| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF158038 |
Definition |
Shigella phage Sf11, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Drexlerviridae; Tunavirinae; Tunavirus; Shigella virus Sfin1. |
DB of origin |
NUCCORE |
Length |
46454 |
Host Name |
Shigella flexneri |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
80 |
%GC |
45.98 |
Number of singletons |
6 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATE85648.1 | MF158038_p1 | hypothetical protein | phrog_28700 | unknown function | unknown function | 1 | 267 | 482 |
| ATE85711.1 | MF158038_p64 | hypothetical protein | phrog_25285 | unknown function | unknown function | -1 | 39658 | 39906 |
| ATE85710.1 | MF158038_p63 | hypothetical protein | phrog_146 | portal protein | head and packaging | -1 | 38197 | 39609 |
| ATE85682.1 | MF158038_p35 | hypothetical protein | phrog_4439 | unknown function | unknown function | 1 | 24744 | 24917 |
| ATE85649.1 | MF158038_p2 | DNA primase/polymerase | phrog_3022 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 479 | 2812 |
| ATE85687.1 | MF158038_p40 | capsid decoration protein | phrog_766 | head decoration | head and packaging | -1 | 27688 | 28155 |
| ATE85707.1 | MF158038_p60 | HNH homing endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 35749 | 36234 |
| ATE85683.1 | MF158038_p36 | DNA polymerase | phrog_3007 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 24917 | 25453 |
| ATE85671.1 | MF158038_p24 | neck whiskers protein | phrog_853 | major tail protein | tail | -1 | 19304 | 20020 |
| ATE85726.1 | MF158038_p79 | hypothetical protein | phrog_35977 | unknown function | unknown function | -1 | 45494 | 45589 |
| ATE85688.1 | MF158038_p41 | hypothetical protein | phrog_760 | unknown function | unknown function | -1 | 28155 | 29567 |
| ATE85650.1 | MF158038_p3 | hypothetical protein | phrog_33005 | unknown function | unknown function | 1 | 2809 | 3231 |
| ATE85659.1 | MF158038_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8573 | 8755 |
| ATE85693.1 | MF158038_p46 | winged helix-turn-helix domain-containing protein | phrog_1687 | MarR family transcrition regulator | transcription regulation | -1 | 30707 | 31405 |
| ATE85715.1 | MF158038_p68 | hypothetical protein | phrog_13301 | unknown function | unknown function | -1 | 40435 | 40641 |
| ATE85684.1 | MF158038_p37 | hypothetical protein | phrog_5335 | unknown function | unknown function | -1 | 25487 | 26335 |
| ATE85720.1 | MF158038_p73 | hypothetical protein | phrog_18384 | unknown function | unknown function | -1 | 43993 | 44166 |
| ATE85696.1 | MF158038_p49 | hypothetical protein | phrog_14963 | unknown function | unknown function | 1 | 32006 | 32176 |
| ATE85686.1 | MF158038_p39 | major capsid protein | phrog_771 | virion structural protein | head and packaging | -1 | 26615 | 27685 |
| ATE85708.1 | MF158038_p61 | hypothetical protein | phrog_7798 | unknown function | unknown function | 1 | 36221 | 37060 |
| ATE85700.1 | MF158038_p53 | hypothetical protein | phrog_1158 | tail assembly chaperone | tail | -1 | 33244 | 33585 |
| ATE85695.1 | MF158038_p48 | hypothetical protein | phrog_37091 | unknown function | unknown function | -1 | 31685 | 31882 |
| ATE85689.1 | MF158038_p42 | hypothetical protein | phrog_18423 | unknown function | unknown function | -1 | 29762 | 29908 |
| ATE85681.1 | MF158038_p34 | hypothetical protein | phrog_2358 | unknown function | unknown function | 1 | 24541 | 24744 |
| ATE85713.1 | MF158038_p66 | hypothetical protein | phrog_26739 | unknown function | unknown function | -1 | 40078 | 40263 |
| ATE85699.1 | MF158038_p52 | hypothetical protein | phrog_1312 | unknown function | unknown function | 1 | 33121 | 33216 |
| ATE85716.1 | MF158038_p69 | hypothetical protein | phrog_10141 | unknown function | unknown function | 1 | 40809 | 41369 |
| ATE85724.1 | MF158038_p77 | hypothetical protein | phrog_10786 | unknown function | unknown function | -1 | 44953 | 45186 |
| ATE85654.1 | MF158038_p7 | recA-like NTPase | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 4392 | 5222 |
| ATE85719.1 | MF158038_p72 | hypothetical protein | phrog_9747 | unknown function | unknown function | -1 | 43433 | 43876 |
| ATE85727.1 | MF158038_p80 | hypothetical protein | phrog_2180 | unknown function | unknown function | -1 | 45586 | 45732 |
| ATE85663.1 | MF158038_p16 | hypothetical protein | phrog_396 | minor tail protein | tail | -1 | 13394 | 13864 |
| ATE85722.1 | MF158038_p75 | hypothetical protein | phrog_29890 | unknown function | unknown function | -1 | 44429 | 44626 |
| ATE85690.1 | MF158038_p43 | hypothetical protein | phrog_14549 | unknown function | unknown function | -1 | 29905 | 30231 |
| ATE85725.1 | MF158038_p78 | hypothetical protein | phrog_16924 | unknown function | unknown function | -1 | 45223 | 45405 |
| ATE85709.1 | MF158038_p62 | head morphogenesis protein | phrog_758 | head morphogenesis | head and packaging | -1 | 37266 | 38216 |
| ATE85723.1 | MF158038_p76 | hypothetical protein | phrog_292 | unknown function | unknown function | -1 | 44690 | 44956 |
