| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF140421 |
Definition |
Mycobacterium phage Nicholas, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Bronvirus; unclassified Bronvirus. |
DB of origin |
NUCCORE |
Length |
70413 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
112 |
%GC |
59.18 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ASR87355.1 | MF140421_p83 | RNA ligase | phrog_968 | RNA ligase | DNA, RNA and nucleotide metabolism | 1 | 56135 | 57433 |
| ASR87336.1 | MF140421_p64 | hypothetical protein | phrog_2693 | unknown function | unknown function | 1 | 46787 | 47248 |
| ASR87324.1 | MF140421_p52 | hypothetical protein | phrog_1673 | unknown function | unknown function | 1 | 40577 | 40813 |
| ASR87276.1 | MF140421_p4 | hypothetical protein | phrog_17068 | unknown function | unknown function | 1 | 1041 | 1190 |
| ASR87358.1 | MF140421_p86 | hypothetical protein | phrog_20980 | unknown function | unknown function | 1 | 58632 | 58736 |
| ASR87360.1 | MF140421_p88 | hypothetical protein | phrog_1969 | unknown function | unknown function | 1 | 58956 | 59294 |
| ASR87343.1 | MF140421_p71 | ribose-phosphate pyrophosphokinase | phrog_619 | ribose-phosphate pyrophosphokinase | other | 1 | 49897 | 50760 |
| ASR87309.1 | MF140421_p37 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 33187 | 33978 |
| ASR87371.1 | MF140421_p99 | hypothetical protein | phrog_6800 | unknown function | unknown function | 1 | 62727 | 62900 |
| ASR87370.1 | MF140421_p98 | hypothetical protein | phrog_14116 | unknown function | unknown function | 1 | 62477 | 62734 |
| ASR87338.1 | MF140421_p66 | DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 47918 | 49183 |
| ASR87289.1 | MF140421_p17 | tape measure protein | phrog_3547 | tail length tape measure protein | tail | 1 | 10975 | 16401 |
| ASR87285.1 | MF140421_p13 | head-to-tail connector protein | phrog_123 | tail terminator | connector | 1 | 8608 | 9093 |
| ASR87312.1 | MF140421_p40 | DNA binding protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 34951 | 35166 |
| ASR87315.1 | MF140421_p43 | hypothetical protein | phrog_5916 | unknown function | unknown function | 1 | 36476 | 36838 |
| ASR87367.1 | MF140421_p95 | hypothetical protein | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 61732 | 62151 |
| ASR87317.1 | MF140421_p45 | hypothetical protein | phrog_17914 | unknown function | unknown function | 1 | 37831 | 38049 |
| ASR87294.1 | MF140421_p22 | minor tail protein | phrog_416 | minor tail protein | tail | 1 | 22247 | 23464 |
| ASR87279.1 | MF140421_p7 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 4416 | 5486 |
| ASR87295.1 | MF140421_p23 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 23494 | 23877 |
| ASR87283.1 | MF140421_p11 | head-to-tail connector protein | phrog_5309 | head-tail adaptor | connector | 1 | 7844 | 8182 |
| ASR87306.1 | MF140421_p34 | DNA binding protein | phrog_1223 | nucloid associated Lsr2-like | DNA, RNA and nucleotide metabolism | -1 | 30484 | 30921 |
| ASR87290.1 | MF140421_p18 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 16490 | 17380 |
| ASR87292.1 | MF140421_p20 | minor tail protein | phrog_4413 | minor tail protein | tail | 1 | 19275 | 19724 |
| ASR87302.1 | MF140421_p30 | hypothetical protein | phrog_726 | unknown function | unknown function | 1 | 28374 | 28793 |
| ASR87273.1 | MF140421_p1 | hypothetical protein | phrog_23622 | unknown function | unknown function | 1 | 84 | 473 |
