Genomic map of Mycobacterium phage Nicholas (MF140421)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MF140421
Definition
Mycobacterium phage Nicholas, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Bronvirus; unclassified Bronvirus.
DB of origin
NUCCORE
Length
70413
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
112
%GC
59.18
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ASR87355.1 MF140421_p83 RNA ligase phrog_968 RNA ligase DNA, RNA and nucleotide metabolism 1 56135 57433
ASR87336.1 MF140421_p64 hypothetical protein phrog_2693 unknown function unknown function 1 46787 47248
ASR87324.1 MF140421_p52 hypothetical protein phrog_1673 unknown function unknown function 1 40577 40813
ASR87276.1 MF140421_p4 hypothetical protein phrog_17068 unknown function unknown function 1 1041 1190
ASR87358.1 MF140421_p86 hypothetical protein phrog_20980 unknown function unknown function 1 58632 58736
ASR87360.1 MF140421_p88 hypothetical protein phrog_1969 unknown function unknown function 1 58956 59294
ASR87343.1 MF140421_p71 ribose-phosphate pyrophosphokinase phrog_619 ribose-phosphate pyrophosphokinase other 1 49897 50760
ASR87309.1 MF140421_p37 hypothetical protein phrog_950 unknown function unknown function -1 33187 33978
ASR87371.1 MF140421_p99 hypothetical protein phrog_6800 unknown function unknown function 1 62727 62900
ASR87370.1 MF140421_p98 hypothetical protein phrog_14116 unknown function unknown function 1 62477 62734
ASR87338.1 MF140421_p66 DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 47918 49183
ASR87289.1 MF140421_p17 tape measure protein phrog_3547 tail length tape measure protein tail 1 10975 16401
ASR87285.1 MF140421_p13 head-to-tail connector protein phrog_123 tail terminator connector 1 8608 9093
ASR87312.1 MF140421_p40 DNA binding protein phrog_66 excisionase and transcriptional regulator integration and excision 1 34951 35166
ASR87315.1 MF140421_p43 hypothetical protein phrog_5916 unknown function unknown function 1 36476 36838
ASR87367.1 MF140421_p95 hypothetical protein phrog_338 HNH endonuclease DNA, RNA and nucleotide metabolism 1 61732 62151
ASR87317.1 MF140421_p45 hypothetical protein phrog_17914 unknown function unknown function 1 37831 38049
ASR87294.1 MF140421_p22 minor tail protein phrog_416 minor tail protein tail 1 22247 23464
ASR87279.1 MF140421_p7 capsid maturation protease phrog_193 head maturation protease head and packaging 1 4416 5486
ASR87295.1 MF140421_p23 hypothetical protein phrog_240 head protein head and packaging 1 23494 23877
ASR87283.1 MF140421_p11 head-to-tail connector protein phrog_5309 head-tail adaptor connector 1 7844 8182
ASR87306.1 MF140421_p34 DNA binding protein phrog_1223 nucloid associated Lsr2-like DNA, RNA and nucleotide metabolism -1 30484 30921
ASR87290.1 MF140421_p18 minor tail protein phrog_106 minor tail protein tail 1 16490 17380
ASR87292.1 MF140421_p20 minor tail protein phrog_4413 minor tail protein tail 1 19275 19724
ASR87302.1 MF140421_p30 hypothetical protein phrog_726 unknown function unknown function 1 28374 28793
ASR87273.1 MF140421_p1 hypothetical protein phrog_23622 unknown function unknown function 1 84 473
ASR87316.1 MF140421_p44 hypothetical protein phrog_1649 metallo-phosphoesterase other 1 37022 37831
ASR87310.1 MF140421_p38 immunity repressor phrog_1746 transcriptional repressor transcription regulation -1 34133 34516
ASR87337.1 MF140421_p65 hypothetical protein phrog_1882 unknown function unknown function 1 47241 47921
ASR87368.1 MF140421_p96 hypothetical protein phrog_3699 unknown function unknown function 1 62151 62381
ASR87342.1 MF140421_p70 hypothetical protein phrog_6206 unknown function unknown function 1 49766 49915
ASR87305.1 MF140421_p33 nucleotidyltransferase phrog_388 nucleotidyltransferase DNA, RNA and nucleotide metabolism -1 29647 30387
ASR87327.1 MF140421_p55 hypothetical protein phrog_5872 unknown function unknown function 1 42980 43297
ASR87298.1 MF140421_p26 lysin A phrog_317 endolysin lysis 1 24962 26434
ASR87303.1 MF140421_p31 glutaredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 28784 29050
