Genomic map of Shigella phage Sf11 (MF158038)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MF158038
Definition
Shigella phage Sf11, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Drexlerviridae; Tunavirinae; Tunavirus; Shigella virus Sfin1.
DB of origin
NUCCORE
Length
46454
Host Name
Shigella flexneri
Host domain
Bacteria
Is prophage?
undef
Number of proteins
80
%GC
45.98
Number of singletons
6
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ATE85648.1 MF158038_p1 hypothetical protein phrog_28700 unknown function unknown function 1 267 482
ATE85711.1 MF158038_p64 hypothetical protein phrog_25285 unknown function unknown function -1 39658 39906
ATE85710.1 MF158038_p63 hypothetical protein phrog_146 portal protein head and packaging -1 38197 39609
ATE85682.1 MF158038_p35 hypothetical protein phrog_4439 unknown function unknown function 1 24744 24917
ATE85649.1 MF158038_p2 DNA primase/polymerase phrog_3022 DNA primase DNA, RNA and nucleotide metabolism 1 479 2812
ATE85687.1 MF158038_p40 capsid decoration protein phrog_766 head decoration head and packaging -1 27688 28155
ATE85707.1 MF158038_p60 HNH homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 35749 36234
ATE85683.1 MF158038_p36 DNA polymerase phrog_3007 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 24917 25453
ATE85671.1 MF158038_p24 neck whiskers protein phrog_853 major tail protein tail -1 19304 20020
ATE85726.1 MF158038_p79 hypothetical protein phrog_35977 unknown function unknown function -1 45494 45589
ATE85688.1 MF158038_p41 hypothetical protein phrog_760 unknown function unknown function -1 28155 29567
ATE85650.1 MF158038_p3 hypothetical protein phrog_33005 unknown function unknown function 1 2809 3231
ATE85659.1 MF158038_p12 hypothetical protein singleton unknown function unknown function 1 8573 8755
ATE85693.1 MF158038_p46 winged helix-turn-helix domain-containing protein phrog_1687 MarR family transcrition regulator transcription regulation -1 30707 31405
ATE85715.1 MF158038_p68 hypothetical protein phrog_13301 unknown function unknown function -1 40435 40641
ATE85684.1 MF158038_p37 hypothetical protein phrog_5335 unknown function unknown function -1 25487 26335
ATE85720.1 MF158038_p73 hypothetical protein phrog_18384 unknown function unknown function -1 43993 44166
ATE85696.1 MF158038_p49 hypothetical protein phrog_14963 unknown function unknown function 1 32006 32176
ATE85686.1 MF158038_p39 major capsid protein phrog_771 virion structural protein head and packaging -1 26615 27685
ATE85708.1 MF158038_p61 hypothetical protein phrog_7798 unknown function unknown function 1 36221 37060
ATE85700.1 MF158038_p53 hypothetical protein phrog_1158 tail assembly chaperone tail -1 33244 33585
ATE85695.1 MF158038_p48 hypothetical protein phrog_37091 unknown function unknown function -1 31685 31882
ATE85689.1 MF158038_p42 hypothetical protein phrog_18423 unknown function unknown function -1 29762 29908
ATE85681.1 MF158038_p34 hypothetical protein phrog_2358 unknown function unknown function 1 24541 24744
ATE85713.1 MF158038_p66 hypothetical protein phrog_26739 unknown function unknown function -1 40078 40263
ATE85699.1 MF158038_p52 hypothetical protein phrog_1312 unknown function unknown function 1 33121 33216
ATE85716.1 MF158038_p69 hypothetical protein phrog_10141 unknown function unknown function 1 40809 41369
ATE85724.1 MF158038_p77 hypothetical protein phrog_10786 unknown function unknown function -1 44953 45186
ATE85654.1 MF158038_p7 recA-like NTPase phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 4392 5222
ATE85719.1 MF158038_p72 hypothetical protein phrog_9747 unknown function unknown function -1 43433 43876
ATE85727.1 MF158038_p80 hypothetical protein phrog_2180 unknown function unknown function -1 45586 45732
ATE85663.1 MF158038_p16 hypothetical protein phrog_396 minor tail protein tail -1 13394 13864
ATE85722.1 MF158038_p75 hypothetical protein phrog_29890 unknown function unknown function -1 44429 44626
ATE85690.1 MF158038_p43 hypothetical protein phrog_14549 unknown function unknown function -1 29905 30231
ATE85725.1 MF158038_p78 hypothetical protein phrog_16924 unknown function unknown function -1 45223 45405
ATE85709.1 MF158038_p62 head morphogenesis protein phrog_758 head morphogenesis head and packaging -1 37266 38216
ATE85723.1 MF158038_p76 hypothetical protein phrog_292 unknown function unknown function -1 44690 44956
ATE85714.1 MF158038_p67 hypothetical protein phrog_13627 unknown function unknown function -1 40263 40430
