| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF140416 |
Definition |
Mycobacterium phage LastHope, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Timquatrovirus; unclassified Timquatrovirus. |
DB of origin |
NUCCORE |
Length |
60934 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
102 |
%GC |
66.87 |
Number of singletons |
7 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ASR87264.1 | MF140416_p96 | HTH DNA binding protein | phrog_5243 | unknown function | unknown function | 1 | 58514 | 58711 |
| ASR87270.1 | MF140416_p102 | HNH endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 60575 | 60865 |
| ASR87179.1 | MF140416_p9 | capsid maturation protease | phrog_1752 | head maturation protease | head and packaging | 1 | 4563 | 6086 |
| ASR87238.1 | MF140416_p69 | hypothetical protein | phrog_1911 | unknown function | unknown function | 1 | 42442 | 42954 |
| ASR87230.1 | MF140416_p61 | hypothetical protein | phrog_2870 | unknown function | unknown function | 1 | 39964 | 40290 |
| ASR87235.1 | MF140416_p66 | hypothetical protein | phrog_5466 | unknown function | unknown function | 1 | 41744 | 42028 |
| ASR87171.1 | MF140416_p1 | hypothetical protein | phrog_4624 | unknown function | unknown function | 1 | 71 | 271 |
| ASR87199.1 | MF140416_p30 | lysin B | phrog_102 | endolysin | lysis | 1 | 25598 | 26452 |
| ASR87204.1 | MF140416_p35 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28738 | 28869 |
| ASR87214.1 | MF140416_p45 | immunity repressor | phrog_1746 | transcriptional repressor | transcription regulation | -1 | 34047 | 34433 |
| ASR87208.1 | MF140416_p39 | hypothetical protein | phrog_4095 | unknown function | unknown function | 1 | 30142 | 30828 |
| ASR87234.1 | MF140416_p65 | hypothetical protein | phrog_8427 | unknown function | unknown function | 1 | 41540 | 41734 |
| ASR87267.1 | MF140416_p99 | hypothetical protein | phrog_16962 | unknown function | unknown function | 1 | 59197 | 59616 |
| ASR87255.1 | MF140416_p87 | hypothetical protein | phrog_5794 | unknown function | unknown function | 1 | 53488 | 53766 |
| ASR87260.1 | MF140416_p92 | hypothetical protein | phrog_2822 | unknown function | unknown function | 1 | 56273 | 56836 |
| ASR87221.1 | MF140416_p52 | hypothetical protein | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 36640 | 36891 |
| ASR87256.1 | MF140416_p88 | hypothetical protein | phrog_5288 | unknown function | unknown function | 1 | 53772 | 54131 |
| ASR87177.1 | MF140416_p7 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 1617 | 3041 |
| ASR87187.1 | MF140416_p17 | major tail protein | phrog_117 | major tail protein | tail | 1 | 9529 | 10143 |
| ASR87196.1 | MF140416_p27 | minor tail protein | phrog_416 | minor tail protein | tail | 1 | 22491 | 23498 |
| ASR87241.1 | MF140416_p72 | DNA primase | phrog_2478 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 43716 | 46319 |
| ASR87216.1 | MF140416_p47 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34978 | 35217 |
| ASR87237.1 | MF140416_p68 | hypothetical protein | phrog_2388 | unknown function | unknown function | 1 | 42234 | 42359 |
| ASR87184.1 | MF140416_p14 | head-to-tail connector protein | phrog_763 | head-tail adaptor | connector | 1 | 8383 | 8742 |
| ASR87269.1 | MF140416_p101 | hypothetical protein | singleton | unknown function | unknown function | 1 | 60395 | 60571 |
| ASR87175.1 | MF140416_p5 | hypothetical protein | phrog_2622 | unknown function | unknown function | 1 | 1192 | 1395 |
| ASR87174.1 | MF140416_p4 | hypothetical protein | phrog_2293 | unknown function | unknown function | 1 | 698 | 925 |
| ASR87268.1 | MF140416_p100 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 60006 | 60314 |
| ASR87202.1 | MF140416_p33 | hypothetical protein | phrog_1738 | unknown function | unknown function | 1 | 27271 | 27543 |
| ASR87247.1 | MF140416_p79 | hypothetical protein | phrog_4269 | unknown function | unknown function | 1 | 49572 | 49805 |
| ASR87206.1 | MF140416_p37 | hypothetical protein | phrog_2311 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 29285 | 29716 |
| ASR87231.1 | MF140416_p62 | hypothetical protein | phrog_1498 | unknown function | unknown function | 1 | 40287 | 40457 |
