| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF158037 |
Definition |
Salmonella phage St162, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Guernseyvirinae; Cornellvirus; unclassified Cornellvirus. |
DB of origin |
NUCCORE |
Length |
42701 |
Host Name |
Salmonella enterica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
62 |
%GC |
51.21 |
Number of singletons |
3 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATE85599.1 | MF158037_p14 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12977 | 13234 |
| ATE85608.1 | MF158037_p23 | lysozyme | phrog_7 | endolysin | lysis | 1 | 16225 | 16707 |
| ATE85619.1 | MF158037_p34 | portal protein | phrog_145 | portal protein | head and packaging | 1 | 20374 | 21906 |
| ATE85613.1 | MF158037_p28 | hypothetical protein | phrog_1402 | unknown function | unknown function | 1 | 17550 | 17798 |
| ATE85601.1 | MF158037_p16 | hypothetical protein | phrog_23836 | unknown function | unknown function | 1 | 13917 | 14405 |
| ATE85621.1 | MF158037_p36 | tail protein | phrog_3945 | Hoc-like head decoration | head and packaging | 1 | 23367 | 23840 |
| ATE85611.1 | MF158037_p26 | hypothetical protein | phrog_3002 | unknown function | unknown function | 1 | 17199 | 17384 |
| ATE85639.1 | MF158037_p54 | tail assembly chaperone | phrog_313 | Tail assembly chaperone | tail | 1 | 33558 | 33977 |
| ATE85636.1 | MF158037_p51 | hypothetical protein | phrog_179 | tail terminator | connector | 1 | 31499 | 31918 |
| ATE85630.1 | MF158037_p45 | tailspike protein | phrog_4069 | Hoc-like head decoration | head and packaging | 1 | 29040 | 29390 |
| ATE85629.1 | MF158037_p44 | hypothetical protein | phrog_1954 | virion structural protein | head and packaging | 1 | 28733 | 29023 |
| ATE85617.1 | MF158037_p32 | terminase small subunit | phrog_3064 | terminase | head and packaging | 1 | 18560 | 19111 |
| ATE85631.1 | MF158037_p46 | hypothetical protein | phrog_4451 | unknown function | unknown function | 1 | 29424 | 29618 |
| ATE85626.1 | MF158037_p41 | hypothetical protein | phrog_4334 | unknown function | unknown function | -1 | 26400 | 26768 |
| ATE85603.1 | MF158037_p18 | hypothetical protein | phrog_37174 | unknown function | unknown function | 1 | 14599 | 14808 |
| ATE85616.1 | MF158037_p31 | hypothetical protein | phrog_10956 | unknown function | unknown function | 1 | 18305 | 18472 |
| ATE85605.1 | MF158037_p20 | hypothetical protein | phrog_4947 | unknown function | unknown function | 1 | 15188 | 15589 |
| ATE85632.1 | MF158037_p47 | hypothetical protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 29622 | 30131 |
| ATE85597.1 | MF158037_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9997 | 10227 |
| ATE85607.1 | MF158037_p22 | holin | phrog_2508 | holin | lysis | 1 | 15945 | 16244 |
| ATE85602.1 | MF158037_p17 | hypothetical protein | phrog_3766 | unknown function | unknown function | 1 | 14402 | 14596 |
| ATE85591.1 | MF158037_p6 | hypothetical protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 6128 | 6823 |
| ATE85615.1 | MF158037_p30 | hypothetical protein | phrog_268 | unknown function | unknown function | 1 | 18090 | 18308 |
| ATE85588.1 | MF158037_p3 | intein-containing helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 815 | 3157 |
| ATE85623.1 | MF158037_p38 | hypothetical protein | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | -1 | 24259 | 25290 |
| ATE85625.1 | MF158037_p40 | spanin | phrog_1267 | Rz-like spanin | lysis | 1 | 26134 | 26373 |
| ATE85637.1 | MF158037_p52 | tail protein | phrog_290 | minor tail protein | tail | 1 | 31921 | 33087 |
| ATE85590.1 | MF158037_p5 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 3874 | 6072 |
| ATE85644.1 | MF158037_p59 | hypothetical protein | phrog_329 | minor tail protein | tail | 1 | 37464 | 37829 |