ATE85653.1 MF158038_p6 lambda repressor-like transcriptional regulator phrog_35 transcriptional repressor transcription regulation -1 4003 4245
ATE85660.1 MF158038_p13 tail protein phrog_17420 tail protein tail -1 8739 10496
ATE85705.1 MF158038_p58 hypothetical protein singleton unknown function unknown function 1 35193 35459
ATE85712.1 MF158038_p65 hypothetical protein singleton unknown function unknown function -1 39917 40078
ATE85662.1 MF158038_p15 hypothetical protein singleton unknown function unknown function 1 13201 13377
ATE85655.1 MF158038_p8 hypothetical protein phrog_253 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 5191 5670
ATE85669.1 MF158038_p22 hypothetical protein phrog_17424 unknown function unknown function 1 18933 19076
ATE85702.1 MF158038_p55 holin phrog_13249 holin lysis -1 34055 34294
ATE85717.1 MF158038_p70 terminase large subunit phrog_2 terminase large subunit head and packaging -1 41401 42825
ATE85667.1 MF158038_p20 hypothetical protein phrog_2315 unknown function unknown function 1 18416 18709
ATE85661.1 MF158038_p14 tail protein phrog_469 tail protein tail -1 10536 13022
ATE85664.1 MF158038_p17 hypothetical protein phrog_11600 unknown function unknown function -1 13880 15253
ATE85675.1 MF158038_p28 hypothetical protein phrog_797 unknown function unknown function -1 21714 22061
ATE85698.1 MF158038_p51 hypothetical protein phrog_16624 unknown function unknown function 1 32781 33089
ATE85651.1 MF158038_p4 eaa protein phrog_2814 unknown function unknown function 1 3438 3695
ATE85652.1 MF158038_p5 RNA-binding protein phrog_625 unknown function unknown function 1 3695 3976
ATE85701.1 MF158038_p54 endopeptidase phrog_312 Rz-like spanin lysis -1 33586 34074
ATE85658.1 MF158038_p11 type III restriction endonuclease phrog_824 unknown function unknown function 1 8128 8583
ATE85680.1 MF158038_p33 transcriptional regulator phrog_1033 ParB-like partition protein DNA, RNA and nucleotide metabolism 1 23732 24541
ATE85657.1 MF158038_p10 helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 6221 8131
ATE85670.1 MF158038_p23 hypothetical protein phrog_924 unknown function unknown function 1 19073 19273
ATE85721.1 MF158038_p74 hypothetical protein phrog_5407 unknown function unknown function -1 44153 44374
ATE85678.1 MF158038_p31 hypothetical protein phrog_14688 lipoprotein other -1 22742 23182
ATE85677.1 MF158038_p30 hypothetical protein phrog_13738 membrane protein moron, auxiliary metabolic gene and host takeover -1 22425 22709
ATE85672.1 MF158038_p25 hypothetical protein phrog_35112 unknown function unknown function 1 20743 20919
ATE85679.1 MF158038_p32 hypothetical protein phrog_1273 unknown function unknown function 1 23400 23735
ATE85673.1 MF158038_p26 hypothetical protein phrog_782 unknown function unknown function -1 20945 21319
ATE85656.1 MF158038_p9 hypothetical protein phrog_9002 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 5688 6209
ATE85697.1 MF158038_p50 hypothetical protein phrog_17775 unknown function unknown function 1 32173 32781
ATE85691.1 MF158038_p44 hypothetical protein phrog_343 unknown function unknown function -1 30228 30581
ATE85692.1 MF158038_p45 hypothetical protein singleton unknown function unknown function -1 30565 30687
ATE85704.1 MF158038_p57 lysozyme-like domain-containing protein phrog_10457 endolysin lysis -1 34745 35023
ATE85666.1 MF158038_p19 hypothetical protein phrog_791 unknown function unknown function -1 17595 18311
ATE85668.1 MF158038_p21 superinfection exclusion protein phrog_1039 immunity to superinfection moron, auxiliary metabolic gene and host takeover 1 18742 18936
ATE85706.1 MF158038_p59 hypothetical protein singleton unknown function unknown function 1 35456 35752
ATE85718.1 MF158038_p71 DNA-binding domain-containing protein phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 42818 43348
ATE85676.1 MF158038_p29 hypothetical protein phrog_786 unknown function unknown function -1 22052 22444
ATE85685.1 MF158038_p38 hypothetical protein phrog_2138 unknown function unknown function -1 26376 26573
ATE85674.1 MF158038_p27 hypothetical protein phrog_5 tail completion or Neck1 protein connector -1 21316 21714
ATE85703.1 MF158038_p56 lysozyme phrog_90 endolysin lysis -1 34291 34755
ATE85665.1 MF158038_p18 tail tape measure protein phrog_1538 tail length tape measure protein tail -1 15253 17595
ATE85694.1 MF158038_p47 hypothetical protein phrog_15697 unknown function unknown function -1 31430 31624