Genomic map of Shigella phage Sf12 (MF158039)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MF158039
Definition
Shigella phage Sf12, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Drexlerviridae; Rogunavirinae; Eastlansingvirus; Shigella virus Sf12.
DB of origin
NUCCORE
Length
47647
Host Name
Shigella flexneri
Host domain
Bacteria
Is prophage?
undef
Number of proteins
74
%GC
44.32
Number of singletons
9
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ATE85755.1 MF158039_p28 recombination protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 14888 15538
ATE85752.1 MF158039_p25 DNA primase phrog_510 DNA primase DNA, RNA and nucleotide metabolism 1 12082 13005
ATE85799.1 MF158039_p72 hypothetical protein phrog_8335 unknown function unknown function -1 45658 45894
ATE85778.1 MF158039_p51 hypothetical protein phrog_169 tail completion or Neck1 protein connector -1 32064 32492
ATE85745.1 MF158039_p18 hypothetical protein phrog_2510 unknown function unknown function -1 7850 8140
ATE85773.1 MF158039_p46 tail tape measure protein phrog_24 tail length tape measure protein tail -1 27530 30271
ATE85737.1 MF158039_p10 hypothetical protein phrog_4788 unknown function unknown function -1 4613 4786
ATE85798.1 MF158039_p71 hypothetical protein singleton unknown function unknown function -1 45511 45648
ATE85766.1 MF158039_p39 tail assembly protein phrog_32 tail assembly protein tail -1 24199 24765
ATE85747.1 MF158039_p20 hypothetical protein phrog_3249 unknown function unknown function -1 8371 8571
ATE85794.1 MF158039_p67 hypothetical protein singleton unknown function unknown function -1 44804 44998
ATE85754.1 MF158039_p27 single-stranded DNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 14415 14840
ATE85772.1 MF158039_p45 minor tail protein phrog_14 minor tail protein tail -1 27148 27498
ATE85765.1 MF158039_p38 tail fiber protein phrog_31 central tail fiber J tail -1 20762 24157
ATE85728.1 MF158039_p1 hypothetical protein phrog_5684 unknown function unknown function 1 371 589
ATE85784.1 MF158039_p57 hypothetical protein phrog_9703 head decoration head and packaging -1 36238 37530
ATE85788.1 MF158039_p61 portal protein phrog_146 portal protein head and packaging -1 39759 41036
ATE85781.1 MF158039_p54 hypothetical protein phrog_2716 unknown function unknown function -1 33296 33598
ATE85771.1 MF158039_p44 hypothetical protein phrog_24631 unknown function unknown function -1 26861 27055
ATE85801.1 MF158039_p74 hypothetical protein phrog_4841 unknown function unknown function -1 46602 47087
ATE85761.1 MF158039_p34 superinfection exclusion protein phrog_1119 Cor superinfection exclusion protein moron, auxiliary metabolic gene and host takeover 1 18939 19160
ATE85730.1 MF158039_p3 hypothetical protein phrog_4548 unknown function unknown function 1 826 978
ATE85762.1 MF158039_p35 hypothetical protein singleton unknown function unknown function -1 19186 19716
ATE85734.1 MF158039_p7 Rz1 protein phrog_1804 Rz-like spanin lysis -1 3415 3819
ATE85777.1 MF158039_p50 tail protein phrog_179 tail terminator connector -1 31676 32062
ATE85774.1 MF158039_p47 tape measure chaperone phrog_680 tail length tape measure protein tail -1 30306 30560
ATE85759.1 MF158039_p32 hypothetical protein singleton unknown function unknown function -1 17347 17949
ATE85749.1 MF158039_p22 HNH homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 9020 9544
ATE85775.1 MF158039_p48 tape measure chaperone phrog_569 tail length tape measure protein tail -1 30623 30937
ATE85756.1 MF158039_p29 endodeoxyribonuclease VIII phrog_412 exonuclease VIII DNA, RNA and nucleotide metabolism -1 15593 16558
ATE85733.1 MF158039_p6 hypothetical protein phrog_2794 unknown function unknown function 1 3066 3401
ATE85769.1 MF158039_p42 HNH homing endonuclease singleton unknown function unknown function -1 25675 25971
ATE85783.1 MF158039_p56 DNA polymerase phrog_5073 tail fiber protein tail -1 34681 36156
ATE85782.1 MF158039_p55 major capsid protein phrog_264 major head protein head and packaging -1 33634 34593
ATE85786.1 MF158039_p59 hypothetical protein phrog_1989 unknown function unknown function -1 38175 38648
