Genomic map of Ralstonia phage DU_RP_II (MF150911)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MF150911
Definition
Ralstonia phage DU_RP_II, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae.
DB of origin
NUCCORE
Length
42091
Host Name
Ralstonia solanacearum
Host domain
Bacteria
Is prophage?
undef
Number of proteins
38
%GC
62.16
Number of singletons
6
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ASN73039.1 MF150911_p2 terminase large subunit phrog_2 terminase large subunit head and packaging 1 982 2484
ASN73070.1 MF150911_p33 hypothetical protein phrog_60 unknown function unknown function -1 36369 37646
ASN73068.1 MF150911_p31 hypothetical protein singleton unknown function unknown function -1 34058 34570
ASN73047.1 MF150911_p10 hypothetical protein phrog_376 tail protein tail 1 8976 11315
ASN73055.1 MF150911_p18 lysozyme phrog_7 endolysin lysis 1 22724 23236
ASN73049.1 MF150911_p12 hypothetical protein phrog_418 internal virion protein head and packaging 1 11735 12220
ASN73045.1 MF150911_p8 hypothetical protein singleton unknown function unknown function 1 7344 7775
ASN73066.1 MF150911_p29 PD-(D/E)XK nuclease superfamily protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 32903 33817
ASN73054.1 MF150911_p17 holin phrog_1356 holin lysis 1 22522 22740
ASN73052.1 MF150911_p15 hypothetical protein phrog_684 virion structural protein head and packaging 1 16334 19543
ASN73046.1 MF150911_p9 RecT family recombinase phrog_394 tail protein tail 1 8353 8973
ASN73071.1 MF150911_p34 RNaseH-like domain protein phrog_1770 Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 37938 38417
ASN73058.1 MF150911_p21 polysaccharide deacetylase phrog_24355 polysaccharide deacetylase moron, auxiliary metabolic gene and host takeover 1 25266 25664
ASN73042.1 MF150911_p5 hypothetical protein phrog_4437 unknown function unknown function 1 4670 4948
ASN73072.1 MF150911_p35 hypothetical protein singleton unknown function unknown function -1 38976 39263
ASN73038.1 MF150911_p1 hypothetical protein phrog_1482 terminase small subunit head and packaging 1 43 573
ASN73061.1 MF150911_p24 integrase phrog_1156 DNA primase DNA, RNA and nucleotide metabolism -1 27317 29485
ASN73065.1 MF150911_p28 AP2 domain-containing protein phrog_2081 HNH endonuclease DNA, RNA and nucleotide metabolism -1 32463 32903
ASN73067.1 MF150911_p30 hypothetical protein singleton unknown function unknown function -1 33807 34061
ASN73064.1 MF150911_p27 DNA binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 31890 32444
ASN73063.1 MF150911_p26 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 29712 31718
ASN73043.1 MF150911_p6 hypothetical protein phrog_3742 unknown function unknown function 1 4945 5832
ASN73050.1 MF150911_p13 hypothetical protein phrog_992 head protein head and packaging 1 12223 14862
ASN73048.1 MF150911_p11 hypothetical protein phrog_4177 unknown function unknown function 1 11312 11734
ASN73056.1 MF150911_p19 hypothetical protein phrog_312 Rz-like spanin lysis 1 23233 23757
ASN73041.1 MF150911_p4 head-tail connector protein phrog_332 head-tail adaptor connector 1 2839 4533
ASN73060.1 MF150911_p23 hypothetical protein phrog_66 excisionase and transcriptional regulator integration and excision -1 27138 27320
ASN73044.1 MF150911_p7 major capsid protein phrog_3437 major head protein head and packaging 1 6429 7331
ASN73057.1 MF150911_p20 minor tail protein phrog_36911 unknown function unknown function 1 23790 25256
ASN73053.1 MF150911_p16 hypothetical protein phrog_19253 unknown function unknown function 1 19634 22150
ASN73051.1 MF150911_p14 hypothetical protein singleton unknown function unknown function 1 14841 16337
ASN73040.1 MF150911_p3 hypothetical protein phrog_831 unknown function unknown function 1 2625 2837
ASN73059.1 MF150911_p22 integrase phrog_1 integrase integration and excision -1 25801 26949
ASN73062.1 MF150911_p25 hypothetical protein phrog_54 DksA-like zinc-finger protein other -1 29487 29693
ASN73075.1 MF150911_p38 hypothetical protein phrog_31662 unknown function unknown function -1 41837 42013
ASN73074.1 MF150911_p37 hypothetical protein singleton unknown function unknown function -1 41490 41696
ASN73069.1 MF150911_p32 DNA helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism -1 34641 36023
ASN73073.1 MF150911_p36 hypothetical protein phrog_923 unknown function unknown function -1 39260 40003