Genomic map of Shigella phage Sd1 (MF158042)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MF158042
Definition
Shigella phage Sd1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Drexlerviridae; Rogunavirinae; Wilsonroadvirus; Shigella virus Sd1.
DB of origin
NUCCORE
Length
48262
Host Name
Shigella dysenteriae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
73
%GC
44.49
Number of singletons
8
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ATE86100.1 MF158042_p33 tail tape measure protein phrog_24 tail length tape measure protein tail -1 22747 25713
ATE86072.1 MF158042_p5 hypothetical protein phrog_4596 unknown function unknown function -1 2427 2678
ATE86075.1 MF158042_p8 hypothetical protein phrog_3249 unknown function unknown function -1 3122 3313
ATE86093.1 MF158042_p26 hypothetical protein phrog_557 outer membrane protein other -1 15897 16202
ATE86091.1 MF158042_p24 hypothetical protein singleton unknown function unknown function -1 14643 15203
ATE86105.1 MF158042_p38 hypothetical protein phrog_169 tail completion or Neck1 protein connector -1 27505 27933
ATE86074.1 MF158042_p7 hypothetical protein phrog_2180 unknown function unknown function -1 2926 3051
ATE86112.1 MF158042_p45 hypothetical protein phrog_9703 head decoration head and packaging -1 32294 33586
ATE86089.1 MF158042_p22 regulatory protein phrog_8235 anti-repressor transcription regulation -1 13055 13798
ATE86108.1 MF158042_p41 hypothetical protein phrog_2716 unknown function unknown function -1 28737 29033
ATE86128.1 MF158042_p61 hypothetical protein phrog_8335 unknown function unknown function -1 41549 41788
ATE86106.1 MF158042_p39 hypothetical protein phrog_161 head closure Hc1 connector -1 27926 28294
ATE86084.1 MF158042_p17 nucleic acid binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 10349 10771
ATE86122.1 MF158042_p55 hypothetical protein phrog_3955 unknown function unknown function -1 40238 40372
ATE86081.1 MF158042_p14 transcriptional regulator phrog_2856 transcriptional regulator transcription regulation 1 6480 6965
ATE86077.1 MF158042_p10 hypothetical protein phrog_22569 unknown function unknown function -1 3531 3689
ATE86133.1 MF158042_p66 hypothetical protein phrog_4548 unknown function unknown function 1 43785 43937
ATE86101.1 MF158042_p34 hypothetical protein phrog_680 tail length tape measure protein tail -1 25748 26002
ATE86099.1 MF158042_p32 tail tip protein phrog_14 minor tail protein tail -1 22365 22715
ATE86121.1 MF158042_p54 hypothetical protein phrog_303 unknown function unknown function -1 39912 40151
ATE86138.1 MF158042_p71 hypothetical protein phrog_2794 unknown function unknown function 1 46975 47310
ATE86139.1 MF158042_p72 Rz1-like protein phrog_1804 Rz-like spanin lysis -1 47324 47728
ATE86085.1 MF158042_p18 recombination protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 10819 11469
ATE86119.1 MF158042_p52 terminase small subunit phrog_606 terminase small subunit head and packaging -1 38659 39174
ATE86094.1 MF158042_p27 tail tip attachment protein phrog_31 central tail fiber J tail -1 16251 19646
ATE86134.1 MF158042_p67 cytosine DNA methylase phrog_757 DNA methyltransferase other 1 43934 44617
ATE86088.1 MF158042_p21 hypothetical protein phrog_5247 unknown function unknown function -1 12732 12926
ATE86102.1 MF158042_p35 tail assembly chaperone phrog_569 tail length tape measure protein tail -1 26065 26409
ATE86126.1 MF158042_p59 hypothetical protein phrog_2452 unknown function unknown function -1 40957 41292
ATE86068.1 MF158042_p1 holin phrog_2877 holin lysis -1 246 461
ATE86109.1 MF158042_p42 DNA-binding protein phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 29026 29616
ATE86107.1 MF158042_p40 hypothetical protein phrog_302 virion structural protein head and packaging -1 28291 28692
ATE86095.1 MF158042_p28 HNH homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 19688 20176
ATE86086.1 MF158042_p19 hypothetical protein singleton unknown function unknown function -1 11470 11703
