Genomic map of Mycobacterium phage Avocado (MF141540)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MF141540
Definition
Mycobacterium phage Avocado, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
DB of origin
NUCCORE
Length
45389
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
68
%GC
68.73
Number of singletons
3
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ASR77212.1 MF141540_p10 head-to-tail connector protein phrog_763 head-tail adaptor connector 1 8948 9304
ASR77251.1 MF141540_p50 hypothetical protein phrog_25673 unknown function unknown function 1 38044 38634
ASR77257.1 MF141540_p56 hypothetical protein phrog_7600 unknown function unknown function 1 40702 41154
ASR77218.1 MF141540_p16 tape measure protein phrog_971 endolysin lysis 1 11691 15731
ASR77261.1 MF141540_p60 hypothetical protein phrog_21149 unknown function unknown function 1 41904 42116
ASR77221.1 MF141540_p19 minor tail protein phrog_1697 minor tail protein tail 1 18653 19183
ASR77223.1 MF141540_p21 minor tail protein phrog_1736 minor tail protein tail 1 20322 20762
ASR77208.1 MF141540_p6 scaffolding protein phrog_233 head scaffolding protein head and packaging 1 6633 7214
ASR77205.1 MF141540_p3 portal protein phrog_104 portal protein head and packaging 1 1932 3473
ASR77224.1 MF141540_p22 minor tail protein phrog_346 minor tail protein tail 1 20763 23240
ASR77235.1 MF141540_p33 hypothetical protein phrog_17562 unknown function unknown function 1 30289 30993
ASR77217.1 MF141540_p14 tail assembly chaperone phrog_1326 tail assembly chaperone tail 1 10731 11689
ASR77269.1 MF141540_p64 hypothetical protein singleton unknown function unknown function 1 43863 44054
ASR77241.1 MF141540_p40 hypothetical protein phrog_7392 unknown function unknown function 1 32687 33001
ASR77229.1 MF141540_p27 lysin B phrog_102 endolysin lysis 1 26851 28068
ASR77203.1 MF141540_p1 terminase small subunit phrog_1459 terminase small subunit head and packaging 1 54 380
ASR77204.1 MF141540_p2 terminase large subunit phrog_2 terminase large subunit head and packaging 1 352 1935
ASR77265.1 MF141540_p65 hypothetical protein singleton unknown function unknown function 1 44071 44199
ASR77267.1 MF141540_p67 HNH endonuclease phrog_338 HNH endonuclease DNA, RNA and nucleotide metabolism 1 44700 45026
ASR77256.1 MF141540_p55 hypothetical protein phrog_23207 unknown function unknown function 1 40406 40705
ASR77227.1 MF141540_p25 hypothetical protein phrog_27155 unknown function unknown function 1 25078 25503
ASR77234.1 MF141540_p32 hypothetical protein phrog_5081 unknown function unknown function 1 29799 30224
ASR77240.1 MF141540_p39 hypothetical protein phrog_7486 unknown function unknown function 1 32524 32694
ASR77232.1 MF141540_p30 hypothetical protein phrog_798 unknown function unknown function 1 28826 29482
ASR77264.1 MF141540_p63 hypothetical protein phrog_25837 unknown function unknown function 1 43051 43698
ASR77213.1 MF141540_p11 head-to-tail connector protein phrog_387 neck protein connector 1 9291 9545
ASR77263.1 MF141540_p62 hypothetical protein phrog_18332 unknown function unknown function 1 42656 42994
ASR77230.1 MF141540_p28 holin phrog_7198 holin lysis 1 28122 28472
ASR77220.1 MF141540_p18 minor tail protein phrog_110 minor tail protein tail 1 16914 18653
ASR77207.1 MF141540_p5 hypothetical protein phrog_1757 unknown function unknown function 1 6369 6566
ASR77239.1 MF141540_p37 hypothetical protein phrog_986 RNA-binding protein DNA, RNA and nucleotide metabolism 1 31962 32303
ASR77209.1 MF141540_p7 major capsid protein phrog_10 major head protein head and packaging 1 7255 8157
ASR77260.1 MF141540_p59 hypothetical protein phrog_37961 unknown function unknown function 1 41685 41891
