Genomic map of Shigella phage Sf15 (MF158041)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MF158041
Definition
Shigella phage Sf15, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Ounavirinae; Mooglevirus; unclassified Mooglevirus.
DB of origin
NUCCORE
Length
88474
Host Name
Shigella flexneri
Host domain
Bacteria
Is prophage?
undef
Number of proteins
134
%GC
38.99
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ATE86014.1 MF158041_p81 hypothetical protein phrog_11 baseplate spike tail -1 50723 51364
ATE85935.1 MF158041_p2 hypothetical protein phrog_3436 unknown function unknown function -1 579 851
ATE86005.1 MF158041_p72 thymidylate synthase phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism 1 42486 43385
ATE86059.1 MF158041_p126 hypothetical protein phrog_7022 unknown function unknown function -1 84767 85030
ATE86017.1 MF158041_p84 hypothetical protein phrog_3721 unknown function unknown function -1 52679 53485
ATE85957.1 MF158041_p24 hypothetical protein phrog_4262 unknown function unknown function -1 11895 12230
ATE85959.1 MF158041_p26 ribose-phosphate pyrophosphokinase phrog_619 ribose-phosphate pyrophosphokinase other -1 14146 15027
ATE86004.1 MF158041_p71 dihydrofolate reductase phrog_316 dihydrofolate reductase DNA, RNA and nucleotide metabolism 1 41939 42484
ATE86056.1 MF158041_p123 hypothetical protein phrog_4713 unknown function unknown function 1 81713 82177
ATE86018.1 MF158041_p85 tail tape measure protein phrog_4036 tail length tape measure protein tail -1 53485 55722
ATE86009.1 MF158041_p76 tail fiber protein phrog_2097 tail fiber protein tail -1 46501 47676
ATE86045.1 MF158041_p112 hypothetical protein phrog_4348 unknown function unknown function 1 77524 77904
ATE85945.1 MF158041_p12 hypothetical protein phrog_2210 unknown function unknown function -1 4730 4930
ATE85983.1 MF158041_p50 hypothetical protein phrog_4469 unknown function unknown function -1 30890 31090
ATE85973.1 MF158041_p40 hypothetical protein phrog_3358 unknown function unknown function -1 24373 24708
ATE86064.1 MF158041_p131 hypothetical protein phrog_10118 unknown function unknown function -1 86738 87037
ATE85960.1 MF158041_p27 hypothetical protein phrog_4726 unknown function unknown function -1 15038 15316
ATE86031.1 MF158041_p98 hypothetical protein phrog_3977 unknown function unknown function -1 63391 63891
ATE85952.1 MF158041_p19 polynucleotide kinase phrog_3970 polynucleotide kinase other -1 6775 7470
ATE86030.1 MF158041_p97 hypothetical protein phrog_240 head protein head and packaging -1 63059 63391
ATE86053.1 MF158041_p120 hypothetical protein phrog_4457 unknown function unknown function 1 80731 80940
ATE85995.1 MF158041_p62 hypothetical protein singleton unknown function unknown function 1 37602 38090
ATE86049.1 MF158041_p116 hypothetical protein phrog_5380 unknown function unknown function 1 79202 79942
ATE85967.1 MF158041_p34 anaerobic NTP reductase, large subunit phrog_487 NrdD-like anaerobic ribonucleotide reductase large subunit moron, auxiliary metabolic gene and host takeover -1 18057 20201
ATE86021.1 MF158041_p88 hypothetical protein phrog_280 virion structural protein head and packaging -1 56436 56882
ATE86062.1 MF158041_p129 hypothetical protein phrog_4318 unknown function unknown function -1 86022 86363
ATE86051.1 MF158041_p118 hypothetical protein phrog_4343 unknown function unknown function 1 80154 80660
ATE85956.1 MF158041_p23 hypothetical protein phrog_3931 unknown function unknown function -1 11734 11913
ATE86022.1 MF158041_p89 hypothetical protein phrog_205 tail sheath tail -1 56897 58249
ATE86042.1 MF158041_p109 tail fiber protein phrog_3995 tail protein tail 1 75731 76615
