Genomic map of Shigella phage Sf13 (MF158040)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MF158040
Definition
Shigella phage Sf13, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Ounavirinae; Mooglevirus; Shigella virus Sf13.
DB of origin
NUCCORE
Length
87570
Host Name
Shigella flexneri
Host domain
Bacteria
Is prophage?
undef
Number of proteins
132
%GC
38.91
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ATE85885.1 MF158040_p84 glutaredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 52457 52699
ATE85851.1 MF158040_p50 hypothetical protein phrog_4375 unknown function unknown function -1 32922 33269
ATE85869.1 MF158040_p68 rIIB protein phrog_609 RIIB lysis inhibitor lysis -1 40111 41232
ATE85895.1 MF158040_p94 hypothetical protein phrog_3877 unknown function unknown function -1 59586 60446
ATE85831.1 MF158040_p30 hypothetical protein phrog_5380 unknown function unknown function 1 23464 24204
ATE85900.1 MF158040_p99 deoxynucleotide monophosphate kinase phrog_139 deoxynucleoside monophosphate kinase other -1 63107 63847
ATE85828.1 MF158040_p27 hypothetical protein phrog_4385 unknown function unknown function 1 22168 22461
ATE85835.1 MF158040_p34 hypothetical protein phrog_4457 unknown function unknown function 1 24993 25202
ATE85839.1 MF158040_p38 hypothetical protein phrog_4559 unknown function unknown function -1 28236 28487
ATE85836.1 MF158040_p35 hypothetical protein phrog_9967 unknown function unknown function 1 25244 25540
ATE85841.1 MF158040_p40 hypothetical protein phrog_4725 unknown function unknown function -1 28878 29405
ATE85803.1 MF158040_p2 hypothetical protein phrog_280 virion structural protein head and packaging -1 673 1119
ATE85908.1 MF158040_p107 hypothetical protein phrog_902 unknown function unknown function 1 69353 69598
ATE85838.1 MF158040_p37 hypothetical protein phrog_4330 unknown function unknown function 1 25964 26629
ATE85918.1 MF158040_p117 dihydrofolate reductase phrog_316 dihydrofolate reductase DNA, RNA and nucleotide metabolism 1 73498 74043
ATE85820.1 MF158040_p19 hypothetical protein phrog_4114 unknown function unknown function -1 18005 18376
ATE85855.1 MF158040_p54 hypothetical protein phrog_4495 unknown function unknown function -1 34598 34978
ATE85844.1 MF158040_p43 hypothetical protein phrog_13570 unknown function unknown function -1 30235 30432
ATE85819.1 MF158040_p18 hypothetical protein phrog_850 RNA-binding protein DNA, RNA and nucleotide metabolism -1 16513 17928
ATE85928.1 MF158040_p127 baseplate protein phrog_11 baseplate spike tail -1 82282 82923
ATE85857.1 MF158040_p56 hypothetical protein phrog_5293 unknown function unknown function -1 35236 35442
ATE85917.1 MF158040_p116 hypothetical protein phrog_2993 unknown function unknown function 1 73229 73501
ATE85907.1 MF158040_p106 hypothetical protein phrog_9065 unknown function unknown function 1 69091 69342
ATE85930.1 MF158040_p129 hypothetical protein phrog_349 virion structural protein head and packaging -1 83897 84238
ATE85818.1 MF158040_p17 hypothetical protein phrog_10765 unknown function unknown function -1 13047 13259
ATE85904.1 MF158040_p103 HNH homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 68091 68618
ATE85898.1 MF158040_p97 DNA primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism -1 60919 62910
ATE85859.1 MF158040_p58 hypothetical protein phrog_335 phosphatase other -1 35947 36741
ATE85845.1 MF158040_p44 hypothetical protein phrog_10118 unknown function unknown function -1 30524 30823
ATE85816.1 MF158040_p15 hypothetical protein phrog_4397 unknown function unknown function -1 11230 11436
