| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF158040 |
Definition |
Shigella phage Sf13, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Ounavirinae; Mooglevirus; Shigella virus Sf13. |
DB of origin |
NUCCORE |
Length |
87570 |
Host Name |
Shigella flexneri |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
132 |
%GC |
38.91 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATE85885.1 | MF158040_p84 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 52457 | 52699 |
| ATE85851.1 | MF158040_p50 | hypothetical protein | phrog_4375 | unknown function | unknown function | -1 | 32922 | 33269 |
| ATE85869.1 | MF158040_p68 | rIIB protein | phrog_609 | RIIB lysis inhibitor | lysis | -1 | 40111 | 41232 |
| ATE85895.1 | MF158040_p94 | hypothetical protein | phrog_3877 | unknown function | unknown function | -1 | 59586 | 60446 |
| ATE85831.1 | MF158040_p30 | hypothetical protein | phrog_5380 | unknown function | unknown function | 1 | 23464 | 24204 |
| ATE85900.1 | MF158040_p99 | deoxynucleotide monophosphate kinase | phrog_139 | deoxynucleoside monophosphate kinase | other | -1 | 63107 | 63847 |
| ATE85828.1 | MF158040_p27 | hypothetical protein | phrog_4385 | unknown function | unknown function | 1 | 22168 | 22461 |
| ATE85835.1 | MF158040_p34 | hypothetical protein | phrog_4457 | unknown function | unknown function | 1 | 24993 | 25202 |
| ATE85839.1 | MF158040_p38 | hypothetical protein | phrog_4559 | unknown function | unknown function | -1 | 28236 | 28487 |
| ATE85836.1 | MF158040_p35 | hypothetical protein | phrog_9967 | unknown function | unknown function | 1 | 25244 | 25540 |
| ATE85841.1 | MF158040_p40 | hypothetical protein | phrog_4725 | unknown function | unknown function | -1 | 28878 | 29405 |
| ATE85803.1 | MF158040_p2 | hypothetical protein | phrog_280 | virion structural protein | head and packaging | -1 | 673 | 1119 |
| ATE85908.1 | MF158040_p107 | hypothetical protein | phrog_902 | unknown function | unknown function | 1 | 69353 | 69598 |
| ATE85838.1 | MF158040_p37 | hypothetical protein | phrog_4330 | unknown function | unknown function | 1 | 25964 | 26629 |
| ATE85918.1 | MF158040_p117 | dihydrofolate reductase | phrog_316 | dihydrofolate reductase | DNA, RNA and nucleotide metabolism | 1 | 73498 | 74043 |
| ATE85820.1 | MF158040_p19 | hypothetical protein | phrog_4114 | unknown function | unknown function | -1 | 18005 | 18376 |
| ATE85855.1 | MF158040_p54 | hypothetical protein | phrog_4495 | unknown function | unknown function | -1 | 34598 | 34978 |
| ATE85844.1 | MF158040_p43 | hypothetical protein | phrog_13570 | unknown function | unknown function | -1 | 30235 | 30432 |
| ATE85819.1 | MF158040_p18 | hypothetical protein | phrog_850 | RNA-binding protein | DNA, RNA and nucleotide metabolism | -1 | 16513 | 17928 |
| ATE85928.1 | MF158040_p127 | baseplate protein | phrog_11 | baseplate spike | tail | -1 | 82282 | 82923 |
| ATE85857.1 | MF158040_p56 | hypothetical protein | phrog_5293 | unknown function | unknown function | -1 | 35236 | 35442 |
| ATE85917.1 | MF158040_p116 | hypothetical protein | phrog_2993 | unknown function | unknown function | 1 | 73229 | 73501 |
| ATE85907.1 | MF158040_p106 | hypothetical protein | phrog_9065 | unknown function | unknown function | 1 | 69091 | 69342 |
| ATE85930.1 | MF158040_p129 | hypothetical protein | phrog_349 | virion structural protein | head and packaging | -1 | 83897 | 84238 |