ATE85970.1 MF158041_p37 ribonucleotide triphosphate reductase, small subunit phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism -1 20686 21759
ATE86033.1 MF158041_p100 terminase large subunit phrog_979 terminase large subunit head and packaging -1 65370 66971
ATE85980.1 MF158041_p47 hypothetical protein phrog_4424 unknown function unknown function -1 28519 28656
ATE86002.1 MF158041_p69 hypothetical protein phrog_4422 unknown function unknown function 1 41158 41673
ATE86065.1 MF158041_p132 hypothetical protein phrog_4640 unknown function unknown function -1 87038 87268
ATE86034.1 MF158041_p101 hypothetical protein phrog_4397 unknown function unknown function -1 66993 67199
ATE86054.1 MF158041_p121 hypothetical protein phrog_7193 unknown function unknown function 1 80984 81427
ATE85990.1 MF158041_p57 hypothetical protein phrog_3474 unknown function unknown function 1 36534 36725
ATE85985.1 MF158041_p52 hypothetical protein phrog_4251 minor tail protein tail -1 31892 32686
ATE86058.1 MF158041_p125 hypothetical protein phrog_4559 unknown function unknown function -1 84450 84701
ATE85969.1 MF158041_p36 glutaredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 20444 20686
ATE86067.1 MF158041_p134 hypothetical protein phrog_9030 unknown function unknown function -1 87974 88222
ATE85992.1 MF158041_p59 hypothetical protein phrog_9065 unknown function unknown function 1 36845 37096
ATE86016.1 MF158041_p83 hypothetical protein phrog_349 virion structural protein head and packaging -1 52338 52679
ATE86008.1 MF158041_p75 tail fiber protein phrog_4277 tail fiber protein tail -1 44077 46455
ATE85974.1 MF158041_p41 hypothetical protein phrog_4007 unknown function unknown function -1 24701 25027
ATE85997.1 MF158041_p64 hypothetical protein phrog_4332 unknown function unknown function 1 39429 39809
ATE86000.1 MF158041_p67 hypothetical protein phrog_4116 unknown function unknown function 1 40309 40668
ATE86050.1 MF158041_p117 hypothetical protein phrog_4459 unknown function unknown function 1 79939 80157
ATE85971.1 MF158041_p38 hypothetical protein phrog_2652 unknown function unknown function -1 21756 22031
ATE86027.1 MF158041_p94 major capsid protein phrog_29 major head protein head and packaging -1 60176 61279
ATE85954.1 MF158041_p21 rIIB protein phrog_609 RIIB lysis inhibitor lysis -1 8098 9219
ATE86035.1 MF158041_p102 hypothetical protein phrog_2114 unknown function unknown function -1 67595 68329
ATE86012.1 MF158041_p79 baseplate assembly protein phrog_6 baseplate wedge subunit tail -1 48838 50307
ATE85953.1 MF158041_p20 hypothetical protein phrog_600 unknown function unknown function -1 7448 7996
ATE85972.1 MF158041_p39 ribonucleotide triphosphate reductase, large subunit phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism -1 22087 24321
ATE86046.1 MF158041_p113 hypothetical protein phrog_4385 unknown function unknown function 1 77906 78199
ATE85941.1 MF158041_p8 hypothetical protein phrog_14219 unknown function unknown function -1 3050 3211
ATE85937.1 MF158041_p4 hypothetical protein phrog_4401 unknown function unknown function -1 1251 1547
ATE86048.1 MF158041_p115 hypothetical protein phrog_4109 unknown function unknown function 1 78538 79131
ATE85982.1 MF158041_p49 DNA primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism -1 28906 30897
ATE86010.1 MF158041_p77 hypothetical protein phrog_4141 unknown function unknown function -1 47679 47978
ATE86037.1 MF158041_p104 hypothetical protein phrog_850 RNA-binding protein DNA, RNA and nucleotide metabolism -1 72251 73666
ATE85938.1 MF158041_p5 hypothetical protein phrog_4190 unknown function unknown function -1 1632 2144