| ASR87316.1 | MF140421_p44 | hypothetical protein | phrog_1649 | metallo-phosphoesterase | other | 1 | 37022 | 37831 |
| ASR87310.1 | MF140421_p38 | immunity repressor | phrog_1746 | transcriptional repressor | transcription regulation | -1 | 34133 | 34516 |
| ASR87337.1 | MF140421_p65 | hypothetical protein | phrog_1882 | unknown function | unknown function | 1 | 47241 | 47921 |
| ASR87368.1 | MF140421_p96 | hypothetical protein | phrog_3699 | unknown function | unknown function | 1 | 62151 | 62381 |
| ASR87342.1 | MF140421_p70 | hypothetical protein | phrog_6206 | unknown function | unknown function | 1 | 49766 | 49915 |
| ASR87305.1 | MF140421_p33 | nucleotidyltransferase | phrog_388 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | -1 | 29647 | 30387 |
| ASR87327.1 | MF140421_p55 | hypothetical protein | phrog_5872 | unknown function | unknown function | 1 | 42980 | 43297 |
| ASR87298.1 | MF140421_p26 | lysin A | phrog_317 | endolysin | lysis | 1 | 24962 | 26434 |
| ASR87303.1 | MF140421_p31 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 28784 | 29050 |
| ASR87278.1 | MF140421_p6 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2756 | 4399 |
| ASR87362.1 | MF140421_p90 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 59838 | 60107 |
| ASR87286.1 | MF140421_p14 | major tail protein | phrog_476 | major tail protein | tail | 1 | 9123 | 10025 |
| ASR87308.1 | MF140421_p36 | integrase | phrog_1 | integrase | integration and excision | 1 | 31898 | 33190 |
| ASR87351.1 | MF140421_p79 | hypothetical protein | phrog_1568 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 54624 | 55190 |
| ASR87320.1 | MF140421_p48 | membrane protein | phrog_200 | lipoprotein | other | 1 | 38576 | 39508 |
| ASR87349.1 | MF140421_p77 | WhiB family transcription factor | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 54067 | 54390 |
| ASR87296.1 | MF140421_p24 | hypothetical protein | phrog_3856 | minor tail protein | tail | 1 | 23889 | 24830 |
| ASR87277.1 | MF140421_p5 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1190 | 2755 |
| ASR87341.1 | MF140421_p69 | hypothetical protein | phrog_18534 | unknown function | unknown function | 1 | 49615 | 49773 |
| ASR87281.1 | MF140421_p9 | major capsid protein | phrog_283 | major head protein | head and packaging | 1 | 6200 | 7360 |
| ASR87330.1 | MF140421_p58 | hypothetical protein | phrog_7425 | unknown function | unknown function | 1 | 43590 | 43781 |
| ASR87326.1 | MF140421_p54 | hypothetical protein | phrog_301 | secreted protein | other | 1 | 42646 | 42987 |
| ASR87384.1 | MF140421_p112 | hypothetical protein | phrog_26014 | unknown function | unknown function | -1 | 69044 | 69271 |
| ASR87382.1 | MF140421_p110 | hypothetical protein | phrog_3777 | unknown function | unknown function | -1 | 68053 | 68433 |
| ASR87365.1 | MF140421_p93 | hypothetical protein | phrog_397 | unknown function | unknown function | 1 | 61205 | 61339 |
| ASR87373.1 | MF140421_p101 | hypothetical protein | phrog_19018 | unknown function | unknown function | 1 | 63397 | 63570 |
| ASR87357.1 | MF140421_p85 | hypothetical protein | phrog_7495 | unknown function | unknown function | 1 | 58086 | 58631 |
| ASR87348.1 | MF140421_p76 | WhiB family transcription factor | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 53801 | 54070 |
| ASR87340.1 | MF140421_p68 | hypothetical protein | phrog_23047 | unknown function | unknown function | 1 | 49412 | 49618 |