| ATE85818.1 | MF158040_p17 | hypothetical protein | phrog_10765 | unknown function | unknown function | -1 | 13047 | 13259 |
| ATE85904.1 | MF158040_p103 | HNH homing endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 68091 | 68618 |
| ATE85898.1 | MF158040_p97 | DNA primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | -1 | 60919 | 62910 |
| ATE85859.1 | MF158040_p58 | hypothetical protein | phrog_335 | phosphatase | other | -1 | 35947 | 36741 |
| ATE85845.1 | MF158040_p44 | hypothetical protein | phrog_10118 | unknown function | unknown function | -1 | 30524 | 30823 |
| ATE85816.1 | MF158040_p15 | hypothetical protein | phrog_4397 | unknown function | unknown function | -1 | 11230 | 11436 |
| ATE85889.1 | MF158040_p88 | hypothetical protein | phrog_3358 | unknown function | unknown function | -1 | 56386 | 56721 |
| ATE85811.1 | MF158040_p10 | prohead protease | phrog_53 | head maturation protease | head and packaging | -1 | 5938 | 7284 |
| ATE85833.1 | MF158040_p32 | hypothetical protein | phrog_4343 | unknown function | unknown function | 1 | 24416 | 24922 |
| ATE85808.1 | MF158040_p7 | hypothetical protein | phrog_1732 | unknown function | unknown function | -1 | 3941 | 4390 |
| ATE85891.1 | MF158040_p90 | phosphoribosyl-ATP pyrophosphohydrolase-like protein | phrog_2144 | MazG-like pyrophosphatase | other | -1 | 57021 | 57776 |
| ATE85905.1 | MF158040_p104 | hypothetical protein | phrog_4230 | unknown function | unknown function | 1 | 68670 | 68888 |
| ATE85909.1 | MF158040_p108 | hypothetical protein | phrog_4427 | unknown function | unknown function | 1 | 69600 | 69806 |
| ATE85822.1 | MF158040_p21 | hypothetical protein | phrog_4034 | unknown function | unknown function | 1 | 18994 | 19584 |
| ATE85848.1 | MF158040_p47 | hypothetical protein | phrog_9030 | unknown function | unknown function | -1 | 31760 | 32008 |
| ATE85868.1 | MF158040_p67 | hypothetical protein | phrog_600 | unknown function | unknown function | -1 | 39461 | 40009 |
| ATE85925.1 | MF158040_p124 | hypothetical protein | phrog_4017 | baseplate protein | tail | -1 | 79537 | 80394 |
| ATE85805.1 | MF158040_p4 | hypothetical protein | phrog_4082 | unknown function | unknown function | -1 | 2487 | 3086 |
| ATE85870.1 | MF158040_p69 | rIIA protein | phrog_612 | RIIA lysis inhibitor | lysis | -1 | 41312 | 43684 |
| ATE85873.1 | MF158040_p72 | nicotinamide phosphoribosyltransferase | phrog_448 | nicotinamide phosphoribosyl transferase | other | -1 | 44297 | 46114 |
| ATE85910.1 | MF158040_p109 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 69803 | 70903 |
| ATE85829.1 | MF158040_p28 | hypothetical protein | phrog_4040 | unknown function | unknown function | 1 | 22454 | 22798 |
| ATE85879.1 | MF158040_p78 | hypothetical protein | phrog_5082 | unknown function | unknown function | -1 | 48486 | 48806 |
| ATE85846.1 | MF158040_p45 | hypothetical protein | phrog_4640 | unknown function | unknown function | -1 | 30824 | 31054 |
| ATE85850.1 | MF158040_p49 | hypothetical protein | phrog_3436 | unknown function | unknown function | -1 | 32591 | 32863 |
| ATE85864.1 | MF158040_p63 | o-spanin | phrog_4180 | unknown function | unknown function | -1 | 37749 | 37946 |
| ATE85867.1 | MF158040_p66 | polynucleotide kinase | phrog_3970 | polynucleotide kinase | other | -1 | 38788 | 39483 |
| ATE85916.1 | MF158040_p115 | hypothetical protein | phrog_4422 | unknown function | unknown function | 1 | 72711 | 73232 |