ASR87278.1 MF140421_p6 portal protein phrog_104 portal protein head and packaging 1 2756 4399
ASR87362.1 MF140421_p90 hypothetical protein phrog_1042 unknown function unknown function 1 59838 60107
ASR87286.1 MF140421_p14 major tail protein phrog_476 major tail protein tail 1 9123 10025
ASR87308.1 MF140421_p36 integrase phrog_1 integrase integration and excision 1 31898 33190
ASR87351.1 MF140421_p79 hypothetical protein phrog_1568 DNA binding protein DNA, RNA and nucleotide metabolism 1 54624 55190
ASR87320.1 MF140421_p48 membrane protein phrog_200 lipoprotein other 1 38576 39508
ASR87349.1 MF140421_p77 WhiB family transcription factor phrog_472 WhiB transcriptional factor transcription regulation 1 54067 54390
ASR87296.1 MF140421_p24 hypothetical protein phrog_3856 minor tail protein tail 1 23889 24830
ASR87277.1 MF140421_p5 terminase large subunit phrog_9 terminase large subunit head and packaging 1 1190 2755
ASR87341.1 MF140421_p69 hypothetical protein phrog_18534 unknown function unknown function 1 49615 49773
ASR87281.1 MF140421_p9 major capsid protein phrog_283 major head protein head and packaging 1 6200 7360
ASR87330.1 MF140421_p58 hypothetical protein phrog_7425 unknown function unknown function 1 43590 43781
ASR87326.1 MF140421_p54 hypothetical protein phrog_301 secreted protein other 1 42646 42987
ASR87384.1 MF140421_p112 hypothetical protein phrog_26014 unknown function unknown function -1 69044 69271
ASR87382.1 MF140421_p110 hypothetical protein phrog_3777 unknown function unknown function -1 68053 68433
ASR87365.1 MF140421_p93 hypothetical protein phrog_397 unknown function unknown function 1 61205 61339
ASR87373.1 MF140421_p101 hypothetical protein phrog_19018 unknown function unknown function 1 63397 63570
ASR87357.1 MF140421_p85 hypothetical protein phrog_7495 unknown function unknown function 1 58086 58631
ASR87348.1 MF140421_p76 WhiB family transcription factor phrog_472 WhiB transcriptional factor transcription regulation 1 53801 54070
ASR87340.1 MF140421_p68 hypothetical protein phrog_23047 unknown function unknown function 1 49412 49618
ASR87297.1 MF140421_p25 hypothetical protein phrog_1087 unknown function unknown function 1 24855 24962
ASR87347.1 MF140421_p75 resolvase phrog_34 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 53440 53832
ASR87350.1 MF140421_p78 hypothetical protein phrog_1941 unknown function unknown function 1 54380 54634
ASR87301.1 MF140421_p29 hypothetical protein phrog_5963 holin lysis 1 27907 28371
ASR87335.1 MF140421_p63 hypothetical protein phrog_1389 unknown function unknown function 1 46116 46487
ASR87300.1 MF140421_p28 lysin B phrog_102 endolysin lysis 1 26850 27893
ASR87334.1 MF140421_p62 DNA binding protein phrog_7527 unknown function unknown function 1 45806 46123
ASR87346.1 MF140421_p74 hypothetical protein phrog_6064 unknown function unknown function 1 53257 53439
ASR87353.1 MF140421_p81 hypothetical protein phrog_353 toxin moron, auxiliary metabolic gene and host takeover 1 55591 55809
ASR87328.1 MF140421_p56 hypothetical protein phrog_17581 unknown function unknown function 1 43294 43446
ASR87280.1 MF140421_p8 scaffolding protein phrog_3760 head scaffolding protein head and packaging 1 5542 6141
ASR87354.1 MF140421_p82 hypothetical protein phrog_15155 unknown function unknown function 1 55806 56138
ASR87325.1 MF140421_p53 RNA binding protein phrog_850 RNA-binding protein DNA, RNA and nucleotide metabolism 1 40825 42264
ASR87372.1 MF140421_p100 hypothetical protein phrog_10290 unknown function unknown function 1 62999 63202
ASR87288.1 MF140421_p15 tail assembly chaperone phrog_2624 tail assembly chaperone tail 1 10124 10946
ASR87307.1 MF140421_p35 hypothetical protein phrog_17141 unknown function unknown function -1 31008 31391
ASR87291.1 MF140421_p19 minor tail protein phrog_110 minor tail protein tail 1 17373 19136
ASR87376.1 MF140421_p104 hypothetical protein phrog_6170 unknown function unknown function 1 65127 65513
ASR87333.1 MF140421_p61 ERF family ssDNA binding protein phrog_5917 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 45537 45809