ATE85940.1 MF158041_p7 hypothetical protein phrog_4495 unknown function unknown function -1 2585 2965
ATE85986.1 MF158041_p53 hypothetical protein phrog_4039 unknown function unknown function -1 32670 33110
ATE85950.1 MF158041_p17 i-spanin phrog_1152 Rz-like spanin lysis -1 5899 6246
ATE85975.1 MF158041_p42 phosphoribosyl-ATP pyrophosphohydrolase-like protein phrog_2144 MazG-like pyrophosphatase other -1 25008 25763
ATE85934.1 MF158041_p1 hypothetical protein phrog_4327 unknown function unknown function -1 82 489
ATE85955.1 MF158041_p22 rIIA protein phrog_612 RIIA lysis inhibitor lysis -1 9299 11671
ATE85949.1 MF158041_p16 o-spanin phrog_4180 unknown function unknown function -1 5736 5933
ATE86057.1 MF158041_p124 hypothetical protein phrog_4330 unknown function unknown function 1 82180 82845
ATE85943.1 MF158041_p10 hypothetical protein phrog_15689 unknown function unknown function 1 3652 3837
ATE86066.1 MF158041_p133 hypothetical protein phrog_3303 unknown function unknown function -1 87332 87889
ATE86013.1 MF158041_p80 hypothetical protein phrog_120 baseplate wedge subunit tail -1 50307 50723
ATE85984.1 MF158041_p51 deoxynucleotide monophosphate kinase phrog_139 deoxynucleoside monophosphate kinase other -1 31094 31834
ATE85994.1 MF158041_p61 hypothetical protein phrog_4427 unknown function unknown function 1 37354 37560
ATE85976.1 MF158041_p43 hypothetical protein phrog_4442 unknown function unknown function -1 25763 25978
ATE86026.1 MF158041_p93 hypothetical protein phrog_1732 unknown function unknown function -1 59704 60153
ATE85942.1 MF158041_p9 hypothetical protein phrog_5293 unknown function unknown function -1 3224 3430
ATE85993.1 MF158041_p60 hypothetical protein phrog_902 unknown function unknown function 1 37107 37352
ATE86052.1 MF158041_p119 hypothetical protein phrog_6279 unknown function unknown function 1 80642 80734
ATE86020.1 MF158041_p87 tail tape measure chaperone phrog_1613 tail assembly chaperone tail -1 55958 56359
ATE85998.1 MF158041_p65 hypothetical protein phrog_4473 unknown function unknown function 1 39812 40015
ATE86029.1 MF158041_p96 head maturation protease phrog_53 head maturation protease head and packaging -1 61701 63047
ATE86041.1 MF158041_p108 hypothetical protein phrog_4463 unknown function unknown function 1 75366 75734
ATE86019.1 MF158041_p86 tail tape measure chaperone phrog_4963 tail assembly chaperone tail -1 55722 55949
ATE86063.1 MF158041_p130 hypothetical protein phrog_13570 unknown function unknown function -1 86449 86646
ATE85939.1 MF158041_p6 hypothetical protein phrog_5089 unknown function unknown function -1 2236 2493
ATE85999.1 MF158041_p66 transcriptional regulatory protein phrog_1373 transcriptional regulator transcription regulation 1 40008 40307
ATE86024.1 MF158041_p91 hypothetical protein phrog_2874 unknown function unknown function -1 58824 59225
ATE86043.1 MF158041_p110 lysozyme phrog_7 endolysin lysis 1 76618 77082
ATE86055.1 MF158041_p122 hypothetical protein phrog_9967 unknown function unknown function 1 81430 81726
ATE85987.1 MF158041_p54 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 33370 36069
ATE85989.1 MF158041_p56 hypothetical protein phrog_5180 unknown function unknown function 1 36328 36537
ATE85988.1 MF158041_p55 hypothetical protein phrog_4230 unknown function unknown function 1 36131 36331
ATE85965.1 MF158041_p32 anaerobic NTP reductase, small subunit phrog_626 anaerobic ribonucleotide reductase small subunit DNA, RNA and nucleotide metabolism -1 16756 17241
ATE85977.1 MF158041_p44 GIY-YIG homing endonuclease phrog_447 NAD synthetase other -1 25980 26480
ATE85966.1 MF158041_p33 hypothetical protein phrog_4382 unknown function unknown function -1 17241 17633
