| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF140398 |
Definition |
Mycobacterium phage Amohnition, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Timquatrovirus; unclassified Timquatrovirus. |
DB of origin |
NUCCORE |
Length |
61761 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
94 |
%GC |
67.24 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ASR86294.1 | MF140398_p12 | head-to-tail connector protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 8913 | 9299 |
| ASR86315.1 | MF140398_p34 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 29885 | 30115 |
| ASR86360.1 | MF140398_p79 | hypothetical protein | phrog_5288 | unknown function | unknown function | 1 | 53677 | 53940 |
| ASR86345.1 | MF140398_p64 | hypothetical protein | phrog_1911 | unknown function | unknown function | 1 | 43500 | 44012 |
| ASR86298.1 | MF140398_p16 | major tail protein | phrog_117 | major tail protein | tail | 1 | 10531 | 11145 |
| ASR86286.1 | MF140398_p4 | hypothetical protein | phrog_2622 | unknown function | unknown function | 1 | 980 | 1183 |
| ASR86291.1 | MF140398_p9 | hypothetical protein | phrog_1757 | unknown function | unknown function | 1 | 6891 | 7082 |
| ASR86326.1 | MF140398_p45 | CRO protein | phrog_1702 | transcriptional repressor | transcription regulation | 1 | 36255 | 36491 |
| ASR86352.1 | MF140398_p71 | hypothetical protein | phrog_549 | unknown function | unknown function | 1 | 50158 | 50541 |
| ASR86346.1 | MF140398_p65 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 44113 | 44352 |
| ASR86302.1 | MF140398_p21 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 17620 | 19395 |
| ASR86341.1 | MF140398_p60 | hypothetical protein | phrog_3492 | unknown function | unknown function | 1 | 42444 | 42749 |
| ASR86311.1 | MF140398_p30 | holin | phrog_565 | holin | lysis | 1 | 27721 | 28185 |
| ASR86371.1 | MF140398_p90 | hypothetical protein | phrog_12202 | unknown function | unknown function | 1 | 59492 | 59614 |
| ASR86328.1 | MF140398_p47 | hypothetical protein | phrog_2908 | unknown function | unknown function | 1 | 36704 | 37051 |
| ASR86299.1 | MF140398_p17 | tail assembly chaperone | phrog_1326 | tail assembly chaperone | tail | 1 | 11325 | 12196 |
| ASR86327.1 | MF140398_p46 | excise | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 36488 | 36700 |
| ASR86288.1 | MF140398_p6 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 1387 | 2811 |
| ASR86308.1 | MF140398_p27 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 24876 | 25247 |
| ASR86364.1 | MF140398_p83 | hypothetical protein | phrog_2822 | unknown function | unknown function | 1 | 55743 | 56357 |
| ASR86343.1 | MF140398_p62 | hypothetical protein | phrog_1581 | unknown function | unknown function | 1 | 43082 | 43294 |
| ASR86312.1 | MF140398_p31 | hypothetical protein | phrog_3413 | unknown function | unknown function | 1 | 28182 | 28520 |
| ASR86306.1 | MF140398_p25 | minor tail protein | phrog_746 | minor tail protein | tail | 1 | 21373 | 23781 |
| ASR86293.1 | MF140398_p11 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 7821 | 8753 |
| ASR86300.1 | MF140398_p19 | tape measure protein | phrog_971 | endolysin | lysis | 1 | 12196 | 16386 |
| ASR86336.1 | MF140398_p55 | hypothetical protein | phrog_3186 | unknown function | unknown function | 1 | 39941 | 40408 |
| ASR86318.1 | MF140398_p37 | hypothetical protein | phrog_26689 | unknown function | unknown function | 1 | 31006 | 31146 |
| ASR86348.1 | MF140398_p67 | DNA primase/polymerase | phrog_2478 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 44727 | 47348 |
| ASR86329.1 | MF140398_p48 | hypothetical protein | phrog_6733 | unknown function | unknown function | 1 | 37124 | 37360 |
| ASR86361.1 | MF140398_p80 | hypothetical protein | phrog_666 | unknown function | unknown function | 1 | 53937 | 54149 |
| ASR86285.1 | MF140398_p3 | hypothetical protein | phrog_2074 | unknown function | unknown function | 1 | 416 | 673 |