ATE85889.1 MF158040_p88 hypothetical protein phrog_3358 unknown function unknown function -1 56386 56721
ATE85811.1 MF158040_p10 prohead protease phrog_53 head maturation protease head and packaging -1 5938 7284
ATE85833.1 MF158040_p32 hypothetical protein phrog_4343 unknown function unknown function 1 24416 24922
ATE85808.1 MF158040_p7 hypothetical protein phrog_1732 unknown function unknown function -1 3941 4390
ATE85891.1 MF158040_p90 phosphoribosyl-ATP pyrophosphohydrolase-like protein phrog_2144 MazG-like pyrophosphatase other -1 57021 57776
ATE85905.1 MF158040_p104 hypothetical protein phrog_4230 unknown function unknown function 1 68670 68888
ATE85909.1 MF158040_p108 hypothetical protein phrog_4427 unknown function unknown function 1 69600 69806
ATE85822.1 MF158040_p21 hypothetical protein phrog_4034 unknown function unknown function 1 18994 19584
ATE85848.1 MF158040_p47 hypothetical protein phrog_9030 unknown function unknown function -1 31760 32008
ATE85868.1 MF158040_p67 hypothetical protein phrog_600 unknown function unknown function -1 39461 40009
ATE85925.1 MF158040_p124 hypothetical protein phrog_4017 baseplate protein tail -1 79537 80394
ATE85805.1 MF158040_p4 hypothetical protein phrog_4082 unknown function unknown function -1 2487 3086
ATE85870.1 MF158040_p69 rIIA protein phrog_612 RIIA lysis inhibitor lysis -1 41312 43684
ATE85873.1 MF158040_p72 nicotinamide phosphoribosyltransferase phrog_448 nicotinamide phosphoribosyl transferase other -1 44297 46114
ATE85910.1 MF158040_p109 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 69803 70903
ATE85829.1 MF158040_p28 hypothetical protein phrog_4040 unknown function unknown function 1 22454 22798
ATE85879.1 MF158040_p78 hypothetical protein phrog_5082 unknown function unknown function -1 48486 48806
ATE85846.1 MF158040_p45 hypothetical protein phrog_4640 unknown function unknown function -1 30824 31054
ATE85850.1 MF158040_p49 hypothetical protein phrog_3436 unknown function unknown function -1 32591 32863
ATE85864.1 MF158040_p63 o-spanin phrog_4180 unknown function unknown function -1 37749 37946
ATE85867.1 MF158040_p66 polynucleotide kinase phrog_3970 polynucleotide kinase other -1 38788 39483
ATE85916.1 MF158040_p115 hypothetical protein phrog_4422 unknown function unknown function 1 72711 73232
ATE85923.1 MF158040_p122 tail fiber protein phrog_2097 tail fiber protein tail -1 78060 79235
ATE85842.1 MF158040_p41 hypothetical protein phrog_7482 unknown function unknown function -1 29471 29611
ATE85840.1 MF158040_p39 hypothetical protein phrog_7022 unknown function unknown function -1 28554 28817
ATE85896.1 MF158040_p95 hypothetical protein phrog_4424 unknown function unknown function -1 60532 60669
ATE85866.1 MF158040_p65 hypothetical protein phrog_2267 unknown function unknown function -1 38312 38776
ATE85914.1 MF158040_p113 hypothetical protein phrog_4116 unknown function unknown function 1 71862 72221
ATE85858.1 MF158040_p57 hypothetical protein phrog_15689 unknown function unknown function 1 35664 35942
ATE85874.1 MF158040_p73 ribose-phosphate pyrophosphokinase phrog_619 ribose-phosphate pyrophosphokinase other -1 46159 47040
ATE85887.1 MF158040_p86 hypothetical protein phrog_2652 unknown function unknown function -1 53769 54098
ATE85830.1 MF158040_p29 hypothetical protein phrog_4109 unknown function unknown function 1 22800 23393
ATE85802.1 MF158040_p1 tape measure protein phrog_1613 tail assembly chaperone tail -1 195 596
ATE85813.1 MF158040_p12 hypothetical protein phrog_3977 unknown function unknown function -1 7628 8128
