Genomic map of Shigella phage Sf16 (MF158043)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MF158043
Definition
Shigella phage Sf16, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Ounavirinae; Mooglevirus; unclassified Mooglevirus.
DB of origin
NUCCORE
Length
88580
Host Name
Shigella flexneri
Host domain
Bacteria
Is prophage?
undef
Number of proteins
134
%GC
39.01
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ATE86263.1 MF158043_p123 hypothetical protein phrog_2210 unknown function unknown function 1 83835 84035
ATE86239.1 MF158043_p99 hypothetical protein phrog_4532 unknown function unknown function 1 67834 68034
ATE86255.1 MF158043_p115 polynucleotide kinase phrog_3970 polynucleotide kinase other 1 80838 81509
ATE86161.1 MF158043_p21 hypothetical protein phrog_4385 unknown function unknown function -1 9698 9991
ATE86238.1 MF158043_p98 glutaredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 67599 67841
ATE86141.1 MF158043_p1 hypothetical protein phrog_4327 unknown function unknown function 1 91 498
ATE86249.1 MF158043_p109 nicotinate phosphoribosyltransferase phrog_448 nicotinamide phosphoribosyl transferase other 1 74183 76000
ATE86142.1 MF158043_p2 hypothetical protein phrog_9030 unknown function unknown function 1 584 832
ATE86157.1 MF158043_p17 hypothetical protein phrog_4459 unknown function unknown function -1 7731 7949
ATE86247.1 MF158043_p107 hypothetical protein phrog_4726 unknown function unknown function 1 72968 73246
ATE86262.1 MF158043_p122 hypothetical protein phrog_6082 unknown function unknown function 1 83581 83805
ATE86206.1 MF158043_p66 hypothetical protein phrog_4422 unknown function unknown function -1 46864 47379
ATE86234.1 MF158043_p94 hypothetical protein phrog_3358 unknown function unknown function 1 63577 63912
ATE86256.1 MF158043_p116 hypothetical protein phrog_2267 unknown function unknown function 1 81521 81985
ATE86243.1 MF158043_p103 hypothetical protein phrog_5082 unknown function unknown function 1 71554 71811
ATE86224.1 MF158043_p84 DNA primase/helicase, helicase subunit phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 56894 58885
ATE86154.1 MF158043_p14 hypothetical protein phrog_4457 unknown function unknown function -1 6948 7157
ATE86265.1 MF158043_p125 hypothetical protein phrog_15689 unknown function unknown function -1 84877 85110
ATE86191.1 MF158043_p51 hypothetical protein phrog_3721 unknown function unknown function 1 35053 35859
ATE86187.1 MF158043_p47 hypothetical protein phrog_280 virion structural protein head and packaging 1 31656 32102
ATE86169.1 MF158043_p29 hypothetical protein phrog_4114 unknown function unknown function 1 14011 14382
ATE86196.1 MF158043_p56 baseplate assembly protein phrog_6 baseplate wedge subunit tail 1 38231 39700
ATE86197.1 MF158043_p57 hypothetical protein phrog_4017 baseplate protein tail 1 39703 40560
ATE86194.1 MF158043_p54 hypothetical protein phrog_11 baseplate spike tail 1 37174 37815
ATE86171.1 MF158043_p31 HNH homing endonuclease phrog_2255 HNH endonuclease DNA, RNA and nucleotide metabolism 1 17896 18243
ATE86228.1 MF158043_p88 exodeoxyribonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 60281 61327
ATE86160.1 MF158043_p20 hypothetical protein phrog_4040 unknown function unknown function -1 9361 9705
ATE86212.1 MF158043_p72 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism -1 49350 50450
ATE86172.1 MF158043_p32 hypothetical protein phrog_10765 unknown function unknown function 1 19513 19725
ATE86217.1 MF158043_p77 hypothetical protein phrog_5180 unknown function unknown function -1 51254 51463
ATE86267.1 MF158043_p127 hypothetical protein phrog_14219 unknown function unknown function 1 85554 85715
ATE86244.1 MF158043_p104 hypothetical protein phrog_4425 unknown function unknown function 1 71827 72084
ATE86248.1 MF158043_p108 ribose-phosphate pyrophosphokinase phrog_619 ribose-phosphate pyrophosphokinase other 1 73257 74138
ATE86174.1 MF158043_p34 hypothetical protein phrog_4397 unknown function unknown function 1 21336 21542
ATE86258.1 MF158043_p118 o-spanin phrog_4180 unknown function unknown function 1 82351 82545
ATE86252.1 MF158043_p112 rIIA phrog_612 RIIA lysis inhibitor lysis 1 76613 78985
ATE86192.1 MF158043_p52 hypothetical protein phrog_349 virion structural protein head and packaging 1 35859 36200
ATE86211.1 MF158043_p71 hypothetical protein phrog_4332 unknown function unknown function -1 48728 49108
ATE86235.1 MF158043_p95 ribonucleotide reductase, large subunit phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism 1 63964 66198
ATE86203.1 MF158043_p63 thymidylate synthase phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism -1 45152 46051
ATE86269.1 MF158043_p129 hypothetical protein phrog_5089 unknown function unknown function 1 86272 86529
