Genomic map of Mycobacterium phage LastHope (MF140416)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MF140416
Definition
Mycobacterium phage LastHope, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Timquatrovirus; unclassified Timquatrovirus.
DB of origin
NUCCORE
Length
60934
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
102
%GC
66.87
Number of singletons
7
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ASR87264.1 MF140416_p96 HTH DNA binding protein phrog_5243 unknown function unknown function 1 58514 58711
ASR87270.1 MF140416_p102 HNH endonuclease phrog_338 HNH endonuclease DNA, RNA and nucleotide metabolism 1 60575 60865
ASR87179.1 MF140416_p9 capsid maturation protease phrog_1752 head maturation protease head and packaging 1 4563 6086
ASR87238.1 MF140416_p69 hypothetical protein phrog_1911 unknown function unknown function 1 42442 42954
ASR87230.1 MF140416_p61 hypothetical protein phrog_2870 unknown function unknown function 1 39964 40290
ASR87235.1 MF140416_p66 hypothetical protein phrog_5466 unknown function unknown function 1 41744 42028
ASR87171.1 MF140416_p1 hypothetical protein phrog_4624 unknown function unknown function 1 71 271
ASR87199.1 MF140416_p30 lysin B phrog_102 endolysin lysis 1 25598 26452
ASR87204.1 MF140416_p35 hypothetical protein singleton unknown function unknown function 1 28738 28869
ASR87214.1 MF140416_p45 immunity repressor phrog_1746 transcriptional repressor transcription regulation -1 34047 34433
ASR87208.1 MF140416_p39 hypothetical protein phrog_4095 unknown function unknown function 1 30142 30828
ASR87234.1 MF140416_p65 hypothetical protein phrog_8427 unknown function unknown function 1 41540 41734
ASR87267.1 MF140416_p99 hypothetical protein phrog_16962 unknown function unknown function 1 59197 59616
ASR87255.1 MF140416_p87 hypothetical protein phrog_5794 unknown function unknown function 1 53488 53766
ASR87260.1 MF140416_p92 hypothetical protein phrog_2822 unknown function unknown function 1 56273 56836
ASR87221.1 MF140416_p52 hypothetical protein phrog_472 WhiB transcriptional factor transcription regulation 1 36640 36891
ASR87256.1 MF140416_p88 hypothetical protein phrog_5288 unknown function unknown function 1 53772 54131
ASR87177.1 MF140416_p7 terminase large subunit phrog_2 terminase large subunit head and packaging 1 1617 3041
ASR87187.1 MF140416_p17 major tail protein phrog_117 major tail protein tail 1 9529 10143
ASR87196.1 MF140416_p27 minor tail protein phrog_416 minor tail protein tail 1 22491 23498
ASR87241.1 MF140416_p72 DNA primase phrog_2478 DNA polymerase/primase DNA, RNA and nucleotide metabolism 1 43716 46319
ASR87216.1 MF140416_p47 hypothetical protein singleton unknown function unknown function -1 34978 35217
ASR87237.1 MF140416_p68 hypothetical protein phrog_2388 unknown function unknown function 1 42234 42359
ASR87184.1 MF140416_p14 head-to-tail connector protein phrog_763 head-tail adaptor connector 1 8383 8742
ASR87269.1 MF140416_p101 hypothetical protein singleton unknown function unknown function 1 60395 60571
ASR87175.1 MF140416_p5 hypothetical protein phrog_2622 unknown function unknown function 1 1192 1395
ASR87174.1 MF140416_p4 hypothetical protein phrog_2293 unknown function unknown function 1 698 925
ASR87268.1 MF140416_p100 hypothetical protein phrog_747 unknown function unknown function 1 60006 60314
ASR87202.1 MF140416_p33 hypothetical protein phrog_1738 unknown function unknown function 1 27271 27543
ASR87247.1 MF140416_p79 hypothetical protein phrog_4269 unknown function unknown function 1 49572 49805
ASR87206.1 MF140416_p37 hypothetical protein phrog_2311 HTH DNA binding protein DNA, RNA and nucleotide metabolism 1 29285 29716
