Genomic map of Salmonella phage St162 (MF158037)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MF158037
Definition
Salmonella phage St162, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Guernseyvirinae; Cornellvirus; unclassified Cornellvirus.
DB of origin
NUCCORE
Length
42701
Host Name
Salmonella enterica
Host domain
Bacteria
Is prophage?
undef
Number of proteins
62
%GC
51.21
Number of singletons
3
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ATE85599.1 MF158037_p14 hypothetical protein singleton unknown function unknown function 1 12977 13234
ATE85608.1 MF158037_p23 lysozyme phrog_7 endolysin lysis 1 16225 16707
ATE85619.1 MF158037_p34 portal protein phrog_145 portal protein head and packaging 1 20374 21906
ATE85613.1 MF158037_p28 hypothetical protein phrog_1402 unknown function unknown function 1 17550 17798
ATE85601.1 MF158037_p16 hypothetical protein phrog_23836 unknown function unknown function 1 13917 14405
ATE85621.1 MF158037_p36 tail protein phrog_3945 Hoc-like head decoration head and packaging 1 23367 23840
ATE85611.1 MF158037_p26 hypothetical protein phrog_3002 unknown function unknown function 1 17199 17384
ATE85639.1 MF158037_p54 tail assembly chaperone phrog_313 Tail assembly chaperone tail 1 33558 33977
ATE85636.1 MF158037_p51 hypothetical protein phrog_179 tail terminator connector 1 31499 31918
ATE85630.1 MF158037_p45 tailspike protein phrog_4069 Hoc-like head decoration head and packaging 1 29040 29390
ATE85629.1 MF158037_p44 hypothetical protein phrog_1954 virion structural protein head and packaging 1 28733 29023
ATE85617.1 MF158037_p32 terminase small subunit phrog_3064 terminase head and packaging 1 18560 19111
ATE85631.1 MF158037_p46 hypothetical protein phrog_4451 unknown function unknown function 1 29424 29618
ATE85626.1 MF158037_p41 hypothetical protein phrog_4334 unknown function unknown function -1 26400 26768
ATE85603.1 MF158037_p18 hypothetical protein phrog_37174 unknown function unknown function 1 14599 14808
ATE85616.1 MF158037_p31 hypothetical protein phrog_10956 unknown function unknown function 1 18305 18472
ATE85605.1 MF158037_p20 hypothetical protein phrog_4947 unknown function unknown function 1 15188 15589
ATE85632.1 MF158037_p47 hypothetical protein phrog_477 head-tail adaptor Ad1 connector 1 29622 30131
ATE85597.1 MF158037_p12 hypothetical protein singleton unknown function unknown function 1 9997 10227
ATE85607.1 MF158037_p22 holin phrog_2508 holin lysis 1 15945 16244
ATE85602.1 MF158037_p17 hypothetical protein phrog_3766 unknown function unknown function 1 14402 14596
ATE85591.1 MF158037_p6 hypothetical protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 6128 6823
ATE85615.1 MF158037_p30 hypothetical protein phrog_268 unknown function unknown function 1 18090 18308
ATE85588.1 MF158037_p3 intein-containing helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism -1 815 3157
ATE85623.1 MF158037_p38 hypothetical protein phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism -1 24259 25290
ATE85625.1 MF158037_p40 spanin phrog_1267 Rz-like spanin lysis 1 26134 26373
ATE85637.1 MF158037_p52 tail protein phrog_290 minor tail protein tail 1 31921 33087
ATE85590.1 MF158037_p5 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 3874 6072
ATE85644.1 MF158037_p59 hypothetical protein phrog_329 minor tail protein tail 1 37464 37829
ATE85628.1 MF158037_p43 major capsid protein phrog_247 major head protein head and packaging 1 27622 28671
ATE85586.1 MF158037_p1 hypothetical protein phrog_5915 unknown function unknown function -1 119 292
ATE85604.1 MF158037_p19 hypothetical protein phrog_2452 unknown function unknown function 1 14841 15191
ATE85641.1 MF158037_p56 tail tape measure protein phrog_1538 tail length tape measure protein tail 1 34332 36452
ATE85643.1 MF158037_p58 hypothetical protein phrog_396 minor tail protein tail 1 36952 37467
ATE85624.1 MF158037_p39 spanin phrog_2536 Rz-like spanin lysis 1 25782 26141
ATE85589.1 MF158037_p4 endonuclease phrog_93 endonuclease DNA, RNA and nucleotide metabolism -1 3458 3805
ATE85610.1 MF158037_p25 hypothetical protein phrog_2180 unknown function unknown function 1 17055 17195
ATE85587.1 MF158037_p2 HNH homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 292 789
ATE85618.1 MF158037_p33 terminase large subunit phrog_2 terminase large subunit head and packaging 1 19086 20357
ATE85642.1 MF158037_p57 hypothetical protein phrog_384 virion structural protein head and packaging 1 36455 36955
ATE85646.1 MF158037_p61 tailspike protein phrog_29731 tail spike protein tail 1 40391 41401
ATE85598.1 MF158037_p13 DNA primase/helicase phrog_3228 replicative helicase-primase DNA, RNA and nucleotide metabolism 1 10385 12685
ATE85596.1 MF158037_p11 DNA binding protein phrog_3 transcriptional repressor transcription regulation 1 9779 10000
ATE85647.1 MF158037_p62 tailspike protein phrog_23354 tail spike protein tail 1 41586 42701
ATE85633.1 MF158037_p48 hypothetical protein phrog_3614 unknown function unknown function 1 30131 30748
ATE85620.1 MF158037_p35 head morphogenesis protein phrog_241 head morphogenesis head and packaging 1 22322 23365
ATE85614.1 MF158037_p29 hypothetical protein phrog_9023 unknown function unknown function 1 17795 18016
ATE85609.1 MF158037_p24 hypothetical protein phrog_33443 unknown function unknown function 1 16852 17058
ATE85600.1 MF158037_p15 hypothetical protein singleton unknown function unknown function 1 13819 13917
ATE85612.1 MF158037_p27 hypothetical protein phrog_4684 unknown function unknown function 1 17384 17557
ATE85593.1 MF158037_p8 HNH homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 8171 8674
ATE85622.1 MF158037_p37 hypothetical protein phrog_355 nucleoside 2-deoxyribosyltransferase DNA, RNA and nucleotide metabolism -1 23870 24193
ATE85595.1 MF158037_p10 hypothetical protein phrog_3127 unknown function unknown function -1 8965 9621
ATE85592.1 MF158037_p7 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 6910 8187
ATE85638.1 MF158037_p53 hypothetical protein phrog_34162 unknown function unknown function -1 33110 33394
ATE85594.1 MF158037_p9 hypothetical protein phrog_4965 unknown function unknown function -1 8674 8916
ATE85645.1 MF158037_p60 tail fiber protein phrog_469 tail protein tail 1 37892 40378
ATE85627.1 MF158037_p42 hypothetical protein phrog_206 head scaffolding protein head and packaging 1 26945 27619
ATE85635.1 MF158037_p50 tail protein phrog_169 tail completion or Neck1 protein connector 1 31104 31502
ATE85640.1 MF158037_p55 hypothetical protein phrog_4557 unknown function unknown function 1 34145 34339
ATE85634.1 MF158037_p49 hypothetical protein phrog_161 head closure Hc1 connector 1 30748 31107
ATE85606.1 MF158037_p21 hypothetical protein phrog_2359 holin lysis 1 15662 15943