ATE85901.1 MF158040_p100 hypothetical protein phrog_4251 minor tail protein tail -1 63905 64699
ATE85906.1 MF158040_p105 hypothetical protein phrog_5180 unknown function unknown function 1 68885 69094
ATE85927.1 MF158040_p126 hypothetical protein phrog_120 baseplate wedge subunit tail -1 81866 82282
ATE85843.1 MF158040_p42 hypothetical protein phrog_4318 unknown function unknown function -1 29808 30149
ATE85921.1 MF158040_p120 hypothetical protein phrog_402 unknown function unknown function -1 75355 75549
ATE85872.1 MF158040_p71 hypothetical protein phrog_4262 unknown function unknown function -1 43908 44243
ATE85826.1 MF158040_p25 hypothetical protein phrog_4266 unknown function unknown function 1 21395 21793
ATE85809.1 MF158040_p8 major capsid protein phrog_29 major head protein head and packaging -1 4413 5516
ATE85854.1 MF158040_p53 hypothetical protein phrog_5089 unknown function unknown function -1 34249 34506
ATE85893.1 MF158040_p92 GIY-YIG homing endonuclease phrog_447 NAD synthetase other -1 57993 58493
ATE85902.1 MF158040_p101 hypothetical protein phrog_4039 unknown function unknown function -1 64683 65123
ATE85856.1 MF158040_p55 hypothetical protein phrog_14219 unknown function unknown function -1 35063 35224
ATE85903.1 MF158040_p102 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 65382 68081
ATE85863.1 MF158040_p62 hypothetical protein phrog_4391 unknown function unknown function -1 37483 37752
ATE85922.1 MF158040_p121 tail fiber protein phrog_4277 tail fiber protein tail -1 75636 78014
ATE85810.1 MF158040_p9 hypothetical protein phrog_4146 tail protease other -1 5548 5925
ATE85912.1 MF158040_p111 hypothetical protein phrog_4473 unknown function unknown function 1 71365 71568
ATE85913.1 MF158040_p112 lambda-like transcriptional regulator phrog_1373 transcriptional regulator transcription regulation 1 71561 71860
ATE85875.1 MF158040_p74 hypothetical protein phrog_4726 unknown function unknown function -1 47051 47329
ATE85847.1 MF158040_p46 hypothetical protein phrog_3303 unknown function unknown function -1 31118 31675
ATE85807.1 MF158040_p6 hypothetical protein phrog_222 tail completion or Neck1 protein connector -1 3459 3941
ATE85827.1 MF158040_p26 hypothetical protein phrog_4348 unknown function unknown function 1 21786 22166
ATE85920.1 MF158040_p119 holin phrog_4038 unknown function unknown function -1 74981 75355
ATE85911.1 MF158040_p110 hypothetical protein phrog_4332 unknown function unknown function 1 70989 71363
ATE85871.1 MF158040_p70 hypothetical protein phrog_3931 unknown function unknown function -1 43747 43926
ATE85877.1 MF158040_p76 HNH homing endonuclease phrog_4462 unknown function unknown function -1 47890 48201
ATE85823.1 MF158040_p22 hypothetical protein phrog_4463 unknown function unknown function 1 19628 19996
ATE85876.1 MF158040_p75 hypothetical protein phrog_3500 unknown function unknown function -1 47322 47837
ATE85853.1 MF158040_p52 hypothetical protein phrog_4190 unknown function unknown function -1 33644 34156
ATE85824.1 MF158040_p23 tail protein phrog_3995 tail protein tail 1 19993 20877
ATE85821.1 MF158040_p20 hypothetical protein phrog_5064 unknown function unknown function 1 18767 19000
ATE85861.1 MF158040_p60 hypothetical protein phrog_6082 unknown function unknown function -1 36936 37172
ATE85860.1 MF158040_p59 hypothetical protein phrog_2210 unknown function unknown function -1 36743 36943
ATE85814.1 MF158040_p13 hypothetical protein phrog_113 portal protein head and packaging -1 8128 9594
ATE85878.1 MF158040_p77 hypothetical protein phrog_4425 unknown function unknown function -1 48213 48470