| ATE85714.1 | MF158038_p67 | hypothetical protein | phrog_13627 | unknown function | unknown function | -1 | 40263 | 40430 |
| ATE85653.1 | MF158038_p6 | lambda repressor-like transcriptional regulator | phrog_35 | transcriptional repressor | transcription regulation | -1 | 4003 | 4245 |
| ATE85660.1 | MF158038_p13 | tail protein | phrog_17420 | tail protein | tail | -1 | 8739 | 10496 |
| ATE85705.1 | MF158038_p58 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35193 | 35459 |
| ATE85712.1 | MF158038_p65 | hypothetical protein | singleton | unknown function | unknown function | -1 | 39917 | 40078 |
| ATE85662.1 | MF158038_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13201 | 13377 |
| ATE85655.1 | MF158038_p8 | hypothetical protein | phrog_253 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 5191 | 5670 |
| ATE85669.1 | MF158038_p22 | hypothetical protein | phrog_17424 | unknown function | unknown function | 1 | 18933 | 19076 |
| ATE85702.1 | MF158038_p55 | holin | phrog_13249 | holin | lysis | -1 | 34055 | 34294 |
| ATE85717.1 | MF158038_p70 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | -1 | 41401 | 42825 |
| ATE85667.1 | MF158038_p20 | hypothetical protein | phrog_2315 | unknown function | unknown function | 1 | 18416 | 18709 |
| ATE85661.1 | MF158038_p14 | tail protein | phrog_469 | tail protein | tail | -1 | 10536 | 13022 |
| ATE85664.1 | MF158038_p17 | hypothetical protein | phrog_11600 | unknown function | unknown function | -1 | 13880 | 15253 |
| ATE85675.1 | MF158038_p28 | hypothetical protein | phrog_797 | unknown function | unknown function | -1 | 21714 | 22061 |
| ATE85698.1 | MF158038_p51 | hypothetical protein | phrog_16624 | unknown function | unknown function | 1 | 32781 | 33089 |
| ATE85651.1 | MF158038_p4 | eaa protein | phrog_2814 | unknown function | unknown function | 1 | 3438 | 3695 |
| ATE85652.1 | MF158038_p5 | RNA-binding protein | phrog_625 | unknown function | unknown function | 1 | 3695 | 3976 |
| ATE85701.1 | MF158038_p54 | endopeptidase | phrog_312 | Rz-like spanin | lysis | -1 | 33586 | 34074 |
| ATE85658.1 | MF158038_p11 | type III restriction endonuclease | phrog_824 | unknown function | unknown function | 1 | 8128 | 8583 |
| ATE85680.1 | MF158038_p33 | transcriptional regulator | phrog_1033 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 23732 | 24541 |
| ATE85657.1 | MF158038_p10 | helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 6221 | 8131 |
| ATE85670.1 | MF158038_p23 | hypothetical protein | phrog_924 | unknown function | unknown function | 1 | 19073 | 19273 |
| ATE85721.1 | MF158038_p74 | hypothetical protein | phrog_5407 | unknown function | unknown function | -1 | 44153 | 44374 |
| ATE85678.1 | MF158038_p31 | hypothetical protein | phrog_14688 | lipoprotein | other | -1 | 22742 | 23182 |
| ATE85677.1 | MF158038_p30 | hypothetical protein | phrog_13738 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 22425 | 22709 |
| ATE85672.1 | MF158038_p25 | hypothetical protein | phrog_35112 | unknown function | unknown function | 1 | 20743 | 20919 |
| ATE85679.1 | MF158038_p32 | hypothetical protein | phrog_1273 | unknown function | unknown function | 1 | 23400 | 23735 |
| ATE85673.1 | MF158038_p26 | hypothetical protein | phrog_782 | unknown function | unknown function | -1 | 20945 | 21319 |
| ATE85656.1 | MF158038_p9 | hypothetical protein | phrog_9002 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 5688 | 6209 |
| ATE85697.1 | MF158038_p50 | hypothetical protein | phrog_17775 | unknown function | unknown function | 1 | 32173 | 32781 |
| ATE85691.1 | MF158038_p44 | hypothetical protein | phrog_343 | unknown function | unknown function | -1 | 30228 | 30581 |
| ATE85692.1 | MF158038_p45 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30565 | 30687 |
| ATE85704.1 | MF158038_p57 | lysozyme-like domain-containing protein | phrog_10457 | endolysin | lysis | -1 | 34745 | 35023 |
| ATE85666.1 | MF158038_p19 | hypothetical protein | phrog_791 | unknown function | unknown function | -1 | 17595 | 18311 |
| ATE85668.1 | MF158038_p21 | superinfection exclusion protein | phrog_1039 | immunity to superinfection | moron, auxiliary metabolic gene and host takeover | 1 | 18742 | 18936 |
| ATE85706.1 | MF158038_p59 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35456 | 35752 |
| ATE85718.1 | MF158038_p71 | DNA-binding domain-containing protein | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 42818 | 43348 |
| ATE85676.1 | MF158038_p29 | hypothetical protein | phrog_786 | unknown function | unknown function | -1 | 22052 | 22444 |
| ATE85685.1 | MF158038_p38 | hypothetical protein | phrog_2138 | unknown function | unknown function | -1 | 26376 | 26573 |
| ATE85674.1 | MF158038_p27 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | -1 | 21316 | 21714 |
| ATE85703.1 | MF158038_p56 | lysozyme | phrog_90 | endolysin | lysis | -1 | 34291 | 34755 |
| ATE85665.1 | MF158038_p18 | tail tape measure protein | phrog_1538 | tail length tape measure protein | tail | -1 | 15253 | 17595 |
| ATE85694.1 | MF158038_p47 | hypothetical protein | phrog_15697 | unknown function | unknown function | -1 | 31430 | 31624 |