ATE86044.1 MF158041_p111 hypothetical protein phrog_4266 unknown function unknown function 1 77133 77531
ATE85946.1 MF158041_p13 hypothetical protein phrog_6082 unknown function unknown function -1 4923 5159
ATE85951.1 MF158041_p18 hypothetical protein phrog_2267 unknown function unknown function -1 6299 6763
ATE85948.1 MF158041_p15 hypothetical protein phrog_4391 unknown function unknown function -1 5470 5739
ATE86015.1 MF158041_p82 hypothetical protein phrog_196 baseplate hub tail -1 51361 52338
ATE85947.1 MF158041_p14 hypothetical protein phrog_4453 unknown function unknown function -1 5134 5460
ATE86025.1 MF158041_p92 hypothetical protein phrog_222 tail completion or Neck1 protein connector -1 59222 59704
ATE85996.1 MF158041_p63 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 38087 39187
ATE86039.1 MF158041_p106 hypothetical protein phrog_5064 unknown function unknown function 1 74505 74738
ATE85964.1 MF158041_p31 hypothetical protein phrog_5082 unknown function unknown function -1 16473 16793
ATE86006.1 MF158041_p73 holin phrog_4038 unknown function unknown function -1 43422 43796
ATE85944.1 MF158041_p11 hypothetical protein phrog_335 phosphatase other -1 3934 4728
ATE86038.1 MF158041_p105 hypothetical protein phrog_4114 unknown function unknown function -1 73743 74114
ATE86047.1 MF158041_p114 hypothetical protein phrog_4040 unknown function unknown function 1 78192 78536
ATE86001.1 MF158041_p68 hypothetical protein phrog_9143 unknown function unknown function 1 40653 41156
ATE86036.1 MF158041_p103 hypothetical protein phrog_10765 unknown function unknown function -1 68810 69022
ATE85958.1 MF158041_p25 nicotinamide phosphoribosyltransferase phrog_448 nicotinamide phosphoribosyl transferase other -1 12284 14101
ATE85968.1 MF158041_p35 hypothetical protein phrog_4532 unknown function unknown function -1 20251 20451
ATE85991.1 MF158041_p58 hypothetical protein phrog_2381 unknown function unknown function 1 36712 36855
ATE86028.1 MF158041_p95 hypothetical protein phrog_4146 tail protease other -1 61311 61688
ATE85962.1 MF158041_p29 HNH endonuclease phrog_4462 unknown function unknown function -1 15877 16188
ATE85978.1 MF158041_p45 exodeoxyribonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism -1 26470 27510
ATE85963.1 MF158041_p30 hypothetical protein phrog_4425 unknown function unknown function -1 16200 16457
ATE86007.1 MF158041_p74 hypothetical protein phrog_402 unknown function unknown function -1 43796 43990
ATE86032.1 MF158041_p99 hypothetical protein phrog_113 portal protein head and packaging -1 63891 65357
ATE86060.1 MF158041_p127 hypothetical protein phrog_4725 unknown function unknown function -1 85092 85619
ATE85979.1 MF158041_p46 hypothetical protein phrog_3877 unknown function unknown function -1 27573 28433
ATE86023.1 MF158041_p90 hypothetical protein phrog_4082 unknown function unknown function -1 58250 58849
ATE86011.1 MF158041_p78 hypothetical protein phrog_4017 baseplate protein tail -1 47978 48835
ATE85961.1 MF158041_p28 hypothetical protein phrog_3500 unknown function unknown function -1 15309 15824
ATE85981.1 MF158041_p48 hypothetical protein phrog_4982 unknown function unknown function -1 28653 28931
ATE86003.1 MF158041_p70 hypothetical protein phrog_2993 unknown function unknown function 1 41703 41942
ATE85936.1 MF158041_p3 hypothetical protein phrog_4375 unknown function unknown function -1 910 1257
ATE86061.1 MF158041_p128 hypothetical protein phrog_7482 unknown function unknown function -1 85685 85825
ATE86040.1 MF158041_p107 hypothetical protein phrog_4034 unknown function unknown function 1 74732 75322