ATE85883.1 MF158040_p82 anaerobic NTP reductase, large subunit phrog_487 NrdD-like anaerobic ribonucleotide reductase large subunit moron, auxiliary metabolic gene and host takeover -1 50070 52214
ATE85897.1 MF158040_p96 hypothetical protein phrog_4982 unknown function unknown function -1 60666 60944
ATE85862.1 MF158040_p61 hypothetical protein phrog_4453 unknown function unknown function -1 37147 37473
ATE85899.1 MF158040_p98 hypothetical protein phrog_4469 unknown function unknown function -1 62903 63103
ATE85815.1 MF158040_p14 terminase large subunit phrog_979 terminase large subunit head and packaging -1 9607 11208
ATE85832.1 MF158040_p31 hypothetical protein phrog_4459 unknown function unknown function 1 24201 24419
ATE85881.1 MF158040_p80 hypothetical protein phrog_4382 unknown function unknown function -1 49254 49646
ATE85884.1 MF158040_p83 hypothetical protein phrog_4532 unknown function unknown function -1 52264 52464
ATE85890.1 MF158040_p89 hypothetical protein phrog_4007 unknown function unknown function -1 56714 57040
ATE85852.1 MF158040_p51 hypothetical protein phrog_4401 unknown function unknown function -1 33263 33559
ATE85882.1 MF158040_p81 hypothetical protein phrog_8826 unknown function unknown function -1 49743 50000
ATE85924.1 MF158040_p123 hypothetical protein phrog_4141 unknown function unknown function -1 79238 79537
ATE85919.1 MF158040_p118 thymidylate synthase phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism 1 74045 74944
ATE85933.1 MF158040_p132 tail tape measure chaperone phrog_4963 tail assembly chaperone tail -1 87281 87508
ATE85837.1 MF158040_p36 hypothetical protein phrog_4713 unknown function unknown function 1 25527 25961
ATE85849.1 MF158040_p48 hypothetical protein phrog_4327 unknown function unknown function -1 32094 32501
ATE85915.1 MF158040_p114 hypothetical protein phrog_9143 unknown function unknown function 1 72206 72709
ATE85825.1 MF158040_p24 lysozyme phrog_7 endolysin lysis 1 20880 21344
ATE85834.1 MF158040_p33 hypothetical protein phrog_6279 unknown function unknown function 1 24904 24996
ATE85926.1 MF158040_p125 baseplate assembly protein phrog_6 baseplate wedge subunit tail -1 80397 81866
ATE85817.1 MF158040_p16 hypothetical protein phrog_2114 unknown function unknown function -1 11832 12566
ATE85929.1 MF158040_p128 hypothetical protein phrog_196 baseplate hub tail -1 82920 83897
ATE85812.1 MF158040_p11 hypothetical protein phrog_240 head protein head and packaging -1 7296 7628
ATE85932.1 MF158040_p131 tail tape measure protein phrog_4036 tail length tape measure protein tail -1 85044 87281
ATE85931.1 MF158040_p130 hypothetical protein phrog_3721 unknown function unknown function -1 84238 85044
ATE85886.1 MF158040_p85 ribonucleoside triphosphate reductase, small subunit phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism -1 52699 53772
ATE85892.1 MF158040_p91 hypothetical protein phrog_4442 unknown function unknown function -1 57776 57991
ATE85865.1 MF158040_p64 i-spanin phrog_1152 Rz-like spanin lysis -1 37912 38259
ATE85894.1 MF158040_p93 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism -1 58483 59523
ATE85880.1 MF158040_p79 anaerobic NTP reductase, small subunit phrog_626 anaerobic ribonucleotide reductase small subunit DNA, RNA and nucleotide metabolism -1 48769 49254
ATE85804.1 MF158040_p3 hypothetical protein phrog_205 tail sheath tail -1 1134 2486
ATE85888.1 MF158040_p87 ribonucleoside triphosphate reductase, large subunit phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism -1 54100 56334
ATE85806.1 MF158040_p5 hypothetical protein phrog_2874 unknown function unknown function -1 3061 3462