| ASR87266.1 | MF140416_p98 | hypothetical protein | singleton | unknown function | unknown function | 1 | 59040 | 59168 |
| ASR87229.1 | MF140416_p60 | hypothetical protein | phrog_2596 | unknown function | unknown function | 1 | 39701 | 39967 |
| ASR87188.1 | MF140416_p18 | tail assembly chaperone | phrog_1326 | tail assembly chaperone | tail | 1 | 10261 | 11090 |
| ASR87245.1 | MF140416_p77 | hypothetical protein | phrog_6689 | unknown function | unknown function | 1 | 48175 | 48378 |
| ASR87272.1 | MF140416_p73 | hypothetical protein | phrog_7662 | unknown function | unknown function | 1 | 46319 | 46675 |
| ASR87212.1 | MF140416_p43 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32793 | 32939 |
| ASR87176.1 | MF140416_p6 | terminase small subunit | phrog_1459 | terminase small subunit | head and packaging | 1 | 1385 | 1633 |
| ASR87210.1 | MF140416_p41 | hypothetical protein | singleton | unknown function | unknown function | 1 | 31147 | 31269 |
| ASR87232.1 | MF140416_p63 | exonuclease | phrog_1674 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 40454 | 41341 |
| ASR87243.1 | MF140416_p75 | hypothetical protein | phrog_20209 | unknown function | unknown function | 1 | 47419 | 47724 |
| ASR87252.1 | MF140416_p84 | hypothetical protein | phrog_5776 | unknown function | unknown function | 1 | 51985 | 52125 |
| ASR87189.1 | MF140416_p20 | tape measure protein | phrog_971 | endolysin | lysis | 1 | 11090 | 15217 |
| ASR87183.1 | MF140416_p13 | head-to-tail connector protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 8004 | 8381 |
| ASR87194.1 | MF140416_p25 | minor tail protein | phrog_1736 | minor tail protein | tail | 1 | 19866 | 20174 |
| ASR87207.1 | MF140416_p38 | hypothetical protein | phrog_4112 | unknown function | unknown function | 1 | 29713 | 30066 |
| ASR87209.1 | MF140416_p40 | hypothetical protein | phrog_658 | unknown function | unknown function | -1 | 30891 | 31193 |
| ASR87200.1 | MF140416_p31 | holin | phrog_565 | holin | lysis | 1 | 26463 | 26915 |
| ASR87246.1 | MF140416_p78 | peptidase | phrog_908 | unknown function | unknown function | 1 | 48375 | 49559 |
| ASR87251.1 | MF140416_p83 | hypothetical protein | phrog_12426 | unknown function | unknown function | 1 | 51659 | 51889 |
| ASR87228.1 | MF140416_p59 | DNA polymerase III subunit | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 39135 | 39701 |
| ASR87257.1 | MF140416_p89 | hypothetical protein | phrog_415 | polynucleotide kinase | other | 1 | 54128 | 54580 |
| ASR87211.1 | MF140416_p42 | integrase | phrog_95 | integrase | integration and excision | 1 | 31352 | 32743 |
| ASR87195.1 | MF140416_p26 | minor tail protein | phrog_746 | minor tail protein | tail | 1 | 20175 | 22487 |
| ASR87191.1 | MF140416_p22 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 16451 | 18217 |
| ASR87219.1 | MF140416_p50 | hypothetical protein | phrog_3903 | unknown function | unknown function | 1 | 35631 | 35843 |
| ASR87198.1 | MF140416_p29 | lysin A | phrog_1519 | endolysin | lysis | 1 | 23955 | 25601 |
| ASR87253.1 | MF140416_p85 | hypothetical protein | phrog_2342 | unknown function | unknown function | 1 | 52122 | 53018 |
| ASR87185.1 | MF140416_p15 | head-to-tail connector protein | phrog_387 | neck protein | connector | 1 | 8723 | 9013 |
| ASR87205.1 | MF140416_p36 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 28857 | 29096 |
| ASR87201.1 | MF140416_p32 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 26912 | 27274 |
| ASR87190.1 | MF140416_p21 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 15314 | 16450 |
| ASR87193.1 | MF140416_p24 | minor tail protein | phrog_1565 | minor tail protein | tail | 1 | 18777 | 19859 |
| ASR87227.1 | MF140416_p58 | hypothetical protein | phrog_4832 | unknown function | unknown function | 1 | 38927 | 39124 |
| ASR87236.1 | MF140416_p67 | hypothetical protein | phrog_1581 | unknown function | unknown function | 1 | 42025 | 42237 |
| ASR87254.1 | MF140416_p86 | hypothetical protein | phrog_3868 | unknown function | unknown function | 1 | 53015 | 53491 |
| ASR87182.1 | MF140416_p12 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 6959 | 7888 |
