| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF140411 |
Definition |
Mycobacterium phage Findley, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Timquatrovirus; unclassified Timquatrovirus. |
DB of origin |
NUCCORE |
Length |
58150 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
94 |
%GC |
68.33 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ASR86748.1 | MF140411_p8 | scaffolding protein | phrog_1793 | head scaffolding protein | head and packaging | 1 | 5349 | 5891 |
| ASR86812.1 | MF140411_p72 | DNA primase/helicase | phrog_2478 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 46856 | 49405 |
| ASR86810.1 | MF140411_p70 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 46331 | 46498 |
| ASR86785.1 | MF140411_p45 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 35737 | 36585 |
| ASR86792.1 | MF140411_p52 | hypothetical protein | phrog_1622 | unknown function | unknown function | 1 | 38601 | 38810 |
| ASR86763.1 | MF140411_p23 | minor tail protein | phrog_746 | minor tail protein | tail | 1 | 18661 | 21000 |
| ASR86752.1 | MF140411_p12 | head-to-tail connector protein | phrog_387 | neck protein | connector | 1 | 7693 | 7965 |
| ASR86757.1 | MF140411_p17 | tape measure protein | phrog_971 | endolysin | lysis | 1 | 10116 | 13787 |
| ASR86809.1 | MF140411_p69 | NrdH-like glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 46086 | 46331 |
| ASR86788.1 | MF140411_p48 | excise | phrog_1840 | excisionase | integration and excision | 1 | 37532 | 37789 |
| ASR86819.1 | MF140411_p80 | hypothetical protein | phrog_14958 | unknown function | unknown function | 1 | 52783 | 52920 |
| ASR86775.1 | MF140411_p35 | DNA binding protein | phrog_12831 | transcriptional repressor | transcription regulation | 1 | 28964 | 29299 |
| ASR86824.1 | MF140411_p85 | hypothetical protein | phrog_666 | unknown function | unknown function | 1 | 54892 | 55113 |
| ASR86789.1 | MF140411_p49 | hypothetical protein | phrog_15371 | unknown function | unknown function | 1 | 37794 | 38015 |
| ASR86771.1 | MF140411_p31 | hypothetical protein | phrog_1298 | minor tail protein | tail | 1 | 26489 | 26908 |
| ASR86751.1 | MF140411_p11 | head-to-tail connector protein | phrog_763 | head-tail adaptor | connector | 1 | 7362 | 7712 |
| ASR86821.1 | MF140411_p82 | protease | phrog_1006 | unknown function | unknown function | 1 | 53343 | 53912 |
| ASR86814.1 | MF140411_p75 | hypothetical protein | phrog_17570 | unknown function | unknown function | 1 | 50501 | 50815 |
| ASR86807.1 | MF140411_p67 | hypothetical protein | phrog_2388 | unknown function | unknown function | 1 | 45292 | 45411 |
| ASR86745.1 | MF140411_p5 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2088 | 3593 |
| ASR86832.1 | MF140411_p93 | hypothetical protein | phrog_15574 | unknown function | unknown function | 1 | 57544 | 57714 |
| ASR86799.1 | MF140411_p59 | hypothetical protein | phrog_18188 | unknown function | unknown function | 1 | 41825 | 41941 |
| ASR86787.1 | MF140411_p47 | HTH DNA binding protein | phrog_1702 | transcriptional repressor | transcription regulation | 1 | 37218 | 37535 |
| ASR86784.1 | MF140411_p44 | hypothetical protein | phrog_27584 | unknown function | unknown function | 1 | 35436 | 35678 |
| ASR86815.1 | MF140411_p76 | hypothetical protein | phrog_15365 | unknown function | unknown function | 1 | 50812 | 51141 |
| ASR86762.1 | MF140411_p22 | minor tail protein | phrog_1736 | minor tail protein | tail | 1 | 18423 | 18677 |
| ASR86756.1 | MF140411_p15 | tail assembly chaperone | phrog_1326 | tail assembly chaperone | tail | 1 | 9253 | 10115 |
| ASR86761.1 | MF140411_p21 | minor tail protein | phrog_1565 | minor tail protein | tail | 1 | 17342 | 18418 |
| ASR86780.1 | MF140411_p40 | hypothetical protein | phrog_806 | unknown function | unknown function | -1 | 31487 | 32050 |