ASR77255.1 MF141540_p54 hypothetical protein phrog_16002 unknown function unknown function 1 40128 40403
ASR77216.1 MF141540_p15 tail assembly chaperone phrog_1861 unknown function unknown function 1 10731 11291
ASR77215.1 MF141540_p13 major tail protein phrog_117 major tail protein tail 1 10012 10632
ASR77270.1 MF141540_p38 hypothetical protein phrog_16899 unknown function unknown function 1 32303 32527
ASR77258.1 MF141540_p57 helix-turn-helix DNA binding domain protein phrog_13172 HTH DNA binding protein DNA, RNA and nucleotide metabolism 1 41151 41306
ASR77259.1 MF141540_p58 hypothetical protein phrog_8588 unknown function unknown function 1 41310 41627
ASR77266.1 MF141540_p66 hypothetical protein phrog_7328 unknown function unknown function 1 44405 44683
ASR77219.1 MF141540_p17 minor tail protein phrog_106 minor tail protein tail 1 15733 16914
ASR77262.1 MF141540_p61 hypothetical protein phrog_19791 unknown function unknown function 1 42225 42659
ASR77252.1 MF141540_p51 hypothetical protein phrog_7576 unknown function unknown function 1 38631 39161
ASR77248.1 MF141540_p47 hypothetical protein phrog_1374 unknown function unknown function 1 37189 37362
ASR77214.1 MF141540_p12 head-to-tail connector protein phrog_123 tail terminator connector 1 9569 10015
ASR77206.1 MF141540_p4 capsid maturation protease phrog_1752 head maturation protease head and packaging 1 3454 6372
ASR77211.1 MF141540_p9 head-to-tail connector protein phrog_1290 head-tail adaptor connector 1 8415 8948
ASR77246.1 MF141540_p45 hypothetical protein singleton unknown function unknown function 1 36502 36645
ASR77268.1 MF141540_p68 hypothetical protein phrog_4307 unknown function unknown function 1 45054 45353
ASR77210.1 MF141540_p8 head-to-tail connector protein phrog_24650 head-tail connector protein connector 1 8194 8397
ASR77228.1 MF141540_p26 lysin A phrog_317 endolysin lysis 1 25496 26851
ASR77233.1 MF141540_p31 helix-turn-helix DNA binding domain protein phrog_7506 recombination directionality factor integration and excision 1 29572 29802
ASR77254.1 MF141540_p53 hypothetical protein phrog_21349 unknown function unknown function 1 39742 40128
ASR77226.1 MF141540_p24 hypothetical protein phrog_240 head protein head and packaging 1 24672 25055
ASR77249.1 MF141540_p48 hypothetical protein phrog_19129 unknown function unknown function 1 37440 37769
ASR77245.1 MF141540_p44 ssDNA binding protein phrog_4171 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 35068 36498
ASR77253.1 MF141540_p52 RuvC-like resolvase phrog_159 RuvC-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 39158 39742
ASR77250.1 MF141540_p49 hypothetical protein phrog_7826 unknown function unknown function 1 37769 38047
ASR77225.1 MF141540_p23 minor tail protein phrog_416 minor tail protein tail 1 23240 24646
ASR77237.1 MF141540_p35 hypothetical protein phrog_20257 unknown function unknown function 1 31259 31633
ASR77238.1 MF141540_p36 hypothetical protein phrog_31599 unknown function unknown function 1 31630 31965
ASR77247.1 MF141540_p46 hypothetical protein phrog_7227 unknown function unknown function 1 36647 37189
ASR77236.1 MF141540_p34 hypothetical protein phrog_23845 unknown function unknown function 1 30990 31262
ASR77244.1 MF141540_p43 exonuclease phrog_412 exonuclease VIII DNA, RNA and nucleotide metabolism 1 33992 35071
ASR77222.1 MF141540_p20 minor tail protein phrog_1565 minor tail protein tail 1 19180 20325
ASR77242.1 MF141540_p41 hypothetical protein phrog_6734 unknown function unknown function 1 32998 33153
ASR77231.1 MF141540_p29 hypothetical protein phrog_1177 unknown function unknown function 1 28477 28833
ASR77243.1 MF141540_p42 helix-turn-helix DNA binding domain protein phrog_5931 unknown function unknown function 1 33150 33995