ASR87231.1 MF140416_p62 hypothetical protein phrog_1498 unknown function unknown function 1 40287 40457
ASR87266.1 MF140416_p98 hypothetical protein singleton unknown function unknown function 1 59040 59168
ASR87229.1 MF140416_p60 hypothetical protein phrog_2596 unknown function unknown function 1 39701 39967
ASR87188.1 MF140416_p18 tail assembly chaperone phrog_1326 tail assembly chaperone tail 1 10261 11090
ASR87245.1 MF140416_p77 hypothetical protein phrog_6689 unknown function unknown function 1 48175 48378
ASR87272.1 MF140416_p73 hypothetical protein phrog_7662 unknown function unknown function 1 46319 46675
ASR87212.1 MF140416_p43 hypothetical protein singleton unknown function unknown function 1 32793 32939
ASR87176.1 MF140416_p6 terminase small subunit phrog_1459 terminase small subunit head and packaging 1 1385 1633
ASR87210.1 MF140416_p41 hypothetical protein singleton unknown function unknown function 1 31147 31269
ASR87232.1 MF140416_p63 exonuclease phrog_1674 exonuclease DNA, RNA and nucleotide metabolism 1 40454 41341
ASR87243.1 MF140416_p75 hypothetical protein phrog_20209 unknown function unknown function 1 47419 47724
ASR87252.1 MF140416_p84 hypothetical protein phrog_5776 unknown function unknown function 1 51985 52125
ASR87189.1 MF140416_p20 tape measure protein phrog_971 endolysin lysis 1 11090 15217
ASR87183.1 MF140416_p13 head-to-tail connector protein phrog_137 head-tail adaptor Ad1 connector 1 8004 8381
ASR87194.1 MF140416_p25 minor tail protein phrog_1736 minor tail protein tail 1 19866 20174
ASR87207.1 MF140416_p38 hypothetical protein phrog_4112 unknown function unknown function 1 29713 30066
ASR87209.1 MF140416_p40 hypothetical protein phrog_658 unknown function unknown function -1 30891 31193
ASR87200.1 MF140416_p31 holin phrog_565 holin lysis 1 26463 26915
ASR87246.1 MF140416_p78 peptidase phrog_908 unknown function unknown function 1 48375 49559
ASR87251.1 MF140416_p83 hypothetical protein phrog_12426 unknown function unknown function 1 51659 51889
ASR87228.1 MF140416_p59 DNA polymerase III subunit phrog_192 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 39135 39701
ASR87257.1 MF140416_p89 hypothetical protein phrog_415 polynucleotide kinase other 1 54128 54580
ASR87211.1 MF140416_p42 integrase phrog_95 integrase integration and excision 1 31352 32743
ASR87195.1 MF140416_p26 minor tail protein phrog_746 minor tail protein tail 1 20175 22487
ASR87191.1 MF140416_p22 minor tail protein phrog_110 minor tail protein tail 1 16451 18217
ASR87219.1 MF140416_p50 hypothetical protein phrog_3903 unknown function unknown function 1 35631 35843
ASR87198.1 MF140416_p29 lysin A phrog_1519 endolysin lysis 1 23955 25601
ASR87253.1 MF140416_p85 hypothetical protein phrog_2342 unknown function unknown function 1 52122 53018
ASR87185.1 MF140416_p15 head-to-tail connector protein phrog_387 neck protein connector 1 8723 9013
ASR87205.1 MF140416_p36 hypothetical protein phrog_1042 unknown function unknown function 1 28857 29096
ASR87201.1 MF140416_p32 hypothetical protein phrog_404 minor tail protein tail 1 26912 27274
ASR87190.1 MF140416_p21 minor tail protein phrog_106 minor tail protein tail 1 15314 16450
ASR87193.1 MF140416_p24 minor tail protein phrog_1565 minor tail protein tail 1 18777 19859
ASR87227.1 MF140416_p58 hypothetical protein phrog_4832 unknown function unknown function 1 38927 39124
ASR87236.1 MF140416_p67 hypothetical protein phrog_1581 unknown function unknown function 1 42025 42237
ASR87254.1 MF140416_p86 hypothetical protein phrog_3868 unknown function unknown function 1 53015 53491
ASR87182.1 MF140416_p12 major capsid protein phrog_10 major head protein head and packaging 1 6959 7888