| ASR86350.1 | MF140398_p69 | hypothetical protein | phrog_3478 | unknown function | unknown function | 1 | 48438 | 49046 |
| ASR86338.1 | MF140398_p57 | DNA polymerase III subunit | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 40704 | 41258 |
| ASR86283.1 | MF140398_p1 | hypothetical protein | phrog_5391 | unknown function | unknown function | 1 | 70 | 210 |
| ASR86331.1 | MF140398_p50 | hypothetical protein | phrog_3903 | unknown function | unknown function | 1 | 37521 | 37778 |
| ASR86375.1 | MF140398_p94 | HNH endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 61401 | 61697 |
| ASR86355.1 | MF140398_p74 | hypothetical protein | phrog_7658 | unknown function | unknown function | 1 | 51302 | 51571 |
| ASR86330.1 | MF140398_p49 | hypothetical protein | phrog_2654 | unknown function | unknown function | 1 | 37357 | 37524 |
| ASR86356.1 | MF140398_p75 | hypothetical protein | phrog_5546 | unknown function | unknown function | 1 | 51628 | 51840 |
| ASR86301.1 | MF140398_p20 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 16493 | 17629 |
| ASR86332.1 | MF140398_p51 | HTH DNA binding protein | phrog_2286 | unknown function | unknown function | 1 | 37775 | 38563 |
| ASR86314.1 | MF140398_p33 | endonuclease | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 28755 | 29888 |
| ASR86305.1 | MF140398_p24 | minor tail protein | phrog_1736 | minor tail protein | tail | 1 | 21059 | 21373 |
| ASR86335.1 | MF140398_p54 | hypothetical protein | phrog_478 | site-specific recombination directionality factor RDF | integration and excision | 1 | 39555 | 39944 |
| ASR86309.1 | MF140398_p28 | lysin A | phrog_1519 | endolysin | lysis | 1 | 25269 | 26972 |
| ASR86353.1 | MF140398_p72 | hypothetical protein | phrog_1338 | unknown function | unknown function | 1 | 50538 | 50810 |
| ASR86359.1 | MF140398_p78 | hypothetical protein | phrog_7731 | unknown function | unknown function | 1 | 53282 | 53680 |
| ASR86316.1 | MF140398_p35 | HTH DNA binding protein | phrog_2311 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 30303 | 30722 |
| ASR86370.1 | MF140398_p89 | hypothetical protein | phrog_4560 | unknown function | unknown function | 1 | 59241 | 59492 |
| ASR86362.1 | MF140398_p81 | hypothetical protein | phrog_19138 | unknown function | unknown function | 1 | 54157 | 54450 |
| ASR86297.1 | MF140398_p15 | head-to-tail connector protein | phrog_123 | tail terminator | connector | 1 | 9965 | 10381 |
| ASR86342.1 | MF140398_p61 | hypothetical protein | phrog_5466 | unknown function | unknown function | 1 | 42807 | 43085 |
| ASR86304.1 | MF140398_p23 | minor tail protein | phrog_1565 | minor tail protein | tail | 1 | 19971 | 21053 |
| ASR86295.1 | MF140398_p13 | head-to-tail connector protein | phrog_763 | head-tail adaptor | connector | 1 | 9299 | 9697 |
| ASR86289.1 | MF140398_p7 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2823 | 4376 |
| ASR86372.1 | MF140398_p91 | DNA binding domain protein | phrog_4095 | unknown function | unknown function | 1 | 59731 | 60438 |
| ASR86320.1 | MF140398_p39 | hypothetical protein | singleton | unknown function | unknown function | -1 | 32189 | 32428 |
| ASR86321.1 | MF140398_p40 | hypothetical protein | phrog_12017 | unknown function | unknown function | -1 | 32498 | 32710 |
| ASR86324.1 | MF140398_p43 | membrane protein | phrog_950 | unknown function | unknown function | -1 | 34757 | 35581 |
| ASR86368.1 | MF140398_p87 | hypothetical protein | phrog_2433 | unknown function | unknown function | 1 | 57523 | 58212 |
| ASR86376.1 | MF140398_p18 | tail assembly chaperone | phrog_1861 | unknown function | unknown function | 1 | 11325 | 11780 |
| ASR86334.1 | MF140398_p53 | hypothetical protein | phrog_2781 | unknown function | unknown function | 1 | 38811 | 39545 |
| ASR86323.1 | MF140398_p42 | hypothetical protein | phrog_8155 | unknown function | unknown function | 1 | 34438 | 34680 |