| ASR86822.1 | MF140411_p83 | HTH DNA binding protein | phrog_2342 | unknown function | unknown function | 1 | 53952 | 54740 |
| ASR86783.1 | MF140411_p43 | integrase | phrog_1 | integrase | integration and excision | 1 | 34310 | 35410 |
| ASR86769.1 | MF140411_p29 | lysin B | phrog_102 | endolysin | lysis | 1 | 24799 | 26001 |
| ASR86793.1 | MF140411_p53 | HTH DNA binding protein | phrog_2286 | unknown function | unknown function | 1 | 38815 | 39555 |
| ASR86828.1 | MF140411_p89 | hypothetical protein | phrog_15374 | unknown function | unknown function | 1 | 56481 | 56810 |
| ASR86796.1 | MF140411_p56 | hypothetical protein | phrog_801 | dATP / dGTP pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 40537 | 41169 |
| ASR86746.1 | MF140411_p6 | capsid maturation protease | phrog_1752 | head maturation protease | head and packaging | 1 | 3574 | 5094 |
| ASR86797.1 | MF140411_p57 | hypothetical protein | phrog_3186 | unknown function | unknown function | 1 | 41162 | 41557 |
| ASR86759.1 | MF140411_p19 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 15016 | 16785 |
| ASR86743.1 | MF140411_p3 | terminase small subunit | phrog_1459 | terminase small subunit | head and packaging | 1 | 426 | 674 |
| ASR86776.1 | MF140411_p36 | HTH DNA binding protein | phrog_2311 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 29430 | 29834 |
| ASR86823.1 | MF140411_p84 | hypothetical protein | phrog_25972 | unknown function | unknown function | 1 | 54737 | 54898 |
| ASR86805.1 | MF140411_p65 | hypothetical protein | phrog_14762 | unknown function | unknown function | 1 | 44711 | 45031 |
| ASR86779.1 | MF140411_p39 | hypothetical protein | phrog_549 | unknown function | unknown function | -1 | 31107 | 31490 |
| ASR86806.1 | MF140411_p66 | hypothetical protein | phrog_5466 | unknown function | unknown function | 1 | 45028 | 45237 |
| ASR86770.1 | MF140411_p30 | holin | phrog_565 | holin | lysis | 1 | 26020 | 26406 |
| ASR86750.1 | MF140411_p10 | head-to-tail connector protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 6976 | 7362 |
| ASR86818.1 | MF140411_p79 | hypothetical protein | phrog_1338 | unknown function | unknown function | 1 | 52491 | 52760 |
| ASR86791.1 | MF140411_p51 | hypothetical protein | phrog_3903 | unknown function | unknown function | 1 | 38306 | 38587 |
| ASR86781.1 | MF140411_p41 | ssDNA binding protein | phrog_4095 | unknown function | unknown function | 1 | 32188 | 32886 |
| ASR86747.1 | MF140411_p7 | hypothetical protein | phrog_1757 | unknown function | unknown function | 1 | 5091 | 5276 |
| ASR86795.1 | MF140411_p55 | hydrolase | phrog_15484 | hydrolase | other | 1 | 39782 | 40540 |
| ASR86834.1 | MF140411_p73 | hypothetical protein | phrog_27140 | unknown function | unknown function | 1 | 49402 | 49866 |
| ASR86830.1 | MF140411_p91 | hypothetical protein | phrog_12460 | unknown function | unknown function | 1 | 56984 | 57220 |
| ASR86765.1 | MF140411_p25 | minor tail protein | phrog_416 | minor tail protein | tail | 1 | 21282 | 22307 |
| ASR86803.1 | MF140411_p63 | hypothetical protein | phrog_15653 | unknown function | unknown function | 1 | 44229 | 44405 |
| ASR86794.1 | MF140411_p54 | WhiB family transcription factor | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 39552 | 39785 |
| ASR86829.1 | MF140411_p90 | hypothetical protein | phrog_2057 | unknown function | unknown function | 1 | 56807 | 56974 |
| ASR86758.1 | MF140411_p18 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 13892 | 15019 |
| ASR86831.1 | MF140411_p92 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 57233 | 57529 |
| ASR86744.1 | MF140411_p4 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 652 | 2076 |
| ASR86801.1 | MF140411_p61 | hydrolase | phrog_789 | esterase/lipase | other | 1 | 42554 | 43378 |
| ASR86773.1 | MF140411_p33 | hypothetical protein | phrog_1738 | unknown function | unknown function | 1 | 27386 | 27631 |
