| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF140399 |
Definition |
Mycobacterium phage Bartholomew, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Pclasvirinae; Fishburnevirus; unclassified Fishburnevirus. |
DB of origin |
NUCCORE |
Length |
46484 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
77 |
%GC |
67.18 |
Number of singletons |
2 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ASR86396.1 | MF140399_p20 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 18144 | 19037 |
| ASR86409.1 | MF140399_p33 | antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 27939 | 28805 |
| ASR86385.1 | MF140399_p9 | head-to-tail connector complex protein | phrog_6553 | head closure Hc1 | connector | 1 | 6954 | 7304 |
| ASR86407.1 | MF140399_p31 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 27476 | 27709 |
| ASR86426.1 | MF140399_p51 | hypothetical protein | phrog_3821 | unknown function | unknown function | 1 | 35610 | 35894 |
| ASR86392.1 | MF140399_p15 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 9941 | 10859 |
| ASR86377.1 | MF140399_p1 | terminase small subunit | phrog_1496 | terminase small subunit | head and packaging | 1 | 55 | 444 |
| ASR86410.1 | MF140399_p34 | hypothetical protein | phrog_3507 | unknown function | unknown function | 1 | 28802 | 29101 |
| ASR86404.1 | MF140399_p28 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 25485 | 25844 |
| ASR86452.1 | MF140399_p77 | HNH endonuclease | phrog_1808 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 45893 | 46276 |
| ASR86401.1 | MF140399_p25 | lysin A | phrog_6707 | endolysin | lysis | 1 | 23120 | 24055 |
| ASR86422.1 | MF140399_p47 | hypothetical protein | phrog_4387 | unknown function | unknown function | 1 | 33532 | 33813 |
| ASR86388.1 | MF140399_p12 | hypothetical protein | phrog_2325 | minor tail protein | tail | 1 | 7932 | 8309 |
| ASR86428.1 | MF140399_p53 | DNA methylase | phrog_2060 | DNA methyltransferase | other | 1 | 36260 | 36583 |
| ASR86412.1 | MF140399_p36 | hypothetical protein | phrog_5015 | unknown function | unknown function | 1 | 29343 | 29744 |
| ASR86390.1 | MF140399_p14 | major tail protein | phrog_476 | major tail protein | tail | 1 | 8834 | 9832 |
| ASR86417.1 | MF140399_p41 | hypothetical protein | phrog_5559 | unknown function | unknown function | 1 | 31081 | 31260 |
| ASR86447.1 | MF140399_p72 | hypothetical protein | phrog_1900 | mobile element MPME | moron, auxiliary metabolic gene and host takeover | 1 | 44151 | 44489 |
| ASR86445.1 | MF140399_p70 | hypothetical protein | phrog_4550 | unknown function | unknown function | 1 | 43762 | 43935 |
| ASR86441.1 | MF140399_p66 | hypothetical protein | phrog_17037 | unknown function | unknown function | 1 | 42620 | 42763 |
| ASR86449.1 | MF140399_p74 | hypothetical protein | phrog_6617 | unknown function | unknown function | 1 | 44950 | 45288 |
| ASR86427.1 | MF140399_p52 | hypothetical protein | phrog_780 | unknown function | unknown function | 1 | 36036 | 36263 |
| ASR86431.1 | MF140399_p56 | hypothetical protein | phrog_5921 | unknown function | unknown function | 1 | 37477 | 37629 |
| ASR86430.1 | MF140399_p55 | HTH DNA binding protein | phrog_7170 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 36816 | 37484 |
| ASR86418.1 | MF140399_p42 | hypothetical protein | phrog_5806 | unknown function | unknown function | 1 | 31257 | 31388 |
| ASR86408.1 | MF140399_p32 | hypothetical protein | phrog_1622 | unknown function | unknown function | 1 | 27706 | 27942 |
| ASR86380.1 | MF140399_p4 | capsid maturation protease | phrog_2976 | head maturation protease | head and packaging | 1 | 3551 | 4888 |
| ASR86425.1 | MF140399_p50 | hypothetical protein | phrog_6109 | unknown function | unknown function | 1 | 35371 | 35613 |
| ASR86399.1 | MF140399_p23 | hypothetical protein | phrog_6374 | unknown function | unknown function | 1 | 22351 | 22500 |
| ASR86453.1 | MF140399_p43 | hypothetical protein | phrog_11260 | unknown function | unknown function | 1 | 31385 | 31471 |
| ASR86391.1 | MF140399_p16 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 9941 | 10540 |
| ASR86382.1 | MF140399_p6 | major capsid protein | phrog_1650 | major head protein | head and packaging | 1 | 5294 | 6238 |
| ASR86400.1 | MF140399_p24 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 22517 | 22879 |
| ASR86423.1 | MF140399_p48 | DNA translocase | phrog_6152 | unknown function | unknown function | 1 | 33810 | 34877 |
| ASR86420.1 | MF140399_p45 | exonuclease | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | 1 | 31617 | 32546 |
| ASR86429.1 | MF140399_p54 | hypothetical protein | phrog_17383 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 36580 | 36819 |
| ASR86439.1 | MF140399_p64 | hypothetical protein | phrog_10505 | unknown function | unknown function | 1 | 41796 | 41978 |