| ATE85628.1 | MF158037_p43 | major capsid protein | phrog_247 | major head protein | head and packaging | 1 | 27622 | 28671 |
| ATE85586.1 | MF158037_p1 | hypothetical protein | phrog_5915 | unknown function | unknown function | -1 | 119 | 292 |
| ATE85604.1 | MF158037_p19 | hypothetical protein | phrog_2452 | unknown function | unknown function | 1 | 14841 | 15191 |
| ATE85641.1 | MF158037_p56 | tail tape measure protein | phrog_1538 | tail length tape measure protein | tail | 1 | 34332 | 36452 |
| ATE85643.1 | MF158037_p58 | hypothetical protein | phrog_396 | minor tail protein | tail | 1 | 36952 | 37467 |
| ATE85624.1 | MF158037_p39 | spanin | phrog_2536 | Rz-like spanin | lysis | 1 | 25782 | 26141 |
| ATE85589.1 | MF158037_p4 | endonuclease | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 3458 | 3805 |
| ATE85610.1 | MF158037_p25 | hypothetical protein | phrog_2180 | unknown function | unknown function | 1 | 17055 | 17195 |
| ATE85587.1 | MF158037_p2 | HNH homing endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 292 | 789 |
| ATE85618.1 | MF158037_p33 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 19086 | 20357 |
| ATE85642.1 | MF158037_p57 | hypothetical protein | phrog_384 | virion structural protein | head and packaging | 1 | 36455 | 36955 |
| ATE85646.1 | MF158037_p61 | tailspike protein | phrog_29731 | tail spike protein | tail | 1 | 40391 | 41401 |
| ATE85598.1 | MF158037_p13 | DNA primase/helicase | phrog_3228 | replicative helicase-primase | DNA, RNA and nucleotide metabolism | 1 | 10385 | 12685 |
| ATE85596.1 | MF158037_p11 | DNA binding protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 9779 | 10000 |
| ATE85647.1 | MF158037_p62 | tailspike protein | phrog_23354 | tail spike protein | tail | 1 | 41586 | 42701 |
| ATE85633.1 | MF158037_p48 | hypothetical protein | phrog_3614 | unknown function | unknown function | 1 | 30131 | 30748 |
| ATE85620.1 | MF158037_p35 | head morphogenesis protein | phrog_241 | head morphogenesis | head and packaging | 1 | 22322 | 23365 |
| ATE85614.1 | MF158037_p29 | hypothetical protein | phrog_9023 | unknown function | unknown function | 1 | 17795 | 18016 |
| ATE85609.1 | MF158037_p24 | hypothetical protein | phrog_33443 | unknown function | unknown function | 1 | 16852 | 17058 |
| ATE85600.1 | MF158037_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13819 | 13917 |
| ATE85612.1 | MF158037_p27 | hypothetical protein | phrog_4684 | unknown function | unknown function | 1 | 17384 | 17557 |
| ATE85593.1 | MF158037_p8 | HNH homing endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 8171 | 8674 |
| ATE85622.1 | MF158037_p37 | hypothetical protein | phrog_355 | nucleoside 2-deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | -1 | 23870 | 24193 |
| ATE85595.1 | MF158037_p10 | hypothetical protein | phrog_3127 | unknown function | unknown function | -1 | 8965 | 9621 |
| ATE85592.1 | MF158037_p7 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 6910 | 8187 |
| ATE85638.1 | MF158037_p53 | hypothetical protein | phrog_34162 | unknown function | unknown function | -1 | 33110 | 33394 |
| ATE85594.1 | MF158037_p9 | hypothetical protein | phrog_4965 | unknown function | unknown function | -1 | 8674 | 8916 |
| ATE85645.1 | MF158037_p60 | tail fiber protein | phrog_469 | tail protein | tail | 1 | 37892 | 40378 |
| ATE85627.1 | MF158037_p42 | hypothetical protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 26945 | 27619 |
| ATE85635.1 | MF158037_p50 | tail protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 31104 | 31502 |
| ATE85640.1 | MF158037_p55 | hypothetical protein | phrog_4557 | unknown function | unknown function | 1 | 34145 | 34339 |
| ATE85634.1 | MF158037_p49 | hypothetical protein | phrog_161 | head closure Hc1 | connector | 1 | 30748 | 31107 |
| ATE85606.1 | MF158037_p21 | hypothetical protein | phrog_2359 | holin | lysis | 1 | 15662 | 15943 |