| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF140406 |
Definition |
Mycobacterium phage DarthP, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Timquatrovirus; unclassified Timquatrovirus. |
DB of origin |
NUCCORE |
Length |
61594 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
94 |
%GC |
67.24 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ASW31790.1 | MF140406_p43 | membrane protein | phrog_950 | unknown function | unknown function | -1 | 34669 | 35487 |
| ASW31764.1 | MF140406_p18 | tail assembly chaperone | phrog_1861 | unknown function | unknown function | 1 | 11325 | 11780 |
| ASW31779.1 | MF140406_p32 | hypothetical protein | phrog_1738 | unknown function | unknown function | 1 | 28439 | 28690 |
| ASW31757.1 | MF140406_p10 | scaffolding protein | phrog_1793 | head scaffolding protein | head and packaging | 1 | 7198 | 7755 |
| ASW31785.1 | MF140406_p38 | queuine tRNA-glycosyltransferase | phrog_1279 | queuine tRNA-ribosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 31203 | 32078 |
| ASW31767.1 | MF140406_p20 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 16442 | 17578 |
| ASW31819.1 | MF140406_p72 | hypothetical protein | phrog_1338 | unknown function | unknown function | 1 | 50395 | 50667 |
| ASW31792.1 | MF140406_p45 | CRO protein | phrog_1702 | transcriptional repressor | transcription regulation | 1 | 36145 | 36378 |
| ASW31784.1 | MF140406_p37 | hypothetical protein | phrog_26689 | unknown function | unknown function | 1 | 30928 | 31068 |
| ASW31813.1 | MF140406_p66 | HNH endonuclease | phrog_1571 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 44206 | 44541 |
| ASW31774.1 | MF140406_p27 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 24798 | 25169 |
| ASW31766.1 | MF140406_p19 | tape measure protein | phrog_971 | endolysin | lysis | 1 | 12196 | 16335 |
| ASW31787.1 | MF140406_p40 | HTH DNA binding protein | phrog_33884 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 32348 | 32755 |
| ASW31803.1 | MF140406_p56 | hypothetical protein | phrog_1956 | unknown function | unknown function | 1 | 40285 | 40575 |
| ASW31837.1 | MF140406_p90 | hypothetical protein | phrog_12202 | unknown function | unknown function | 1 | 59325 | 59447 |
| ASW31825.1 | MF140406_p78 | hypothetical protein | phrog_7731 | unknown function | unknown function | 1 | 53135 | 53533 |
| ASW31811.1 | MF140406_p64 | hypothetical protein | phrog_1911 | unknown function | unknown function | 1 | 43354 | 43866 |
| ASW31800.1 | MF140406_p53 | hypothetical protein | phrog_2781 | unknown function | unknown function | 1 | 38695 | 39429 |
| ASW31782.1 | MF140406_p35 | HTH DNA binding protein | phrog_2311 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 30225 | 30644 |
| ASW31808.1 | MF140406_p61 | hypothetical protein | phrog_5466 | unknown function | unknown function | 1 | 42661 | 42939 |
| ASW31821.1 | MF140406_p74 | hypothetical protein | phrog_7658 | unknown function | unknown function | 1 | 51155 | 51424 |
| ASW31771.1 | MF140406_p24 | minor tail protein | phrog_1736 | minor tail protein | tail | 1 | 21005 | 21319 |
| ASW31827.1 | MF140406_p80 | hypothetical protein | phrog_666 | unknown function | unknown function | 1 | 53790 | 54002 |
| ASW31817.1 | MF140406_p70 | HTH DNA binding protein | phrog_908 | unknown function | unknown function | 1 | 48900 | 50003 |
| ASW31755.1 | MF140406_p8 | capsid maturation protease | phrog_1752 | head maturation protease | head and packaging | 1 | 4321 | 6894 |
| ASW31836.1 | MF140406_p89 | hypothetical protein | phrog_4560 | unknown function | unknown function | 1 | 59074 | 59325 |
| ASW31812.1 | MF140406_p65 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 43967 | 44206 |
| ASW31823.1 | MF140406_p76 | hypothetical protein | phrog_6045 | unknown function | unknown function | 1 | 51824 | 52210 |
| ASW31758.1 | MF140406_p11 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 7821 | 8753 |
