Genomic map of Arthrobacter phage Link (MF140417)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MF140417
Definition
Arthrobacter phage Link, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Decurrovirus; unclassified Decurrovirus.
DB of origin
NUCCORE
Length
15521
Host Name
Arthrobacter sp.
Host domain
Bacteria
Is prophage?
undef
Number of proteins
26
%GC
60.17
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ASR83583.1 MF140417_p23 HTH DNA binding protein phrog_8540 replication initiation O-like DNA, RNA and nucleotide metabolism 1 14081 14749
ASR83571.1 MF140417_p11 minor tail protein phrog_5 tail completion or Neck1 protein connector 1 6436 6813
ASR83581.1 MF140417_p21 XRE-type helix-turn-helix domain protein phrog_3 transcriptional repressor transcription regulation -1 13469 13741
ASR83569.1 MF140417_p9 hypothetical protein phrog_6768 unknown function unknown function 1 5652 6008
ASR83584.1 MF140417_p24 hypothetical protein phrog_10694 unknown function unknown function 1 14736 14951
ASR83570.1 MF140417_p10 major tail protein phrog_4574 major tail protein tail 1 6014 6436
ASR83580.1 MF140417_p20 HTH DNA binding protein phrog_686 HTH DNA binding protein DNA, RNA and nucleotide metabolism 1 13218 13472
ASR83585.1 MF140417_p25 hypothetical protein phrog_10672 unknown function unknown function 1 14948 15241
ASR83561.1 MF140417_p1 hypothetical protein phrog_9475 unknown function unknown function 1 43 348
ASR83577.1 MF140417_p17 N-acetylmuramoyl-L-alanine amidase phrog_4018 amidase lysis 1 12047 12688
ASR83579.1 MF140417_p19 hypothetical protein phrog_689 holin lysis 1 12884 13150
ASR83573.1 MF140417_p13 tape measure protein phrog_3981 tail length tape measure protein tail 1 7281 9278
ASR83574.1 MF140417_p14 minor tail protein phrog_10760 minor tail protein tail 1 9275 11089
ASR83567.1 MF140417_p7 capsid & capsid maturation protease phrog_2263 major head protein head and packaging 1 3704 5287
ASR83576.1 MF140417_p16 endolysin phrog_6700 endolysin lysis 1 11604 12050
ASR83564.1 MF140417_p4 terminase phrog_9 terminase large subunit head and packaging 1 800 2290
ASR83575.1 MF140417_p15 hypothetical protein phrog_10587 unknown function unknown function 1 11092 11607
ASR83563.1 MF140417_p3 hypothetical protein phrog_10836 unknown function unknown function 1 591 806
ASR83586.1 MF140417_p26 HNH endonuclease phrog_5718 HNH endonuclease DNA, RNA and nucleotide metabolism 1 15228 15494
ASR83562.1 MF140417_p2 hypothetical protein phrog_17346 unknown function unknown function 1 345 560
ASR83582.1 MF140417_p22 MerR-like HTH DNA binding domain protein phrog_66 excisionase and transcriptional regulator integration and excision 1 13851 14084
ASR83578.1 MF140417_p18 holin phrog_9284 holin lysis 1 12694 12903
ASR83568.1 MF140417_p8 head-to-tail-connector protein phrog_5938 head-tail connector protein connector 1 5291 5647
ASR83572.1 MF140417_p12 hypothetical protein phrog_6889 unknown function unknown function 1 6820 7170
ASR83565.1 MF140417_p5 hypothetical protein phrog_7332 unknown function unknown function 1 2292 2495
ASR83566.1 MF140417_p6 portal protein phrog_12 portal protein head and packaging 1 2547 3707