| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF093736 |
Definition |
Shigella phage vB_SsoS-ISF002, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Drexlerviridae; Tunavirinae; Tunavirus; Shigella virus ISF002. |
DB of origin |
NUCCORE |
Length |
50564 |
Host Name |
Shigella sonnei |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
76 |
%GC |
45.53 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ASD50928.1 | MF093736_p44 | hypothetical protein | phrog_6666 | unknown function | unknown function | -1 | 35999 | 36160 |
| ASD50938.1 | MF093736_p54 | hypothetical protein | phrog_986 | RNA-binding protein | DNA, RNA and nucleotide metabolism | -1 | 40185 | 40472 |
| ASD50924.1 | MF093736_p40 | terminase large subunit | phrog_38 | terminase large subunit | head and packaging | -1 | 33388 | 34956 |
| ASD50950.1 | MF093736_p66 | DNA methylase | phrog_757 | DNA methyltransferase | other | 1 | 45218 | 45922 |
| ASD50910.1 | MF093736_p26 | hypothetical protein | phrog_680 | tail length tape measure protein | tail | -1 | 24407 | 24676 |
| ASD50945.1 | MF093736_p61 | hypothetical protein | phrog_11449 | unknown function | unknown function | -1 | 42550 | 42780 |
| ASD50960.1 | MF093736_p76 | hypothetical protein | phrog_2684 | unknown function | unknown function | 1 | 48707 | 49123 |
| ASD50888.1 | MF093736_p4 | hypothetical protein | phrog_2877 | holin | lysis | -1 | 1923 | 2138 |
| ASD50889.1 | MF093736_p5 | hypothetical protein | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | -1 | 2497 | 3648 |
| ASD50947.1 | MF093736_p63 | hypothetical protein | phrog_7421 | unknown function | unknown function | -1 | 43332 | 43526 |
| ASD50930.1 | MF093736_p46 | hypothetical protein | phrog_303 | unknown function | unknown function | -1 | 36528 | 36758 |
| ASD50952.1 | MF093736_p68 | hypothetical protein | phrog_3623 | unknown function | unknown function | 1 | 46184 | 46369 |
| ASD50956.1 | MF093736_p72 | hypothetical protein | phrog_6503 | unknown function | unknown function | 1 | 47431 | 47631 |
| ASD50900.1 | MF093736_p16 | recombination protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 11890 | 12537 |
| ASD50906.1 | MF093736_p22 | minor tail protein | phrog_30 | minor tail protein | tail | -1 | 19545 | 20279 |
| ASD50958.1 | MF093736_p74 | hypothetical protein | phrog_4344 | unknown function | unknown function | 1 | 48186 | 48410 |
| ASD50901.1 | MF093736_p17 | hypothetical protein | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | -1 | 12612 | 13676 |
| ASD50896.1 | MF093736_p12 | hypothetical protein | phrog_2856 | transcriptional regulator | transcription regulation | 1 | 8039 | 8491 |
| ASD50893.1 | MF093736_p9 | DNA N-6-adenine-methyltransferase | phrog_111 | DNA methyltransferase | other | -1 | 4733 | 5446 |
| ASD50940.1 | MF093736_p56 | hypothetical protein | phrog_7116 | unknown function | unknown function | -1 | 40700 | 41206 |
| ASD50908.1 | MF093736_p24 | minor tail protein | phrog_14 | minor tail protein | tail | -1 | 21138 | 21491 |
| ASD50899.1 | MF093736_p15 | hypothetical protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 11431 | 11844 |
| ASD50902.1 | MF093736_p18 | lipoprotein | phrog_4281 | unknown function | unknown function | 1 | 14204 | 14434 |
| ASD50916.1 | MF093736_p32 | hypothetical protein | phrog_302 | virion structural protein | head and packaging | -1 | 27019 | 27432 |
| ASD50937.1 | MF093736_p53 | hypothetical protein | phrog_10580 | unknown function | unknown function | -1 | 39550 | 40188 |
| ASD50959.1 | MF093736_p75 | hypothetical protein | phrog_9085 | unknown function | unknown function | 1 | 48414 | 48626 |
| ASD50897.1 | MF093736_p13 | DNA primase/helicase | phrog_510 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 8568 | 9488 |
| ASD50887.1 | MF093736_p3 | hypothetical protein | phrog_7 | endolysin | lysis | -1 | 1435 | 1923 |
| ASD50911.1 | MF093736_p27 | hypothetical protein | phrog_569 | tail length tape measure protein | tail | -1 | 24724 | 25041 |
| ASD50949.1 | MF093736_p65 | hypothetical protein | phrog_11083 | unknown function | unknown function | -1 | 43940 | 44515 |
| ASD50886.1 | MF093736_p2 | hypothetical protein | phrog_1804 | Rz-like spanin | lysis | -1 | 908 | 1435 |
| ASD50891.1 | MF093736_p7 | hypothetical protein | phrog_2180 | unknown function | unknown function | -1 | 4209 | 4433 |
| ASD50920.1 | MF093736_p36 | hypothetical protein | phrog_1989 | unknown function | unknown function | -1 | 29694 | 30170 |
| ASD50944.1 | MF093736_p60 | hypothetical protein | phrog_6080 | unknown function | unknown function | -1 | 42316 | 42543 |
| ASD50898.1 | MF093736_p14 | hypothetical protein | phrog_1980 | tail fiber protein | tail | 1 | 9589 | 11382 |
| ASD50929.1 | MF093736_p45 | hypothetical protein | phrog_4927 | unknown function | unknown function | -1 | 36325 | 36528 |