ASR87242.1 MF140416_p74 resolvase phrog_3055 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 46731 47426
ASR87222.1 MF140416_p53 hypothetical protein phrog_2781 unknown function unknown function 1 36888 37739
ASR87240.1 MF140416_p71 hypothetical protein phrog_1571 HNH endonuclease DNA, RNA and nucleotide metabolism 1 43303 43674
ASR87226.1 MF140416_p57 hypothetical protein phrog_1956 unknown function unknown function 1 38580 38930
ASR87225.1 MF140416_p56 hypothetical protein phrog_7933 unknown function unknown function 1 38346 38567
ASR87215.1 MF140416_p46 hypothetical protein phrog_1702 transcriptional repressor transcription regulation 1 34715 34948
ASR87173.1 MF140416_p3 hypothetical protein phrog_2074 unknown function unknown function 1 447 701
ASR87172.1 MF140416_p2 hypothetical protein phrog_5284 unknown function unknown function 1 268 450
ASR87233.1 MF140416_p64 hypothetical protein phrog_3492 unknown function unknown function 1 41338 41538
ASR87218.1 MF140416_p49 hypothetical protein phrog_2654 unknown function unknown function 1 35467 35634
ASR87213.1 MF140416_p44 hypothetical protein phrog_950 unknown function unknown function -1 33040 33885
ASR87262.1 MF140416_p94 HTH DNA binding protein phrog_3665 unknown function unknown function 1 57401 57562
ASR87220.1 MF140416_p51 WhiB family transcription factor phrog_2286 unknown function unknown function 1 35843 36631
ASR87178.1 MF140416_p8 portal protein phrog_104 portal protein head and packaging 1 3053 4603
ASR87197.1 MF140416_p28 hypothetical protein phrog_240 head protein head and packaging 1 23580 23936
ASR87203.1 MF140416_p34 exonuclease phrog_284 exonuclease DNA, RNA and nucleotide metabolism 1 27530 28738
ASR87249.1 MF140416_p81 HTH DNA binding protein phrog_9390 DNA binding protein DNA, RNA and nucleotide metabolism 1 50083 51000
ASR87239.1 MF140416_p70 hypothetical protein phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 43062 43310
ASR87217.1 MF140416_p48 hypothetical protein singleton unknown function unknown function 1 35176 35289
ASR87271.1 MF140416_p19 tail assembly chaperone phrog_1861 unknown function unknown function 1 10261 10674
ASR87259.1 MF140416_p91 hypothetical protein phrog_3167 unknown function unknown function 1 55896 56273
ASR87181.1 MF140416_p11 scaffolding protein phrog_1793 head scaffolding protein head and packaging 1 6334 6882
ASR87244.1 MF140416_p76 hypothetical protein phrog_3478 unknown function unknown function 1 47717 48178
ASR87250.1 MF140416_p82 protease phrog_1006 unknown function unknown function 1 51070 51531
ASR87265.1 MF140416_p97 hypothetical protein phrog_353 toxin moron, auxiliary metabolic gene and host takeover 1 58834 59049
ASR87180.1 MF140416_p10 hypothetical protein phrog_1757 unknown function unknown function 1 6083 6268
ASR87248.1 MF140416_p80 hypothetical protein phrog_1338 unknown function unknown function 1 49802 50086
ASR87261.1 MF140416_p93 hypothetical protein phrog_2493 unknown function unknown function 1 56829 57404
ASR87224.1 MF140416_p55 hypothetical protein phrog_478 site-specific recombination directionality factor RDF integration and excision 1 37963 38349
ASR87186.1 MF140416_p16 head-to-tail connector protein phrog_123 tail terminator connector 1 9022 9435
ASR87192.1 MF140416_p23 minor tail protein phrog_1697 minor tail protein tail 1 18217 18693
ASR87258.1 MF140416_p90 RNA ligase phrog_1075 tRNA splicing ligase DNA, RNA and nucleotide metabolism 1 54702 55892
ASR87223.1 MF140416_p54 hypothetical protein phrog_542 unknown function unknown function 1 37751 37921
ASR87263.1 MF140416_p95 hypothetical protein phrog_5812 unknown function unknown function 1 57779 58408