ATE86110.1 MF158042_p43 major capsid protein phrog_264 major head protein head and packaging -1 29690 30649
ATE86111.1 MF158042_p44 hypothetical protein phrog_5073 tail fiber protein tail -1 30737 32212
ATE86120.1 MF158042_p53 hypothetical protein phrog_2919 unknown function unknown function -1 39274 39423
ATE86104.1 MF158042_p37 tail protein phrog_179 tail terminator connector -1 27117 27515
ATE86113.1 MF158042_p46 hypothetical protein phrog_1989 unknown function unknown function -1 33677 34147
ATE86140.1 MF158042_p73 endolysin phrog_7 endolysin lysis -1 47710 48195
ATE86118.1 MF158042_p51 hypothetical protein singleton unknown function unknown function -1 38549 38662
ATE86117.1 MF158042_p50 terminase large subunit phrog_38 terminase large subunit head and packaging -1 36984 38552
ATE86071.1 MF158042_p4 hypothetical protein phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism -1 1216 2343
ATE86080.1 MF158042_p13 DNA helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 4384 6378
ATE86127.1 MF158042_p60 hypothetical protein singleton unknown function unknown function -1 41289 41417
ATE86132.1 MF158042_p65 hypothetical protein phrog_4448 unknown function unknown function 1 43546 43785
ATE86082.1 MF158042_p15 DNA primase phrog_510 DNA primase DNA, RNA and nucleotide metabolism 1 7009 7947
ATE86137.1 MF158042_p70 hypothetical protein phrog_2373 DNA helicase DNA, RNA and nucleotide metabolism 1 45292 46875
ATE86131.1 MF158042_p64 hypothetical protein phrog_5684 unknown function unknown function 1 43325 43549
ATE86078.1 MF158042_p11 hypothetical protein phrog_6031 unknown function unknown function -1 3686 3886
ATE86123.1 MF158042_p56 hypothetical protein phrog_22569 unknown function unknown function -1 40369 40524
ATE86096.1 MF158042_p29 tail assembly protein phrog_32 tail assembly protein tail -1 20234 20815
ATE86070.1 MF158042_p3 hypothetical protein phrog_7411 unknown function unknown function -1 950 1180
ATE86079.1 MF158042_p12 nuclease phrog_824 unknown function unknown function -1 3963 4382
ATE86136.1 MF158042_p69 hypothetical protein singleton unknown function unknown function 1 45046 45231
ATE86103.1 MF158042_p36 tail protein phrog_584 major tail protein tail -1 26452 27102
ATE86130.1 MF158042_p63 hypothetical protein phrog_4841 unknown function unknown function -1 42074 42622
ATE86092.1 MF158042_p25 hypothetical protein phrog_425 membrane associated protein moron, auxiliary metabolic gene and host takeover -1 15214 15897
ATE86129.1 MF158042_p62 hypothetical protein singleton unknown function unknown function -1 41871 42074
ATE86125.1 MF158042_p58 hypothetical protein singleton unknown function unknown function -1 40712 40882
ATE86124.1 MF158042_p57 hypothetical protein singleton unknown function unknown function -1 40521 40673
ATE86114.1 MF158042_p47 prohead protease phrog_530 head maturation protease head and packaging -1 34159 35262
ATE86087.1 MF158042_p20 exodeoxyribonuclease IV phrog_412 exonuclease VIII DNA, RNA and nucleotide metabolism -1 11760 12728
ATE86135.1 MF158042_p68 hypothetical protein phrog_2684 unknown function unknown function 1 44696 45049
ATE86069.1 MF158042_p2 hypothetical protein phrog_4788 unknown function unknown function -1 576 749
ATE86090.1 MF158042_p23 superinfection exclusion protein phrog_1119 Cor superinfection exclusion protein moron, auxiliary metabolic gene and host takeover 1 14389 14610
ATE86115.1 MF158042_p48 portal protein phrog_146 portal protein head and packaging -1 35252 36529
ATE86097.1 MF158042_p30 tail protein phrog_30 minor tail protein tail -1 20796 21542
ATE86076.1 MF158042_p9 hypothetical protein phrog_2676 unknown function unknown function -1 3310 3531
ATE86116.1 MF158042_p49 hypothetical protein phrog_14592 virion structural protein head and packaging -1 36588 36914
ATE86073.1 MF158042_p6 hypothetical protein phrog_2817 unknown function unknown function -1 2681 2929
ATE86083.1 MF158042_p16 structural protein phrog_3918 tail fiber protein tail 1 8035 10293
ATE86098.1 MF158042_p31 tail tip protein phrog_18 minor tail protein tail -1 21554 22363