| ASD50942.1 | MF093736_p58 | hypothetical protein | phrog_11551 | unknown function | unknown function | -1 | 41838 | 42029 |
| ASD50933.1 | MF093736_p49 | hypothetical protein | phrog_139 | deoxynucleoside monophosphate kinase | other | -1 | 37381 | 37953 |
| ASD50954.1 | MF093736_p70 | hypothetical protein | phrog_35282 | unknown function | unknown function | 1 | 46822 | 46995 |
| ASD50948.1 | MF093736_p64 | hypothetical protein | phrog_18675 | unknown function | unknown function | -1 | 43598 | 43927 |
| ASD50918.1 | MF093736_p34 | hypothetical protein | phrog_264 | major head protein | head and packaging | -1 | 27815 | 28774 |
| ASD50932.1 | MF093736_p48 | hypothetical protein | phrog_10456 | unknown function | unknown function | -1 | 37099 | 37308 |
| ASD50931.1 | MF093736_p47 | hypothetical protein | phrog_9709 | unknown function | unknown function | -1 | 36758 | 37102 |
| ASD50890.1 | MF093736_p6 | hypothetical protein | phrog_4596 | unknown function | unknown function | -1 | 3727 | 4014 |
| ASD50895.1 | MF093736_p11 | ATP-dependent helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 5927 | 7939 |
| ASD50904.1 | MF093736_p20 | tail fiber protein | phrog_31 | central tail fiber J | tail | -1 | 15422 | 18871 |
| ASD50921.1 | MF093736_p37 | hypothetical protein | phrog_530 | head maturation protease | head and packaging | -1 | 30182 | 31294 |
| ASD50943.1 | MF093736_p59 | hypothetical protein | phrog_8628 | unknown function | unknown function | -1 | 42039 | 42212 |
| ASD50919.1 | MF093736_p35 | hypothetical protein | phrog_1989 | unknown function | unknown function | -1 | 28867 | 29634 |
| ASD50951.1 | MF093736_p67 | hypothetical protein | phrog_7717 | unknown function | unknown function | 1 | 45983 | 46168 |
| ASD50953.1 | MF093736_p69 | hypothetical protein | phrog_20265 | unknown function | unknown function | 1 | 46445 | 46825 |
| ASD50927.1 | MF093736_p43 | hypothetical protein | phrog_2919 | unknown function | unknown function | -1 | 35833 | 36018 |
| ASD50915.1 | MF093736_p31 | hypothetical protein | phrog_161 | head closure Hc1 | connector | -1 | 26651 | 27022 |
| ASD50925.1 | MF093736_p41 | terminase small subunit | phrog_606 | terminase small subunit | head and packaging | -1 | 34995 | 35519 |
| ASD50922.1 | MF093736_p38 | minor capsid protein | phrog_324 | head morphogenesis | head and packaging | -1 | 31297 | 32058 |
| ASD50926.1 | MF093736_p42 | hypothetical protein | phrog_5976 | unknown function | unknown function | -1 | 35604 | 35831 |
| ASD50914.1 | MF093736_p30 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | -1 | 26215 | 26658 |
| ASD50946.1 | MF093736_p62 | hypothetical protein | phrog_12951 | unknown function | unknown function | -1 | 42859 | 43329 |
| ASD50885.1 | MF093736_p1 | hypothetical protein | phrog_2794 | unknown function | unknown function | 1 | 209 | 616 |
| ASD50935.1 | MF093736_p51 | hypothetical protein | phrog_10642 | unknown function | unknown function | -1 | 38679 | 39125 |
| ASD50934.1 | MF093736_p50 | morphogenetic protein | phrog_415 | polynucleotide kinase | other | -1 | 38062 | 38595 |
| ASD50936.1 | MF093736_p52 | hypothetical protein | phrog_11330 | unknown function | unknown function | -1 | 39183 | 39401 |
| ASD50905.1 | MF093736_p21 | tail assembly protein | phrog_32 | tail assembly protein | tail | -1 | 18949 | 19548 |
| ASD50955.1 | MF093736_p71 | hypothetical protein | phrog_11577 | unknown function | unknown function | 1 | 47067 | 47438 |
| ASD50939.1 | MF093736_p55 | hypothetical protein | phrog_5579 | unknown function | unknown function | -1 | 40551 | 40700 |
| ASD50909.1 | MF093736_p25 | tail tape measure protein | phrog_24 | tail length tape measure protein | tail | -1 | 21494 | 24367 |
| ASD50923.1 | MF093736_p39 | portal protein | phrog_146 | portal protein | head and packaging | -1 | 32048 | 33331 |
| ASD50907.1 | MF093736_p23 | minor tail protein | phrog_18 | minor tail protein | tail | -1 | 20276 | 21058 |
| ASD50892.1 | MF093736_p8 | hypothetical protein | phrog_2676 | unknown function | unknown function | -1 | 4485 | 4733 |
| ASD50941.1 | MF093736_p57 | hypothetical protein | phrog_9595 | unknown function | unknown function | -1 | 41278 | 41766 |
| ASD50913.1 | MF093736_p29 | hypothetical protein | phrog_179 | tail terminator | connector | -1 | 25827 | 26225 |
| ASD50894.1 | MF093736_p10 | hypothetical protein | phrog_824 | unknown function | unknown function | -1 | 5514 | 5930 |
| ASD50917.1 | MF093736_p33 | hypothetical protein | phrog_2716 | unknown function | unknown function | -1 | 27475 | 27765 |
| ASD50912.1 | MF093736_p28 | hypothetical protein | phrog_584 | major tail protein | tail | -1 | 25156 | 25824 |
| ASD50903.1 | MF093736_p19 | hypothetical protein | phrog_1265 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 14437 | 15393 |
| ASD50957.1 | MF093736_p73 | hypothetical protein | phrog_10555 | unknown function | unknown function | 1 | 47649 | 47969 |