| ASW31795.1 | MF140406_p48 | hypothetical protein | phrog_6733 | unknown function | unknown function | 1 | 37008 | 37244 |
| ASW31801.1 | MF140406_p54 | hypothetical protein | phrog_478 | site-specific recombination directionality factor RDF | integration and excision | 1 | 39439 | 39828 |
| ASW31833.1 | MF140406_p86 | hypothetical protein | phrog_2074 | unknown function | unknown function | 1 | 56918 | 57175 |
| ASW31781.1 | MF140406_p34 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 29810 | 30037 |
| ASW31815.1 | MF140406_p68 | resolvase | phrog_3055 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 47625 | 48302 |
| ASW31830.1 | MF140406_p83 | hypothetical protein | phrog_2822 | unknown function | unknown function | 1 | 55596 | 56210 |
| ASW31789.1 | MF140406_p42 | hypothetical protein | phrog_8155 | unknown function | unknown function | 1 | 34288 | 34569 |
| ASW31762.1 | MF140406_p15 | head-to-tail connector protein | phrog_123 | tail terminator | connector | 1 | 9965 | 10381 |
| ASW31841.1 | MF140406_p94 | HNH endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 61234 | 61530 |
| ASW31777.1 | MF140406_p30 | holin | phrog_565 | holin | lysis | 1 | 27643 | 28107 |
| ASW31802.1 | MF140406_p55 | hypothetical protein | phrog_3186 | unknown function | unknown function | 1 | 39825 | 40292 |
| ASW31756.1 | MF140406_p9 | hypothetical protein | phrog_1757 | unknown function | unknown function | 1 | 6891 | 7082 |
| ASW31765.1 | MF140406_p17 | tail assembly chaperone | phrog_1326 | tail assembly chaperone | tail | 1 | 11325 | 12196 |
| ASW31751.1 | MF140406_p4 | hypothetical protein | phrog_2622 | unknown function | unknown function | 1 | 980 | 1183 |
| ASW31810.1 | MF140406_p63 | hypothetical protein | phrog_2388 | unknown function | unknown function | 1 | 43145 | 43270 |
| ASW31832.1 | MF140406_p85 | hypothetical protein | phrog_16857 | unknown function | unknown function | 1 | 56778 | 56921 |
| ASW31816.1 | MF140406_p69 | hypothetical protein | phrog_3478 | unknown function | unknown function | 1 | 48310 | 48903 |
| ASW31752.1 | MF140406_p5 | terminase small subunit | phrog_1459 | terminase small subunit | head and packaging | 1 | 1176 | 1403 |
| ASW31753.1 | MF140406_p6 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 1387 | 2811 |
| ASW31818.1 | MF140406_p71 | hypothetical protein | phrog_549 | unknown function | unknown function | 1 | 50015 | 50398 |
| ASW31794.1 | MF140406_p47 | hypothetical protein | phrog_2908 | unknown function | unknown function | 1 | 36588 | 36935 |
| ASW31793.1 | MF140406_p46 | excise | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 36375 | 36584 |
| ASW31770.1 | MF140406_p23 | minor tail protein | phrog_1565 | minor tail protein | tail | 1 | 19917 | 20999 |
| ASW31791.1 | MF140406_p44 | immunity repressor | phrog_1746 | transcriptional repressor | transcription regulation | -1 | 35545 | 35904 |
| ASW31799.1 | MF140406_p52 | WhiB family transcription factor | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 38444 | 38698 |
| ASW31749.1 | MF140406_p2 | hypothetical protein | phrog_2293 | unknown function | unknown function | 1 | 207 | 419 |
| ASW31838.1 | MF140406_p91 | DNA binding domain protein | phrog_4095 | unknown function | unknown function | 1 | 59564 | 60271 |
| ASW31786.1 | MF140406_p39 | hypothetical protein | phrog_12017 | unknown function | unknown function | -1 | 32135 | 32347 |
| ASW31822.1 | MF140406_p75 | hypothetical protein | phrog_5546 | unknown function | unknown function | 1 | 51481 | 51693 |
| ASW31760.1 | MF140406_p13 | head-to-tail connector protein | phrog_763 | head-tail adaptor | connector | 1 | 9299 | 9697 |
| ASW31748.1 | MF140406_p1 | hypothetical protein | phrog_5391 | unknown function | unknown function | 1 | 70 | 210 |
| ASW31772.1 | MF140406_p25 | minor tail protein | phrog_746 | minor tail protein | tail | 1 | 21319 | 23703 |