| ASR87242.1 | MF140416_p74 | resolvase | phrog_3055 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 46731 | 47426 |
| ASR87222.1 | MF140416_p53 | hypothetical protein | phrog_2781 | unknown function | unknown function | 1 | 36888 | 37739 |
| ASR87240.1 | MF140416_p71 | hypothetical protein | phrog_1571 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 43303 | 43674 |
| ASR87226.1 | MF140416_p57 | hypothetical protein | phrog_1956 | unknown function | unknown function | 1 | 38580 | 38930 |
| ASR87225.1 | MF140416_p56 | hypothetical protein | phrog_7933 | unknown function | unknown function | 1 | 38346 | 38567 |
| ASR87215.1 | MF140416_p46 | hypothetical protein | phrog_1702 | transcriptional repressor | transcription regulation | 1 | 34715 | 34948 |
| ASR87173.1 | MF140416_p3 | hypothetical protein | phrog_2074 | unknown function | unknown function | 1 | 447 | 701 |
| ASR87172.1 | MF140416_p2 | hypothetical protein | phrog_5284 | unknown function | unknown function | 1 | 268 | 450 |
| ASR87233.1 | MF140416_p64 | hypothetical protein | phrog_3492 | unknown function | unknown function | 1 | 41338 | 41538 |
| ASR87218.1 | MF140416_p49 | hypothetical protein | phrog_2654 | unknown function | unknown function | 1 | 35467 | 35634 |
| ASR87213.1 | MF140416_p44 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 33040 | 33885 |
| ASR87262.1 | MF140416_p94 | HTH DNA binding protein | phrog_3665 | unknown function | unknown function | 1 | 57401 | 57562 |
| ASR87220.1 | MF140416_p51 | WhiB family transcription factor | phrog_2286 | unknown function | unknown function | 1 | 35843 | 36631 |
| ASR87178.1 | MF140416_p8 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 3053 | 4603 |
| ASR87197.1 | MF140416_p28 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 23580 | 23936 |
| ASR87203.1 | MF140416_p34 | exonuclease | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 27530 | 28738 |
| ASR87249.1 | MF140416_p81 | HTH DNA binding protein | phrog_9390 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 50083 | 51000 |
| ASR87239.1 | MF140416_p70 | hypothetical protein | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 43062 | 43310 |
| ASR87217.1 | MF140416_p48 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35176 | 35289 |
| ASR87271.1 | MF140416_p19 | tail assembly chaperone | phrog_1861 | unknown function | unknown function | 1 | 10261 | 10674 |
| ASR87259.1 | MF140416_p91 | hypothetical protein | phrog_3167 | unknown function | unknown function | 1 | 55896 | 56273 |
| ASR87181.1 | MF140416_p11 | scaffolding protein | phrog_1793 | head scaffolding protein | head and packaging | 1 | 6334 | 6882 |
| ASR87244.1 | MF140416_p76 | hypothetical protein | phrog_3478 | unknown function | unknown function | 1 | 47717 | 48178 |
| ASR87250.1 | MF140416_p82 | protease | phrog_1006 | unknown function | unknown function | 1 | 51070 | 51531 |
| ASR87265.1 | MF140416_p97 | hypothetical protein | phrog_353 | toxin | moron, auxiliary metabolic gene and host takeover | 1 | 58834 | 59049 |
| ASR87180.1 | MF140416_p10 | hypothetical protein | phrog_1757 | unknown function | unknown function | 1 | 6083 | 6268 |
| ASR87248.1 | MF140416_p80 | hypothetical protein | phrog_1338 | unknown function | unknown function | 1 | 49802 | 50086 |
| ASR87261.1 | MF140416_p93 | hypothetical protein | phrog_2493 | unknown function | unknown function | 1 | 56829 | 57404 |
| ASR87224.1 | MF140416_p55 | hypothetical protein | phrog_478 | site-specific recombination directionality factor RDF | integration and excision | 1 | 37963 | 38349 |
| ASR87186.1 | MF140416_p16 | head-to-tail connector protein | phrog_123 | tail terminator | connector | 1 | 9022 | 9435 |
| ASR87192.1 | MF140416_p23 | minor tail protein | phrog_1697 | minor tail protein | tail | 1 | 18217 | 18693 |
| ASR87258.1 | MF140416_p90 | RNA ligase | phrog_1075 | tRNA splicing ligase | DNA, RNA and nucleotide metabolism | 1 | 54702 | 55892 |
| ASR87223.1 | MF140416_p54 | hypothetical protein | phrog_542 | unknown function | unknown function | 1 | 37751 | 37921 |
| ASR87263.1 | MF140416_p95 | hypothetical protein | phrog_5812 | unknown function | unknown function | 1 | 57779 | 58408 |