| ATE85923.1 | MF158040_p122 | tail fiber protein | phrog_2097 | tail fiber protein | tail | -1 | 78060 | 79235 |
| ATE85842.1 | MF158040_p41 | hypothetical protein | phrog_7482 | unknown function | unknown function | -1 | 29471 | 29611 |
| ATE85840.1 | MF158040_p39 | hypothetical protein | phrog_7022 | unknown function | unknown function | -1 | 28554 | 28817 |
| ATE85896.1 | MF158040_p95 | hypothetical protein | phrog_4424 | unknown function | unknown function | -1 | 60532 | 60669 |
| ATE85866.1 | MF158040_p65 | hypothetical protein | phrog_2267 | unknown function | unknown function | -1 | 38312 | 38776 |
| ATE85914.1 | MF158040_p113 | hypothetical protein | phrog_4116 | unknown function | unknown function | 1 | 71862 | 72221 |
| ATE85858.1 | MF158040_p57 | hypothetical protein | phrog_15689 | unknown function | unknown function | 1 | 35664 | 35942 |
| ATE85874.1 | MF158040_p73 | ribose-phosphate pyrophosphokinase | phrog_619 | ribose-phosphate pyrophosphokinase | other | -1 | 46159 | 47040 |
| ATE85887.1 | MF158040_p86 | hypothetical protein | phrog_2652 | unknown function | unknown function | -1 | 53769 | 54098 |
| ATE85830.1 | MF158040_p29 | hypothetical protein | phrog_4109 | unknown function | unknown function | 1 | 22800 | 23393 |
| ATE85802.1 | MF158040_p1 | tape measure protein | phrog_1613 | tail assembly chaperone | tail | -1 | 195 | 596 |
| ATE85813.1 | MF158040_p12 | hypothetical protein | phrog_3977 | unknown function | unknown function | -1 | 7628 | 8128 |
| ATE85901.1 | MF158040_p100 | hypothetical protein | phrog_4251 | minor tail protein | tail | -1 | 63905 | 64699 |
| ATE85906.1 | MF158040_p105 | hypothetical protein | phrog_5180 | unknown function | unknown function | 1 | 68885 | 69094 |
| ATE85927.1 | MF158040_p126 | hypothetical protein | phrog_120 | baseplate wedge subunit | tail | -1 | 81866 | 82282 |
| ATE85843.1 | MF158040_p42 | hypothetical protein | phrog_4318 | unknown function | unknown function | -1 | 29808 | 30149 |
| ATE85921.1 | MF158040_p120 | hypothetical protein | phrog_402 | unknown function | unknown function | -1 | 75355 | 75549 |
| ATE85872.1 | MF158040_p71 | hypothetical protein | phrog_4262 | unknown function | unknown function | -1 | 43908 | 44243 |
| ATE85826.1 | MF158040_p25 | hypothetical protein | phrog_4266 | unknown function | unknown function | 1 | 21395 | 21793 |
| ATE85809.1 | MF158040_p8 | major capsid protein | phrog_29 | major head protein | head and packaging | -1 | 4413 | 5516 |
| ATE85854.1 | MF158040_p53 | hypothetical protein | phrog_5089 | unknown function | unknown function | -1 | 34249 | 34506 |
| ATE85893.1 | MF158040_p92 | GIY-YIG homing endonuclease | phrog_447 | NAD synthetase | other | -1 | 57993 | 58493 |
| ATE85902.1 | MF158040_p101 | hypothetical protein | phrog_4039 | unknown function | unknown function | -1 | 64683 | 65123 |
| ATE85856.1 | MF158040_p55 | hypothetical protein | phrog_14219 | unknown function | unknown function | -1 | 35063 | 35224 |
| ATE85903.1 | MF158040_p102 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 65382 | 68081 |
| ATE85863.1 | MF158040_p62 | hypothetical protein | phrog_4391 | unknown function | unknown function | -1 | 37483 | 37752 |
| ATE85922.1 | MF158040_p121 | tail fiber protein | phrog_4277 | tail fiber protein | tail | -1 | 75636 | 78014 |
