| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF141540 |
Definition |
Mycobacterium phage Avocado, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
NUCCORE |
Length |
45389 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
68 |
%GC |
68.73 |
Number of singletons |
3 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ASR77212.1 | MF141540_p10 | head-to-tail connector protein | phrog_763 | head-tail adaptor | connector | 1 | 8948 | 9304 |
| ASR77251.1 | MF141540_p50 | hypothetical protein | phrog_25673 | unknown function | unknown function | 1 | 38044 | 38634 |
| ASR77257.1 | MF141540_p56 | hypothetical protein | phrog_7600 | unknown function | unknown function | 1 | 40702 | 41154 |
| ASR77218.1 | MF141540_p16 | tape measure protein | phrog_971 | endolysin | lysis | 1 | 11691 | 15731 |
| ASR77261.1 | MF141540_p60 | hypothetical protein | phrog_21149 | unknown function | unknown function | 1 | 41904 | 42116 |
| ASR77221.1 | MF141540_p19 | minor tail protein | phrog_1697 | minor tail protein | tail | 1 | 18653 | 19183 |
| ASR77223.1 | MF141540_p21 | minor tail protein | phrog_1736 | minor tail protein | tail | 1 | 20322 | 20762 |
| ASR77208.1 | MF141540_p6 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 6633 | 7214 |
| ASR77205.1 | MF141540_p3 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 1932 | 3473 |
| ASR77224.1 | MF141540_p22 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 20763 | 23240 |
| ASR77235.1 | MF141540_p33 | hypothetical protein | phrog_17562 | unknown function | unknown function | 1 | 30289 | 30993 |
| ASR77217.1 | MF141540_p14 | tail assembly chaperone | phrog_1326 | tail assembly chaperone | tail | 1 | 10731 | 11689 |
| ASR77269.1 | MF141540_p64 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43863 | 44054 |
| ASR77241.1 | MF141540_p40 | hypothetical protein | phrog_7392 | unknown function | unknown function | 1 | 32687 | 33001 |
| ASR77229.1 | MF141540_p27 | lysin B | phrog_102 | endolysin | lysis | 1 | 26851 | 28068 |
| ASR77203.1 | MF141540_p1 | terminase small subunit | phrog_1459 | terminase small subunit | head and packaging | 1 | 54 | 380 |
| ASR77204.1 | MF141540_p2 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 352 | 1935 |
| ASR77265.1 | MF141540_p65 | hypothetical protein | singleton | unknown function | unknown function | 1 | 44071 | 44199 |
| ASR77267.1 | MF141540_p67 | HNH endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 44700 | 45026 |
| ASR77256.1 | MF141540_p55 | hypothetical protein | phrog_23207 | unknown function | unknown function | 1 | 40406 | 40705 |
| ASR77227.1 | MF141540_p25 | hypothetical protein | phrog_27155 | unknown function | unknown function | 1 | 25078 | 25503 |
| ASR77234.1 | MF141540_p32 | hypothetical protein | phrog_5081 | unknown function | unknown function | 1 | 29799 | 30224 |
| ASR77240.1 | MF141540_p39 | hypothetical protein | phrog_7486 | unknown function | unknown function | 1 | 32524 | 32694 |
| ASR77232.1 | MF141540_p30 | hypothetical protein | phrog_798 | unknown function | unknown function | 1 | 28826 | 29482 |
| ASR77264.1 | MF141540_p63 | hypothetical protein | phrog_25837 | unknown function | unknown function | 1 | 43051 | 43698 |
| ASR77213.1 | MF141540_p11 | head-to-tail connector protein | phrog_387 | neck protein | connector | 1 | 9291 | 9545 |
| ASR77263.1 | MF141540_p62 | hypothetical protein | phrog_18332 | unknown function | unknown function | 1 | 42656 | 42994 |
| ASR77230.1 | MF141540_p28 | holin | phrog_7198 | holin | lysis | 1 | 28122 | 28472 |
| ASR77220.1 | MF141540_p18 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 16914 | 18653 |
| ASR77207.1 | MF141540_p5 | hypothetical protein | phrog_1757 | unknown function | unknown function | 1 | 6369 | 6566 |
| ASR77239.1 | MF141540_p37 | hypothetical protein | phrog_986 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 31962 | 32303 |
| ASR77209.1 | MF141540_p7 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 7255 | 8157 |
| ASR77260.1 | MF141540_p59 | hypothetical protein | phrog_37961 | unknown function | unknown function | 1 | 41685 | 41891 |
| ASR77255.1 | MF141540_p54 | hypothetical protein | phrog_16002 | unknown function | unknown function | 1 | 40128 | 40403 |