| ASW31775.1 | MF140406_p28 | lysin A | phrog_1519 | endolysin | lysis | 1 | 25191 | 26894 |
| ASW31768.1 | MF140406_p21 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 17578 | 19344 |
| ASW31796.1 | MF140406_p49 | membrane protein | phrog_2654 | unknown function | unknown function | 1 | 37244 | 37408 |
| ASW31763.1 | MF140406_p16 | major tail protein | phrog_117 | major tail protein | tail | 1 | 10531 | 11145 |
| ASW31831.1 | MF140406_p84 | hypothetical protein | phrog_2493 | unknown function | unknown function | 1 | 56203 | 56781 |
| ASW31824.1 | MF140406_p77 | HTH DNA binding protein | phrog_2342 | unknown function | unknown function | 1 | 52305 | 53138 |
| ASW31778.1 | MF140406_p31 | hypothetical protein | phrog_3413 | unknown function | unknown function | 1 | 28104 | 28442 |
| ASW31806.1 | MF140406_p59 | exonuclease | phrog_1674 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 41432 | 42301 |
| ASW31776.1 | MF140406_p29 | lysin B | phrog_102 | endolysin | lysis | 1 | 26891 | 27631 |
| ASW31834.1 | MF140406_p87 | hypothetical protein | phrog_2433 | unknown function | unknown function | 1 | 57376 | 58065 |
| ASW31814.1 | MF140406_p67 | DNA primase/polymerase | phrog_2478 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 44581 | 47205 |
| ASW31761.1 | MF140406_p14 | head-to-tail connector protein | phrog_387 | neck protein | connector | 1 | 9687 | 9968 |
| ASW31773.1 | MF140406_p26 | hypothetical protein | phrog_416 | minor tail protein | tail | 1 | 23700 | 24704 |
| ASW31750.1 | MF140406_p3 | hypothetical protein | phrog_2074 | unknown function | unknown function | 1 | 416 | 673 |
| ASW31788.1 | MF140406_p41 | integrase | phrog_1 | integrase | integration and excision | 1 | 33018 | 34286 |
| ASW31798.1 | MF140406_p51 | HTH DNA binding protein | phrog_2286 | unknown function | unknown function | 1 | 37659 | 38447 |
| ASW31797.1 | MF140406_p50 | hypothetical protein | phrog_3903 | unknown function | unknown function | 1 | 37405 | 37662 |
| ASW31807.1 | MF140406_p60 | hypothetical protein | phrog_3492 | unknown function | unknown function | 1 | 42298 | 42603 |
| ASW31805.1 | MF140406_p58 | hypothetical protein | phrog_2870 | unknown function | unknown function | 1 | 41139 | 41435 |
| ASW31769.1 | MF140406_p22 | minor tail protein | phrog_1697 | minor tail protein | tail | 1 | 19344 | 19838 |
| ASW31835.1 | MF140406_p88 | hypothetical protein | phrog_30522 | unknown function | unknown function | 1 | 58184 | 58864 |
| ASW31828.1 | MF140406_p81 | hypothetical protein | phrog_19138 | unknown function | unknown function | 1 | 54010 | 54303 |
| ASW31809.1 | MF140406_p62 | hypothetical protein | phrog_1581 | unknown function | unknown function | 1 | 42936 | 43148 |
| ASW31820.1 | MF140406_p73 | hypothetical protein | phrog_21827 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 50701 | 51027 |
| ASW31826.1 | MF140406_p79 | hypothetical protein | phrog_5288 | unknown function | unknown function | 1 | 53530 | 53793 |
| ASW31759.1 | MF140406_p12 | head-to-tail connector protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 8913 | 9299 |
| ASW31829.1 | MF140406_p82 | RNA ligase | phrog_1075 | tRNA splicing ligase | DNA, RNA and nucleotide metabolism | 1 | 54404 | 55594 |
| ASW31780.1 | MF140406_p33 | endonuclease | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 28677 | 29810 |
| ASW31839.1 | MF140406_p92 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 60654 | 60968 |
| ASW31783.1 | MF140406_p36 | hypothetical protein | phrog_4112 | unknown function | unknown function | 1 | 30641 | 30931 |
| ASW31804.1 | MF140406_p57 | DNA polymerase III subunit | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 40588 | 41142 |
| ASW31840.1 | MF140406_p93 | hypothetical protein | phrog_4561 | unknown function | unknown function | 1 | 60983 | 61234 |
| ASW31754.1 | MF140406_p7 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2823 | 4376 |