| ATE85810.1 | MF158040_p9 | hypothetical protein | phrog_4146 | tail protease | other | -1 | 5548 | 5925 |
| ATE85912.1 | MF158040_p111 | hypothetical protein | phrog_4473 | unknown function | unknown function | 1 | 71365 | 71568 |
| ATE85913.1 | MF158040_p112 | lambda-like transcriptional regulator | phrog_1373 | transcriptional regulator | transcription regulation | 1 | 71561 | 71860 |
| ATE85875.1 | MF158040_p74 | hypothetical protein | phrog_4726 | unknown function | unknown function | -1 | 47051 | 47329 |
| ATE85847.1 | MF158040_p46 | hypothetical protein | phrog_3303 | unknown function | unknown function | -1 | 31118 | 31675 |
| ATE85807.1 | MF158040_p6 | hypothetical protein | phrog_222 | tail completion or Neck1 protein | connector | -1 | 3459 | 3941 |
| ATE85827.1 | MF158040_p26 | hypothetical protein | phrog_4348 | unknown function | unknown function | 1 | 21786 | 22166 |
| ATE85920.1 | MF158040_p119 | holin | phrog_4038 | unknown function | unknown function | -1 | 74981 | 75355 |
| ATE85911.1 | MF158040_p110 | hypothetical protein | phrog_4332 | unknown function | unknown function | 1 | 70989 | 71363 |
| ATE85871.1 | MF158040_p70 | hypothetical protein | phrog_3931 | unknown function | unknown function | -1 | 43747 | 43926 |
| ATE85877.1 | MF158040_p76 | HNH homing endonuclease | phrog_4462 | unknown function | unknown function | -1 | 47890 | 48201 |
| ATE85823.1 | MF158040_p22 | hypothetical protein | phrog_4463 | unknown function | unknown function | 1 | 19628 | 19996 |
| ATE85876.1 | MF158040_p75 | hypothetical protein | phrog_3500 | unknown function | unknown function | -1 | 47322 | 47837 |
| ATE85853.1 | MF158040_p52 | hypothetical protein | phrog_4190 | unknown function | unknown function | -1 | 33644 | 34156 |
| ATE85824.1 | MF158040_p23 | tail protein | phrog_3995 | tail protein | tail | 1 | 19993 | 20877 |
| ATE85821.1 | MF158040_p20 | hypothetical protein | phrog_5064 | unknown function | unknown function | 1 | 18767 | 19000 |
| ATE85861.1 | MF158040_p60 | hypothetical protein | phrog_6082 | unknown function | unknown function | -1 | 36936 | 37172 |
| ATE85860.1 | MF158040_p59 | hypothetical protein | phrog_2210 | unknown function | unknown function | -1 | 36743 | 36943 |
| ATE85814.1 | MF158040_p13 | hypothetical protein | phrog_113 | portal protein | head and packaging | -1 | 8128 | 9594 |
| ATE85878.1 | MF158040_p77 | hypothetical protein | phrog_4425 | unknown function | unknown function | -1 | 48213 | 48470 |
| ATE85883.1 | MF158040_p82 | anaerobic NTP reductase, large subunit | phrog_487 | NrdD-like anaerobic ribonucleotide reductase large subunit | moron, auxiliary metabolic gene and host takeover | -1 | 50070 | 52214 |
| ATE85897.1 | MF158040_p96 | hypothetical protein | phrog_4982 | unknown function | unknown function | -1 | 60666 | 60944 |
| ATE85862.1 | MF158040_p61 | hypothetical protein | phrog_4453 | unknown function | unknown function | -1 | 37147 | 37473 |
| ATE85899.1 | MF158040_p98 | hypothetical protein | phrog_4469 | unknown function | unknown function | -1 | 62903 | 63103 |
| ATE85815.1 | MF158040_p14 | terminase large subunit | phrog_979 | terminase large subunit | head and packaging | -1 | 9607 | 11208 |
| ATE85832.1 | MF158040_p31 | hypothetical protein | phrog_4459 | unknown function | unknown function | 1 | 24201 | 24419 |
| ATE85881.1 | MF158040_p80 | hypothetical protein | phrog_4382 | unknown function | unknown function | -1 | 49254 | 49646 |