| ASR77216.1 | MF141540_p15 | tail assembly chaperone | phrog_1861 | unknown function | unknown function | 1 | 10731 | 11291 |
| ASR77215.1 | MF141540_p13 | major tail protein | phrog_117 | major tail protein | tail | 1 | 10012 | 10632 |
| ASR77270.1 | MF141540_p38 | hypothetical protein | phrog_16899 | unknown function | unknown function | 1 | 32303 | 32527 |
| ASR77258.1 | MF141540_p57 | helix-turn-helix DNA binding domain protein | phrog_13172 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 41151 | 41306 |
| ASR77259.1 | MF141540_p58 | hypothetical protein | phrog_8588 | unknown function | unknown function | 1 | 41310 | 41627 |
| ASR77266.1 | MF141540_p66 | hypothetical protein | phrog_7328 | unknown function | unknown function | 1 | 44405 | 44683 |
| ASR77219.1 | MF141540_p17 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 15733 | 16914 |
| ASR77262.1 | MF141540_p61 | hypothetical protein | phrog_19791 | unknown function | unknown function | 1 | 42225 | 42659 |
| ASR77252.1 | MF141540_p51 | hypothetical protein | phrog_7576 | unknown function | unknown function | 1 | 38631 | 39161 |
| ASR77248.1 | MF141540_p47 | hypothetical protein | phrog_1374 | unknown function | unknown function | 1 | 37189 | 37362 |
| ASR77214.1 | MF141540_p12 | head-to-tail connector protein | phrog_123 | tail terminator | connector | 1 | 9569 | 10015 |
| ASR77206.1 | MF141540_p4 | capsid maturation protease | phrog_1752 | head maturation protease | head and packaging | 1 | 3454 | 6372 |
| ASR77211.1 | MF141540_p9 | head-to-tail connector protein | phrog_1290 | head-tail adaptor | connector | 1 | 8415 | 8948 |
| ASR77246.1 | MF141540_p45 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36502 | 36645 |
| ASR77268.1 | MF141540_p68 | hypothetical protein | phrog_4307 | unknown function | unknown function | 1 | 45054 | 45353 |
| ASR77210.1 | MF141540_p8 | head-to-tail connector protein | phrog_24650 | head-tail connector protein | connector | 1 | 8194 | 8397 |
| ASR77228.1 | MF141540_p26 | lysin A | phrog_317 | endolysin | lysis | 1 | 25496 | 26851 |
| ASR77233.1 | MF141540_p31 | helix-turn-helix DNA binding domain protein | phrog_7506 | recombination directionality factor | integration and excision | 1 | 29572 | 29802 |
| ASR77254.1 | MF141540_p53 | hypothetical protein | phrog_21349 | unknown function | unknown function | 1 | 39742 | 40128 |
| ASR77226.1 | MF141540_p24 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 24672 | 25055 |
| ASR77249.1 | MF141540_p48 | hypothetical protein | phrog_19129 | unknown function | unknown function | 1 | 37440 | 37769 |
| ASR77245.1 | MF141540_p44 | ssDNA binding protein | phrog_4171 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 35068 | 36498 |
| ASR77253.1 | MF141540_p52 | RuvC-like resolvase | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 39158 | 39742 |
| ASR77250.1 | MF141540_p49 | hypothetical protein | phrog_7826 | unknown function | unknown function | 1 | 37769 | 38047 |
| ASR77225.1 | MF141540_p23 | minor tail protein | phrog_416 | minor tail protein | tail | 1 | 23240 | 24646 |
| ASR77237.1 | MF141540_p35 | hypothetical protein | phrog_20257 | unknown function | unknown function | 1 | 31259 | 31633 |
| ASR77238.1 | MF141540_p36 | hypothetical protein | phrog_31599 | unknown function | unknown function | 1 | 31630 | 31965 |
| ASR77247.1 | MF141540_p46 | hypothetical protein | phrog_7227 | unknown function | unknown function | 1 | 36647 | 37189 |
| ASR77236.1 | MF141540_p34 | hypothetical protein | phrog_23845 | unknown function | unknown function | 1 | 30990 | 31262 |
| ASR77244.1 | MF141540_p43 | exonuclease | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | 1 | 33992 | 35071 |
| ASR77222.1 | MF141540_p20 | minor tail protein | phrog_1565 | minor tail protein | tail | 1 | 19180 | 20325 |
| ASR77242.1 | MF141540_p41 | hypothetical protein | phrog_6734 | unknown function | unknown function | 1 | 32998 | 33153 |
| ASR77231.1 | MF141540_p29 | hypothetical protein | phrog_1177 | unknown function | unknown function | 1 | 28477 | 28833 |
| ASR77243.1 | MF141540_p42 | helix-turn-helix DNA binding domain protein | phrog_5931 | unknown function | unknown function | 1 | 33150 | 33995 |