| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF150911 |
Definition |
Ralstonia phage DU_RP_II, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae. |
DB of origin |
NUCCORE |
Length |
42091 |
Host Name |
Ralstonia solanacearum |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
38 |
%GC |
62.16 |
Number of singletons |
6 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ASN73039.1 | MF150911_p2 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 982 | 2484 |
| ASN73070.1 | MF150911_p33 | hypothetical protein | phrog_60 | unknown function | unknown function | -1 | 36369 | 37646 |
| ASN73068.1 | MF150911_p31 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34058 | 34570 |
| ASN73047.1 | MF150911_p10 | hypothetical protein | phrog_376 | tail protein | tail | 1 | 8976 | 11315 |
| ASN73055.1 | MF150911_p18 | lysozyme | phrog_7 | endolysin | lysis | 1 | 22724 | 23236 |
| ASN73049.1 | MF150911_p12 | hypothetical protein | phrog_418 | internal virion protein | head and packaging | 1 | 11735 | 12220 |
| ASN73045.1 | MF150911_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7344 | 7775 |
| ASN73066.1 | MF150911_p29 | PD-(D/E)XK nuclease superfamily protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 32903 | 33817 |
| ASN73054.1 | MF150911_p17 | holin | phrog_1356 | holin | lysis | 1 | 22522 | 22740 |
| ASN73052.1 | MF150911_p15 | hypothetical protein | phrog_684 | virion structural protein | head and packaging | 1 | 16334 | 19543 |
| ASN73046.1 | MF150911_p9 | RecT family recombinase | phrog_394 | tail protein | tail | 1 | 8353 | 8973 |
| ASN73071.1 | MF150911_p34 | RNaseH-like domain protein | phrog_1770 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 37938 | 38417 |
| ASN73058.1 | MF150911_p21 | polysaccharide deacetylase | phrog_24355 | polysaccharide deacetylase | moron, auxiliary metabolic gene and host takeover | 1 | 25266 | 25664 |
| ASN73042.1 | MF150911_p5 | hypothetical protein | phrog_4437 | unknown function | unknown function | 1 | 4670 | 4948 |
| ASN73072.1 | MF150911_p35 | hypothetical protein | singleton | unknown function | unknown function | -1 | 38976 | 39263 |
| ASN73038.1 | MF150911_p1 | hypothetical protein | phrog_1482 | terminase small subunit | head and packaging | 1 | 43 | 573 |
| ASN73061.1 | MF150911_p24 | integrase | phrog_1156 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 27317 | 29485 |
| ASN73065.1 | MF150911_p28 | AP2 domain-containing protein | phrog_2081 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 32463 | 32903 |
| ASN73067.1 | MF150911_p30 | hypothetical protein | singleton | unknown function | unknown function | -1 | 33807 | 34061 |
| ASN73064.1 | MF150911_p27 | DNA binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 31890 | 32444 |
| ASN73063.1 | MF150911_p26 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 29712 | 31718 |
| ASN73043.1 | MF150911_p6 | hypothetical protein | phrog_3742 | unknown function | unknown function | 1 | 4945 | 5832 |
| ASN73050.1 | MF150911_p13 | hypothetical protein | phrog_992 | head protein | head and packaging | 1 | 12223 | 14862 |
| ASN73048.1 | MF150911_p11 | hypothetical protein | phrog_4177 | unknown function | unknown function | 1 | 11312 | 11734 |
| ASN73056.1 | MF150911_p19 | hypothetical protein | phrog_312 | Rz-like spanin | lysis | 1 | 23233 | 23757 |
| ASN73041.1 | MF150911_p4 | head-tail connector protein | phrog_332 | head-tail adaptor | connector | 1 | 2839 | 4533 |
| ASN73060.1 | MF150911_p23 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | -1 | 27138 | 27320 |
| ASN73044.1 | MF150911_p7 | major capsid protein | phrog_3437 | major head protein | head and packaging | 1 | 6429 | 7331 |
| ASN73057.1 | MF150911_p20 | minor tail protein | phrog_36911 | unknown function | unknown function | 1 | 23790 | 25256 |
| ASN73053.1 | MF150911_p16 | hypothetical protein | phrog_19253 | unknown function | unknown function | 1 | 19634 | 22150 |
| ASN73051.1 | MF150911_p14 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14841 | 16337 |
| ASN73040.1 | MF150911_p3 | hypothetical protein | phrog_831 | unknown function | unknown function | 1 | 2625 | 2837 |
| ASN73059.1 | MF150911_p22 | integrase | phrog_1 | integrase | integration and excision | -1 | 25801 | 26949 |
| ASN73062.1 | MF150911_p25 | hypothetical protein | phrog_54 | DksA-like zinc-finger protein | other | -1 | 29487 | 29693 |
| ASN73075.1 | MF150911_p38 | hypothetical protein | phrog_31662 | unknown function | unknown function | -1 | 41837 | 42013 |
| ASN73074.1 | MF150911_p37 | hypothetical protein | singleton | unknown function | unknown function | -1 | 41490 | 41696 |
| ASN73069.1 | MF150911_p32 | DNA helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 34641 | 36023 |
| ASN73073.1 | MF150911_p36 | hypothetical protein | phrog_923 | unknown function | unknown function | -1 | 39260 | 40003 |