| ATE85884.1 | MF158040_p83 | hypothetical protein | phrog_4532 | unknown function | unknown function | -1 | 52264 | 52464 |
| ATE85890.1 | MF158040_p89 | hypothetical protein | phrog_4007 | unknown function | unknown function | -1 | 56714 | 57040 |
| ATE85852.1 | MF158040_p51 | hypothetical protein | phrog_4401 | unknown function | unknown function | -1 | 33263 | 33559 |
| ATE85882.1 | MF158040_p81 | hypothetical protein | phrog_8826 | unknown function | unknown function | -1 | 49743 | 50000 |
| ATE85924.1 | MF158040_p123 | hypothetical protein | phrog_4141 | unknown function | unknown function | -1 | 79238 | 79537 |
| ATE85919.1 | MF158040_p118 | thymidylate synthase | phrog_160 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 74045 | 74944 |
| ATE85933.1 | MF158040_p132 | tail tape measure chaperone | phrog_4963 | tail assembly chaperone | tail | -1 | 87281 | 87508 |
| ATE85837.1 | MF158040_p36 | hypothetical protein | phrog_4713 | unknown function | unknown function | 1 | 25527 | 25961 |
| ATE85849.1 | MF158040_p48 | hypothetical protein | phrog_4327 | unknown function | unknown function | -1 | 32094 | 32501 |
| ATE85915.1 | MF158040_p114 | hypothetical protein | phrog_9143 | unknown function | unknown function | 1 | 72206 | 72709 |
| ATE85825.1 | MF158040_p24 | lysozyme | phrog_7 | endolysin | lysis | 1 | 20880 | 21344 |
| ATE85834.1 | MF158040_p33 | hypothetical protein | phrog_6279 | unknown function | unknown function | 1 | 24904 | 24996 |
| ATE85926.1 | MF158040_p125 | baseplate assembly protein | phrog_6 | baseplate wedge subunit | tail | -1 | 80397 | 81866 |
| ATE85817.1 | MF158040_p16 | hypothetical protein | phrog_2114 | unknown function | unknown function | -1 | 11832 | 12566 |
| ATE85929.1 | MF158040_p128 | hypothetical protein | phrog_196 | baseplate hub | tail | -1 | 82920 | 83897 |
| ATE85812.1 | MF158040_p11 | hypothetical protein | phrog_240 | head protein | head and packaging | -1 | 7296 | 7628 |
| ATE85932.1 | MF158040_p131 | tail tape measure protein | phrog_4036 | tail length tape measure protein | tail | -1 | 85044 | 87281 |
| ATE85931.1 | MF158040_p130 | hypothetical protein | phrog_3721 | unknown function | unknown function | -1 | 84238 | 85044 |
| ATE85886.1 | MF158040_p85 | ribonucleoside triphosphate reductase, small subunit | phrog_86 | ribonucleoside diphosphate reductase small subunit | DNA, RNA and nucleotide metabolism | -1 | 52699 | 53772 |
| ATE85892.1 | MF158040_p91 | hypothetical protein | phrog_4442 | unknown function | unknown function | -1 | 57776 | 57991 |
| ATE85865.1 | MF158040_p64 | i-spanin | phrog_1152 | Rz-like spanin | lysis | -1 | 37912 | 38259 |
| ATE85894.1 | MF158040_p93 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 58483 | 59523 |
| ATE85880.1 | MF158040_p79 | anaerobic NTP reductase, small subunit | phrog_626 | anaerobic ribonucleotide reductase small subunit | DNA, RNA and nucleotide metabolism | -1 | 48769 | 49254 |
| ATE85804.1 | MF158040_p3 | hypothetical protein | phrog_205 | tail sheath | tail | -1 | 1134 | 2486 |
| ATE85888.1 | MF158040_p87 | ribonucleoside triphosphate reductase, large subunit | phrog_84 | ribonucleoside-diphosphate reductase large subunit | DNA, RNA and nucleotide metabolism | -1 | 54100 | 56334 |
| ATE85806.1 | MF158040_p5 | hypothetical protein | phrog_2874 | unknown function | unknown function | -1 | 3061 | 3462 |