ASR87356.1 MF140421_p84 protease phrog_94 head maturation protease head and packaging 1 57433 58086
ASR87331.1 MF140421_p59 hypothetical protein phrog_466 exonuclease DNA, RNA and nucleotide metabolism 1 44021 44758
ASR87379.1 MF140421_p107 hypothetical protein phrog_32898 unknown function unknown function -1 66721 66855
ASR87383.1 MF140421_p111 hypothetical protein phrog_16092 unknown function unknown function -1 68802 69017
ASR87361.1 MF140421_p89 HNH endonuclease phrog_959 HNH endonuclease DNA, RNA and nucleotide metabolism 1 59344 59751
ASR87282.1 MF140421_p10 head-to-tail connector protein phrog_137 head-tail adaptor Ad1 connector 1 7371 7847
ASR87374.1 MF140421_p102 hypothetical protein phrog_28919 unknown function unknown function 1 63982 64236
ASR87359.1 MF140421_p87 hypothetical protein phrog_2218 unknown function unknown function 1 58733 58963
ASR87313.1 MF140421_p41 hypothetical protein phrog_762 unknown function unknown function 1 35163 35558
ASR87366.1 MF140421_p94 hypothetical protein phrog_6439 unknown function unknown function 1 61339 61581
ASR87363.1 MF140421_p91 hypothetical protein phrog_4472 nucleotide kinase other 1 60085 60426
ASR87311.1 MF140421_p39 hypothetical protein phrog_1702 transcriptional repressor transcription regulation 1 34655 34954
ASR87375.1 MF140421_p103 hypothetical protein phrog_940 nuclease DNA, RNA and nucleotide metabolism 1 64433 65140
ASR87329.1 MF140421_p57 hypothetical protein phrog_5858 unknown function unknown function 1 43424 43600
ASR87319.1 MF140421_p47 hypothetical protein phrog_17191 unknown function unknown function 1 38331 38507
ASR87321.1 MF140421_p49 hypothetical protein phrog_4870 unknown function unknown function 1 39680 40075
ASR87378.1 MF140421_p106 hypothetical protein phrog_4776 unknown function unknown function -1 65966 66592
ASR87318.1 MF140421_p46 hypothetical protein phrog_6017 unknown function unknown function 1 38039 38353
ASR87323.1 MF140421_p51 hypothetical protein phrog_1498 unknown function unknown function 1 40419 40580
ASR87369.1 MF140421_p97 hypothetical protein phrog_6027 unknown function unknown function 1 62374 62493
ASR87364.1 MF140421_p92 DNA polymerase III subunit phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 60423 61205
ASR87287.1 MF140421_p16 tail assembly chaperone phrog_4464 tail assembly chaperone tail 1 10124 10399
ASR87322.1 MF140421_p50 hypothetical protein phrog_2380 unknown function unknown function 1 40072 40317
ASR87380.1 MF140421_p108 hypothetical protein phrog_6230 unknown function unknown function -1 66858 67097
ASR87344.1 MF140421_p72 ribose-phosphate pyrophosphokinase phrog_448 nicotinamide phosphoribosyl transferase other 1 50757 52232
ASR87339.1 MF140421_p67 hypothetical protein phrog_1821 transcriptional regulator WhiB-like transcription regulation 1 49180 49461
ASR87352.1 MF140421_p80 ssDNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 55183 55566
ASR87314.1 MF140421_p42 hypothetical protein phrog_572 unknown function unknown function 1 35730 36053
ASR87332.1 MF140421_p60 ERF family ssDNA binding protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 44770 45537
ASR87284.1 MF140421_p12 head-to-tail connector protein phrog_5775 head-tail connector protein connector 1 8182 8598
ASR87345.1 MF140421_p73 polynucleotide kinase phrog_505 polynucleotide kinase other 1 52319 53257
ASR87304.1 MF140421_p32 hypothetical protein phrog_6558 unknown function unknown function -1 29361 29636
ASR87299.1 MF140421_p27 holin phrog_526 holin lysis 1 26434 26850
ASR87274.1 MF140421_p2 terminase small subunit phrog_1496 terminase small subunit head and packaging 1 481 852
ASR87381.1 MF140421_p109 hypothetical protein phrog_1909 unknown function unknown function -1 67126 67986
ASR87377.1 MF140421_p105 hypothetical protein phrog_20848 unknown function unknown function -1 65720 65965
ASR87275.1 MF140421_p3 hypothetical protein phrog_18572 unknown function unknown function 1 860 1048
ASR87293.1 MF140421_p21 minor tail protein phrog_746 minor tail protein tail 1 19724 22237