| ASR87297.1 | MF140421_p25 | hypothetical protein | phrog_1087 | unknown function | unknown function | 1 | 24855 | 24962 |
| ASR87347.1 | MF140421_p75 | resolvase | phrog_34 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 53440 | 53832 |
| ASR87350.1 | MF140421_p78 | hypothetical protein | phrog_1941 | unknown function | unknown function | 1 | 54380 | 54634 |
| ASR87301.1 | MF140421_p29 | hypothetical protein | phrog_5963 | holin | lysis | 1 | 27907 | 28371 |
| ASR87335.1 | MF140421_p63 | hypothetical protein | phrog_1389 | unknown function | unknown function | 1 | 46116 | 46487 |
| ASR87300.1 | MF140421_p28 | lysin B | phrog_102 | endolysin | lysis | 1 | 26850 | 27893 |
| ASR87334.1 | MF140421_p62 | DNA binding protein | phrog_7527 | unknown function | unknown function | 1 | 45806 | 46123 |
| ASR87346.1 | MF140421_p74 | hypothetical protein | phrog_6064 | unknown function | unknown function | 1 | 53257 | 53439 |
| ASR87353.1 | MF140421_p81 | hypothetical protein | phrog_353 | toxin | moron, auxiliary metabolic gene and host takeover | 1 | 55591 | 55809 |
| ASR87328.1 | MF140421_p56 | hypothetical protein | phrog_17581 | unknown function | unknown function | 1 | 43294 | 43446 |
| ASR87280.1 | MF140421_p8 | scaffolding protein | phrog_3760 | head scaffolding protein | head and packaging | 1 | 5542 | 6141 |
| ASR87354.1 | MF140421_p82 | hypothetical protein | phrog_15155 | unknown function | unknown function | 1 | 55806 | 56138 |
| ASR87325.1 | MF140421_p53 | RNA binding protein | phrog_850 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 40825 | 42264 |
| ASR87372.1 | MF140421_p100 | hypothetical protein | phrog_10290 | unknown function | unknown function | 1 | 62999 | 63202 |
| ASR87288.1 | MF140421_p15 | tail assembly chaperone | phrog_2624 | tail assembly chaperone | tail | 1 | 10124 | 10946 |
| ASR87307.1 | MF140421_p35 | hypothetical protein | phrog_17141 | unknown function | unknown function | -1 | 31008 | 31391 |
| ASR87291.1 | MF140421_p19 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 17373 | 19136 |
| ASR87376.1 | MF140421_p104 | hypothetical protein | phrog_6170 | unknown function | unknown function | 1 | 65127 | 65513 |
| ASR87333.1 | MF140421_p61 | ERF family ssDNA binding protein | phrog_5917 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 45537 | 45809 |
| ASR87356.1 | MF140421_p84 | protease | phrog_94 | head maturation protease | head and packaging | 1 | 57433 | 58086 |
| ASR87331.1 | MF140421_p59 | hypothetical protein | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 44021 | 44758 |
| ASR87379.1 | MF140421_p107 | hypothetical protein | phrog_32898 | unknown function | unknown function | -1 | 66721 | 66855 |
| ASR87383.1 | MF140421_p111 | hypothetical protein | phrog_16092 | unknown function | unknown function | -1 | 68802 | 69017 |
| ASR87361.1 | MF140421_p89 | HNH endonuclease | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 59344 | 59751 |
| ASR87282.1 | MF140421_p10 | head-to-tail connector protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 7371 | 7847 |
| ASR87374.1 | MF140421_p102 | hypothetical protein | phrog_28919 | unknown function | unknown function | 1 | 63982 | 64236 |
| ASR87359.1 | MF140421_p87 | hypothetical protein | phrog_2218 | unknown function | unknown function | 1 | 58733 | 58963 |
| ASR87313.1 | MF140421_p41 | hypothetical protein | phrog_762 | unknown function | unknown function | 1 | 35163 | 35558 |
| ASR87366.1 | MF140421_p94 | hypothetical protein | phrog_6439 | unknown function | unknown function | 1 | 61339 | 61581 |