ATE85764.1 MF158039_p37 hypothetical protein phrog_557 outer membrane protein other -1 20409 20714
ATE85795.1 MF158039_p68 hypothetical protein phrog_2452 unknown function unknown function -1 45014 45262
ATE85793.1 MF158039_p66 HNH homing endonuclease phrog_4578 HNH endonuclease DNA, RNA and nucleotide metabolism -1 44344 44652
ATE85791.1 MF158039_p64 hypothetical protein phrog_2919 unknown function unknown function -1 43266 43415
ATE85779.1 MF158039_p52 hypothetical protein phrog_161 head closure Hc1 connector -1 32485 32853
ATE85741.1 MF158039_p14 hypothetical protein phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism -1 5746 6876
ATE85760.1 MF158039_p33 hypothetical protein singleton unknown function unknown function -1 17950 18321
ATE85731.1 MF158039_p4 hypothetical protein phrog_2684 unknown function unknown function 1 1048 1401
ATE85738.1 MF158039_p11 hypothetical protein phrog_10052 unknown function unknown function -1 4799 4987
ATE85763.1 MF158039_p36 hypothetical protein phrog_425 membrane associated protein moron, auxiliary metabolic gene and host takeover -1 19726 20409
ATE85740.1 MF158039_p13 HNH homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 5245 5703
ATE85750.1 MF158039_p23 DNA helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 9519 11462
ATE85790.1 MF158039_p63 terminase small subunit phrog_606 terminase small subunit head and packaging -1 42651 43166
ATE85751.1 MF158039_p24 lambda repressor-like DNA binding protein phrog_2856 transcriptional regulator transcription regulation 1 11547 12029
ATE85787.1 MF158039_p60 prohead protease phrog_530 head maturation protease head and packaging -1 38660 39769
ATE85753.1 MF158039_p26 winged helix-turn-helix DNA-binding domain-containing protein phrog_1980 tail fiber protein tail 1 13084 14280
ATE85785.1 MF158039_p58 hypothetical protein singleton unknown function unknown function -1 37613 38137
ATE85732.1 MF158039_p5 hypothetical protein phrog_2373 DNA helicase DNA, RNA and nucleotide metabolism 1 1479 3062
ATE85792.1 MF158039_p65 fusion protein phrog_303 unknown function unknown function -1 43796 44035
ATE85743.1 MF158039_p15 hypothetical protein phrog_4596 unknown function unknown function -1 7235 7492
ATE85758.1 MF158039_p31 hypothetical protein phrog_5247 unknown function unknown function -1 17082 17276
ATE85739.1 MF158039_p12 hypothetical protein phrog_7411 unknown function unknown function -1 4987 5238
ATE85796.1 MF158039_p69 hypothetical protein phrog_29823 unknown function unknown function -1 45249 45392
ATE85767.1 MF158039_p40 minor tail protein phrog_30 minor tail protein tail -1 24746 25504
ATE85735.1 MF158039_p8 lysozyme phrog_7 endolysin lysis -1 3801 4283
ATE85744.1 MF158039_p17 hypothetical protein singleton unknown function unknown function -1 7725 7850
ATE85770.1 MF158039_p43 minor tail protein phrog_18 minor tail protein tail -1 26039 26806
ATE85789.1 MF158039_p62 terminase large subunit phrog_38 terminase large subunit head and packaging -1 41086 42654
ATE85729.1 MF158039_p2 hypothetical protein phrog_4448 unknown function unknown function 1 586 825
ATE85746.1 MF158039_p19 hypothetical protein phrog_2676 unknown function unknown function -1 8140 8367
ATE85768.1 MF158039_p41 transcription factor singleton unknown function unknown function -1 25494 25688
ATE85742.1 MF158039_p16 hypothetical protein phrog_2817 unknown function unknown function -1 7489 7728
ATE85748.1 MF158039_p21 VRR-NUC domain-containing protein phrog_824 unknown function unknown function -1 8638 9030
ATE85800.1 MF158039_p73 hypothetical protein phrog_7327 unknown function unknown function -1 46060 46605
ATE85776.1 MF158039_p49 major tail protein phrog_584 major tail protein tail -1 31011 31661
ATE85797.1 MF158039_p70 hypothetical protein phrog_12148 unknown function unknown function -1 45389 45514
ATE85736.1 MF158039_p9 holin phrog_2877 holin lysis -1 4283 4498
ATE85780.1 MF158039_p53 hypothetical protein phrog_302 virion structural protein head and packaging -1 32850 33251
ATE85757.1 MF158039_p30 HNH homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 16530 17078