| ASR86800.1 | MF140411_p60 | DNA polymerase III subunit | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 42024 | 42557 |
| ASR86813.1 | MF140411_p74 | resolvase | phrog_3055 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 49869 | 50504 |
| ASR86767.1 | MF140411_p27 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 22704 | 23072 |
| ASR86760.1 | MF140411_p20 | minor tail protein | phrog_1697 | minor tail protein | tail | 1 | 16785 | 17249 |
| ASR86741.1 | MF140411_p1 | hypothetical protein | phrog_5391 | unknown function | unknown function | 1 | 88 | 222 |
| ASR86826.1 | MF140411_p87 | hypothetical protein | phrog_26442 | unknown function | unknown function | 1 | 55732 | 55971 |
| ASR86820.1 | MF140411_p81 | hypothetical protein | phrog_5546 | unknown function | unknown function | 1 | 52978 | 53289 |
| ASR86825.1 | MF140411_p86 | hypothetical protein | phrog_7638 | unknown function | unknown function | 1 | 55247 | 55735 |
| ASR86802.1 | MF140411_p62 | exonuclease | phrog_1674 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 43375 | 44232 |
| ASR86790.1 | MF140411_p50 | hypothetical protein | phrog_2654 | unknown function | unknown function | 1 | 38091 | 38309 |
| ASR86833.1 | MF140411_p94 | HNH endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 57711 | 57989 |
| ASR86816.1 | MF140411_p77 | DNA binding protein | phrog_908 | unknown function | unknown function | 1 | 51134 | 52036 |
| ASR86777.1 | MF140411_p37 | hypothetical protein | phrog_14992 | unknown function | unknown function | 1 | 29842 | 30216 |
| ASR86742.1 | MF140411_p2 | hypothetical protein | phrog_2622 | unknown function | unknown function | 1 | 224 | 436 |
| ASR86768.1 | MF140411_p28 | lysin A | phrog_1519 | endolysin | lysis | 1 | 23102 | 24793 |
| ASR86804.1 | MF140411_p64 | hypothetical protein | phrog_353 | toxin | moron, auxiliary metabolic gene and host takeover | 1 | 44402 | 44620 |
| ASR86774.1 | MF140411_p34 | exonuclease | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 27622 | 28806 |
| ASR86772.1 | MF140411_p32 | hypothetical protein | phrog_726 | unknown function | unknown function | 1 | 26898 | 27389 |
| ASR86808.1 | MF140411_p68 | hypothetical protein | phrog_1911 | unknown function | unknown function | 1 | 45480 | 45998 |
| ASR86764.1 | MF140411_p24 | minor tail protein | phrog_3901 | unknown function | unknown function | 1 | 21001 | 21282 |
| ASR86798.1 | MF140411_p58 | hypothetical protein | phrog_1956 | unknown function | unknown function | 1 | 41550 | 41828 |
| ASR86749.1 | MF140411_p9 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 5947 | 6864 |
| ASR86778.1 | MF140411_p38 | hypothetical protein | phrog_2433 | unknown function | unknown function | 1 | 30335 | 31039 |
| ASR86755.1 | MF140411_p16 | tail assembly chaperone | phrog_1861 | unknown function | unknown function | 1 | 9253 | 9702 |
| ASR86827.1 | MF140411_p88 | hypothetical protein | phrog_6135 | unknown function | unknown function | 1 | 56094 | 56357 |
| ASR86782.1 | MF140411_p42 | queuine tRNA-ribosyltransferase | phrog_1279 | queuine tRNA-ribosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 33008 | 33853 |
| ASR86786.1 | MF140411_p46 | immunity repressor | phrog_1746 | transcriptional repressor | transcription regulation | -1 | 36673 | 37044 |
| ASR86753.1 | MF140411_p13 | head-to-tail connector protein | phrog_123 | tail terminator | connector | 1 | 7962 | 8381 |
| ASR86754.1 | MF140411_p14 | major tail protein | phrog_117 | major tail protein | tail | 1 | 8532 | 9146 |
| ASR86766.1 | MF140411_p26 | hypothetical protein | phrog_2269 | unknown function | unknown function | 1 | 22322 | 22549 |
| ASR86817.1 | MF140411_p78 | hypothetical protein | phrog_6045 | unknown function | unknown function | 1 | 52105 | 52494 |
| ASR86811.1 | MF140411_p71 | HNH endonuclease | phrog_1571 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 46495 | 46839 |