| ASR87363.1 | MF140421_p91 | hypothetical protein | phrog_4472 | nucleotide kinase | other | 1 | 60085 | 60426 |
| ASR87311.1 | MF140421_p39 | hypothetical protein | phrog_1702 | transcriptional repressor | transcription regulation | 1 | 34655 | 34954 |
| ASR87375.1 | MF140421_p103 | hypothetical protein | phrog_940 | nuclease | DNA, RNA and nucleotide metabolism | 1 | 64433 | 65140 |
| ASR87329.1 | MF140421_p57 | hypothetical protein | phrog_5858 | unknown function | unknown function | 1 | 43424 | 43600 |
| ASR87319.1 | MF140421_p47 | hypothetical protein | phrog_17191 | unknown function | unknown function | 1 | 38331 | 38507 |
| ASR87321.1 | MF140421_p49 | hypothetical protein | phrog_4870 | unknown function | unknown function | 1 | 39680 | 40075 |
| ASR87378.1 | MF140421_p106 | hypothetical protein | phrog_4776 | unknown function | unknown function | -1 | 65966 | 66592 |
| ASR87318.1 | MF140421_p46 | hypothetical protein | phrog_6017 | unknown function | unknown function | 1 | 38039 | 38353 |
| ASR87323.1 | MF140421_p51 | hypothetical protein | phrog_1498 | unknown function | unknown function | 1 | 40419 | 40580 |
| ASR87369.1 | MF140421_p97 | hypothetical protein | phrog_6027 | unknown function | unknown function | 1 | 62374 | 62493 |
| ASR87364.1 | MF140421_p92 | DNA polymerase III subunit | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 60423 | 61205 |
| ASR87287.1 | MF140421_p16 | tail assembly chaperone | phrog_4464 | tail assembly chaperone | tail | 1 | 10124 | 10399 |
| ASR87322.1 | MF140421_p50 | hypothetical protein | phrog_2380 | unknown function | unknown function | 1 | 40072 | 40317 |
| ASR87380.1 | MF140421_p108 | hypothetical protein | phrog_6230 | unknown function | unknown function | -1 | 66858 | 67097 |
| ASR87344.1 | MF140421_p72 | ribose-phosphate pyrophosphokinase | phrog_448 | nicotinamide phosphoribosyl transferase | other | 1 | 50757 | 52232 |
| ASR87339.1 | MF140421_p67 | hypothetical protein | phrog_1821 | transcriptional regulator WhiB-like | transcription regulation | 1 | 49180 | 49461 |
| ASR87352.1 | MF140421_p80 | ssDNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 55183 | 55566 |
| ASR87314.1 | MF140421_p42 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 35730 | 36053 |
| ASR87332.1 | MF140421_p60 | ERF family ssDNA binding protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 44770 | 45537 |
| ASR87284.1 | MF140421_p12 | head-to-tail connector protein | phrog_5775 | head-tail connector protein | connector | 1 | 8182 | 8598 |
| ASR87345.1 | MF140421_p73 | polynucleotide kinase | phrog_505 | polynucleotide kinase | other | 1 | 52319 | 53257 |
| ASR87304.1 | MF140421_p32 | hypothetical protein | phrog_6558 | unknown function | unknown function | -1 | 29361 | 29636 |
| ASR87299.1 | MF140421_p27 | holin | phrog_526 | holin | lysis | 1 | 26434 | 26850 |
| ASR87274.1 | MF140421_p2 | terminase small subunit | phrog_1496 | terminase small subunit | head and packaging | 1 | 481 | 852 |
| ASR87381.1 | MF140421_p109 | hypothetical protein | phrog_1909 | unknown function | unknown function | -1 | 67126 | 67986 |
| ASR87377.1 | MF140421_p105 | hypothetical protein | phrog_20848 | unknown function | unknown function | -1 | 65720 | 65965 |
| ASR87275.1 | MF140421_p3 | hypothetical protein | phrog_18572 | unknown function | unknown function | 1 | 860 | 1048 |
| ASR87293.1 | MF140421_p21 | minor tail protein | phrog_746 | minor tail protein | tail | 1 | 19724 | 22237 |