown function -1 43940 44515
ASD50886.1 MF093736_p2 hypothetical protein phrog_1804 Rz-like spanin lysis -1 908 1435
ASD50891.1 MF093736_p7 hypothetical protein phrog_2180 unknown function unknown function -1 4209 4433
ASD50920.1 MF093736_p36 hypothetical protein phrog_1989 unknown function unknown function -1 29694 30170
ASD50944.1 MF093736_p60 hypothetical protein phrog_6080 unknown function unknown function -1 42316 42543
ASD50898.1 MF093736_p14 hypothetical protein phrog_1980 tail fiber protein tail 1 9589 11382
ASD50929.1 MF093736_p45 hypothetical protein phrog_4927 unknown function unknown function -1 36325 36528
ASD50942.1 MF093736_p58 hypothetical protein phrog_11551 unknown function unknown function -1 41838 42029
ASD50933.1 MF093736_p49 hypothetical protein phrog_139 deoxynucleoside monophosphate kinase other -1 37381 37953
ASD50954.1 MF093736_p70 hypothetical protein phrog_35282 unknown function unknown function 1 46822 46995
ASD50948.1 MF093736_p64 hypothetical protein phrog_18675 unknown function unknown function -1 43598 43927
ASD50918.1 MF093736_p34 hypothetical protein phrog_264 major head protein head and packaging -1 27815 28774
ASD50932.1 MF093736_p48 hypothetical protein phrog_10456 unknown function unknown function -1 37099 37308
ASD50931.1 MF093736_p47 hypothetical protein phrog_9709 unknown function unknown function -1 36758 37102
ASD50890.1 MF093736_p6 hypothetical protein phrog_4596 unknown function unknown function -1 3727 4014
ASD50895.1 MF093736_p11 ATP-dependent helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 5927 7939
ASD50904.1 MF093736_p20 tail fiber protein phrog_31 central tail fiber J tail -1 15422 18871
ASD50921.1 MF093736_p37 hypothetical protein phrog_530 head maturation protease head and packaging -1 30182 31294
ASD50943.1 MF093736_p59 hypothetical protein phrog_8628 unknown function unknown function -1 42039 42212
ASD50919.1 MF093736_p35 hypothetical protein phrog_1989 unknown function unknown function -1 28867 29634
ASD50951.1 MF093736_p67 hypothetical protein phrog_7717 unknown function unknown function 1 45983 46168
ASD50953.1 MF093736_p69 hypothetical protein phrog_20265 unknown function unknown function 1 46445 46825
ASD50927.1 MF093736_p43 hypothetical protein phrog_2919 unknown function unknown function -1 35833 36018
ASD50915.1 MF093736_p31 hypothetical protein phrog_161 head closure Hc1 connector -1 26651 27022
ASD50925.1 MF093736_p41 terminase small subunit phrog_606 terminase small subunit head and packaging -1 34995 35519
ASD50922.1 MF093736_p38 minor capsid protein phrog_324 head morphogenesis head and packaging -1 31297 32058
ASD50926.1 MF093736_p42 hypothetical protein phrog_5976 unknown function unknown function -1 35604 35831
ASD50914.1 MF093736_p30 hypothetical protein phrog_169 tail completion or Neck1 protein connector -1 26215 26658
ASD50946.1 MF093736_p62 hypothetical protein phrog_12951 unknown function unknown function -1 42859 43329
ASD50885.1 MF093736_p1 hypothetical protein phrog_2794 unknown function unknown function 1 209 616
ASD50935.1 MF093736_p51 hypothetical protein phrog_10642 unknown function unknown function -1 38679 39125
ASD50934.1 MF093736_p50 morphogenetic protein phrog_415 polynucleotide kinase other -1 38062 38595
ASD50936.1 MF093736_p52 hypothetical protein phrog_11330 unknown function unknown function -1 39183 39401
ASD50905.1 MF093736_p21 tail assembly protein phrog_32 tail assembly protein tail -1 18949 19548
ASD50955.1 MF093736_p71 hypothetical protein phrog_11577 unknown function unknown function 1 47067 47438
ASD50939.1 MF093736_p55 hypothetical protein phrog_5579 unknown function unknown function -1 40551 40700
ASD50909.1 MF093736_p25 tail tape measure protein phrog_24 tail length tape measure protein tail -1 21494 24367
ASD50923.1 MF093736_p39 portal protein phrog_146 portal protein head and packaging -1 32048 33331
ASD50907.1 MF093736_p23 minor tail protein phrog_18 minor tail protein tail -1 20276 21058
ASD50892.1 MF093736_p8 hypothetical protein phrog_2676 unknown function unknown function -1 4485 4733
ASD50941.1 MF093736_p57 hypothetical protein phrog_9595 unknown function unknown function -1 41278 41766
ASD50913.1 MF093736_p29 hypothetical protein phrog_179 tail terminator connector -1 25827 26225
ASD50894.1 MF093736_p10 hypothetical protein phrog_824 unknown function unknown function -1 5514 5930
ASD50917.1 MF093736_p33 hypothetical protein phrog_2716 unknown function unknown function -1 27475 27765
ASD50912.1 MF093736_p28 hypothetical protein phrog_584 major tail protein tail -1 25156 25824
ASD50903.1 MF093736_p19 hypothetical protein phrog_1265 membrane protein moron, auxiliary metabolic gene and host takeover 1 14437 15393
ASD50957.1 MF093736_p73 hypothetical protein phrog_10555 unknown function unknown function 1 47649 47969