| ASR86325.1 | MF140398_p44 | immunity repressor | phrog_1746 | transcriptional repressor | transcription regulation | -1 | 35639 | 36010 |
| ASR86287.1 | MF140398_p5 | terminase small subunit | phrog_1459 | terminase small subunit | head and packaging | 1 | 1167 | 1403 |
| ASR86366.1 | MF140398_p85 | hypothetical protein | phrog_16857 | unknown function | unknown function | 1 | 56925 | 57068 |
| ASR86367.1 | MF140398_p86 | hypothetical protein | phrog_2074 | unknown function | unknown function | 1 | 57065 | 57322 |
| ASR86313.1 | MF140398_p32 | hypothetical protein | phrog_1738 | unknown function | unknown function | 1 | 28517 | 28768 |
| ASR86339.1 | MF140398_p58 | hypothetical protein | phrog_2870 | unknown function | unknown function | 1 | 41255 | 41578 |
| ASR86344.1 | MF140398_p63 | hypothetical protein | phrog_2388 | unknown function | unknown function | 1 | 43291 | 43416 |
| ASR86354.1 | MF140398_p73 | hypothetical protein | phrog_21827 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 50844 | 51173 |
| ASR86303.1 | MF140398_p22 | minor tail protein | phrog_1697 | minor tail protein | tail | 1 | 19395 | 19892 |
| ASR86363.1 | MF140398_p82 | RNA ligase | phrog_1075 | tRNA splicing ligase | DNA, RNA and nucleotide metabolism | 1 | 54551 | 55741 |
| ASR86337.1 | MF140398_p56 | hypothetical protein | phrog_1956 | unknown function | unknown function | 1 | 40401 | 40691 |
| ASR86317.1 | MF140398_p36 | hypothetical protein | phrog_4112 | unknown function | unknown function | 1 | 30719 | 31009 |
| ASR86319.1 | MF140398_p38 | queuine tRNA-glycosyltransferase | phrog_1279 | queuine tRNA-ribosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 31281 | 32135 |
| ASR86369.1 | MF140398_p88 | hypothetical protein | phrog_30522 | unknown function | unknown function | 1 | 58331 | 59011 |
| ASR86307.1 | MF140398_p26 | hypothetical protein | phrog_416 | minor tail protein | tail | 1 | 23778 | 24782 |
| ASR86290.1 | MF140398_p8 | capsid maturation protease | phrog_1752 | head maturation protease | head and packaging | 1 | 4405 | 6894 |
| ASR86322.1 | MF140398_p41 | integrase | phrog_1 | integrase | integration and excision | 1 | 33014 | 34399 |
| ASR86374.1 | MF140398_p93 | hypothetical protein | phrog_4561 | unknown function | unknown function | 1 | 61150 | 61401 |
| ASR86358.1 | MF140398_p77 | HTH DNA binding protein | phrog_2342 | unknown function | unknown function | 1 | 52452 | 53285 |
| ASR86347.1 | MF140398_p66 | HNH endonuclease | phrog_1571 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 44352 | 44687 |
| ASR86310.1 | MF140398_p29 | lysin B | phrog_102 | endolysin | lysis | 1 | 26969 | 27709 |
| ASR86296.1 | MF140398_p14 | head-to-tail connector protein | phrog_387 | neck protein | connector | 1 | 9687 | 9968 |
| ASR86349.1 | MF140398_p68 | resolvase | phrog_3055 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 47768 | 48445 |
| ASR86292.1 | MF140398_p10 | scaffolding protein | phrog_1793 | head scaffolding protein | head and packaging | 1 | 7198 | 7755 |
| ASR86373.1 | MF140398_p92 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 60821 | 61135 |
| ASR86340.1 | MF140398_p59 | exonuclease | phrog_1674 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 41578 | 42447 |
| ASR86284.1 | MF140398_p2 | hypothetical protein | phrog_2293 | unknown function | unknown function | 1 | 207 | 419 |
| ASR86333.1 | MF140398_p52 | WhiB family transcription factor | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 38560 | 38814 |
| ASR86351.1 | MF140398_p70 | HTH DNA binding protein | phrog_908 | unknown function | unknown function | 1 | 49043 | 50146 |
| ASR86357.1 | MF140398_p76 | hypothetical protein | phrog_6045 | unknown function | unknown function | 1 | 51971 | 52357 |
| ASR86365.1 | MF140398_p84 | hypothetical protein | phrog_2493 | unknown function | unknown function | 1 | 56350 | 56928 |