| ASR86415.1 | MF140399_p39 | hypothetical protein | phrog_4981 | unknown function | unknown function | 1 | 30540 | 30815 |
| ASR86378.1 | MF140399_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 413 | 2089 |
| ASR86402.1 | MF140399_p26 | lysin B | phrog_102 | endolysin | lysis | 1 | 24052 | 25218 |
| ASR86432.1 | MF140399_p57 | DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 37622 | 38488 |
| ASR86442.1 | MF140399_p67 | hypothetical protein | phrog_18896 | unknown function | unknown function | 1 | 42760 | 43086 |
| ASR86393.1 | MF140399_p17 | tape measure protein | phrog_2337 | tail length tape measure protein | tail | 1 | 10873 | 14643 |
| ASR86411.1 | MF140399_p35 | hypothetical protein | phrog_9041 | unknown function | unknown function | 1 | 29098 | 29346 |
| ASR86413.1 | MF140399_p37 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 29807 | 30310 |
| ASR86419.1 | MF140399_p44 | hypothetical protein | phrog_4702 | unknown function | unknown function | 1 | 31471 | 31620 |
| ASR86395.1 | MF140399_p19 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 16385 | 18121 |
| ASR86414.1 | MF140399_p38 | hypothetical protein | phrog_4656 | unknown function | unknown function | 1 | 30310 | 30543 |
| ASR86434.1 | MF140399_p59 | hypothetical protein | phrog_3599 | unknown function | unknown function | 1 | 39614 | 40162 |
| ASR86403.1 | MF140399_p27 | holin | phrog_443 | holin | lysis | 1 | 25240 | 25488 |
| ASR86406.1 | MF140399_p30 | immunity repressor | phrog_2328 | transcriptional repressor | transcription regulation | -1 | 26946 | 27347 |
| ASR86444.1 | MF140399_p69 | hypothetical protein | phrog_2202 | unknown function | unknown function | 1 | 43466 | 43765 |
| ASR86384.1 | MF140399_p8 | head-to-tail connector complex protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 6592 | 6954 |
| ASR86386.1 | MF140399_p10 | hypothetical protein | phrog_2322 | head-tail connector protein | connector | 1 | 7319 | 7663 |
| ASR86381.1 | MF140399_p5 | scaffolding protein | phrog_673 | head scaffolding protein | head and packaging | 1 | 4892 | 5257 |
| ASR86446.1 | MF140399_p71 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43932 | 44048 |
| ASR86438.1 | MF140399_p63 | hypothetical protein | phrog_2074 | unknown function | unknown function | 1 | 41542 | 41796 |
| ASR86397.1 | MF140399_p21 | minor tail protein | phrog_3493 | minor tail protein | tail | 1 | 19038 | 21299 |
| ASR86394.1 | MF140399_p18 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 14640 | 16385 |
| ASR86440.1 | MF140399_p65 | hypothetical protein | phrog_5855 | unknown function | unknown function | 1 | 42051 | 42551 |
| ASR86451.1 | MF140399_p76 | hypothetical protein | phrog_7285 | unknown function | unknown function | 1 | 45640 | 45888 |
| ASR86387.1 | MF140399_p11 | hypothetical protein | phrog_4307 | unknown function | unknown function | 1 | 7663 | 7932 |
| ASR86437.1 | MF140399_p62 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41394 | 41537 |
| ASR86450.1 | MF140399_p75 | hypothetical protein | phrog_1186 | unknown function | unknown function | 1 | 45285 | 45653 |
| ASR86435.1 | MF140399_p60 | hypothetical protein | phrog_20896 | unknown function | unknown function | 1 | 40159 | 40455 |
| ASR86398.1 | MF140399_p22 | minor tail protein | phrog_416 | minor tail protein | tail | 1 | 21299 | 22336 |
| ASR86405.1 | MF140399_p29 | integrase | phrog_1 | integrase | integration and excision | -1 | 25919 | 26812 |
| ASR86379.1 | MF140399_p3 | portal protein | phrog_113 | portal protein | head and packaging | 1 | 2106 | 3560 |
| ASR86389.1 | MF140399_p13 | head-to-tail connector complex protein | phrog_813 | head-tail adaptor | connector | 1 | 8306 | 8743 |
| ASR86448.1 | MF140399_p73 | hypothetical protein | phrog_4738 | transcriptional repressor | transcription regulation | 1 | 44548 | 44751 |
| ASR86424.1 | MF140399_p49 | resolvase | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 34874 | 35377 |
| ASR86443.1 | MF140399_p68 | hypothetical protein | phrog_2761 | unknown function | unknown function | 1 | 43158 | 43469 |
| ASR86433.1 | MF140399_p58 | HTH DNA binding protein | phrog_2447 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 38622 | 39617 |
| ASR86436.1 | MF140399_p61 | HTH DNA binding domain protein | phrog_908 | unknown function | unknown function | 1 | 40452 | 41354 |
| ASR86416.1 | MF140399_p40 | hypothetical protein | phrog_5803 | unknown function | unknown function | 1 | 30812 | 31084 |
| ASR86383.1 | MF140399_p7 | hypothetical protein | phrog_2322 | head-tail connector protein | connector | 1 | 6238 | 6588 |
| ASR86421.1 | MF140399_p46 | ssDNA binding protein | phrog_148 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 32543 | 33535 |