ATE86149.1 MF158043_p9 hypothetical protein phrog_4559 unknown function unknown function 1 3198 3449
ATE86271.1 MF158043_p131 hypothetical protein phrog_4401 unknown function unknown function 1 87217 87513
ATE86198.1 MF158043_p58 hypothetical protein phrog_4141 unknown function unknown function 1 40560 40859
ATE86200.1 MF158043_p60 tail fiber protein phrog_4277 tail fiber protein tail 1 42083 44461
ATE86156.1 MF158043_p16 hypothetical protein phrog_4343 unknown function unknown function -1 7228 7734
ATE86240.1 MF158043_p100 anaerobic ribonucleotide reductase, large subunit phrog_487 NrdD-like anaerobic ribonucleotide reductase large subunit moron, auxiliary metabolic gene and host takeover 1 68084 70228
ATE86165.1 MF158043_p25 tail protein phrog_3995 tail protein tail -1 11276 12394
ATE86162.1 MF158043_p22 hypothetical protein phrog_4348 unknown function unknown function -1 9993 10361
ATE86183.1 MF158043_p43 hypothetical protein phrog_222 tail completion or Neck1 protein connector 1 28834 29316
ATE86152.1 MF158043_p12 hypothetical protein phrog_9967 unknown function unknown function -1 6163 6459
ATE86225.1 MF158043_p85 hypothetical protein phrog_4982 unknown function unknown function 1 58860 59138
ATE86148.1 MF158043_p8 hypothetical protein phrog_7482 unknown function unknown function 1 2992 3132
ATE86167.1 MF158043_p27 hypothetical protein phrog_4034 unknown function unknown function -1 12803 13393
ATE86253.1 MF158043_p113 rIIB phrog_609 RIIB lysis inhibitor lysis 1 79065 80186
ATE86184.1 MF158043_p44 hypothetical protein phrog_2874 unknown function unknown function 1 29313 29714
ATE86259.1 MF158043_p119 hypothetical protein phrog_4391 unknown function unknown function 1 82545 82814
ATE86227.1 MF158043_p87 hypothetical protein phrog_3877 unknown function unknown function 1 59358 60218
ATE86260.1 MF158043_p120 hypothetical protein phrog_25740 unknown function unknown function 1 82818 83270
ATE86268.1 MF158043_p128 hypothetical protein phrog_4495 unknown function unknown function 1 85799 86179
ATE86254.1 MF158043_p114 hypothetical protein phrog_600 unknown function unknown function 1 80288 80836
ATE86166.1 MF158043_p26 hypothetical protein phrog_4463 unknown function unknown function -1 12391 12759
ATE86146.1 MF158043_p6 hypothetical protein phrog_13570 unknown function unknown function 1 2171 2368
ATE86195.1 MF158043_p55 hypothetical protein phrog_120 baseplate wedge subunit tail 1 37815 38231
ATE86170.1 MF158043_p30 hypothetical protein phrog_850 RNA-binding protein DNA, RNA and nucleotide metabolism 1 14461 15876
ATE86237.1 MF158043_p97 ribonucleotide reductase, small subunit phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism 1 66526 67599
ATE86229.1 MF158043_p89 HNH homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 61305 61796
ATE86155.1 MF158043_p15 hypothetical protein phrog_6279 unknown function unknown function -1 7154 7246
ATE86158.1 MF158043_p18 hypothetical protein phrog_5380 unknown function unknown function -1 7946 8695
ATE86182.1 MF158043_p42 hypothetical protein phrog_1732 unknown function unknown function 1 28385 28834
ATE86261.1 MF158043_p121 hypothetical protein phrog_4453 unknown function unknown function 1 83280 83606
ATE86242.1 MF158043_p102 anaerobic ribonucleotide reductase, small subunit phrog_626 anaerobic ribonucleotide reductase small subunit DNA, RNA and nucleotide metabolism 1 71043 71528
ATE86185.1 MF158043_p45 hypothetical protein phrog_4082 unknown function unknown function 1 29689 30288
ATE86274.1 MF158043_p134 hypothetical protein singleton unknown function unknown function 1 88276 88410
ATE86199.1 MF158043_p59 tail protein phrog_2097 tail fiber protein tail 1 40862 42037
ATE86144.1 MF158043_p4 hypothetical protein phrog_4640 unknown function unknown function 1 1538 1768
ATE86189.1 MF158043_p49 tail tape measure chaperone phrog_4963 tail assembly chaperone tail 1 32589 32816
ATE86233.1 MF158043_p93 hypothetical protein phrog_4007 unknown function unknown function 1 63258 63584
ATE86193.1 MF158043_p53 hypothetical protein phrog_196 baseplate hub tail 1 36200 37177
ATE86226.1 MF158043_p86 hypothetical protein phrog_4424 unknown function unknown function 1 59135 59272
ATE86230.1 MF158043_p90 GIY-YIG nuclease phrog_447 NAD synthetase other 1 61793 62296
ATE86168.1 MF158043_p28 hypothetical protein phrog_5064 unknown function unknown function -1 13387 13620
ATE86186.1 MF158043_p46 hypothetical protein phrog_205 tail sheath tail 1 30289 31641
ATE86218.1 MF158043_p78 hypothetical protein phrog_4230 unknown function unknown function -1 51460 51660
ATE86266.1 MF158043_p126 hypothetical protein phrog_5293 unknown function unknown function 1 85336 85542
ATE86153.1 MF158043_p13 hypothetical protein phrog_7193 unknown function unknown function -1 6462 6905
ATE86177.1 MF158043_p37 hypothetical protein phrog_3977 unknown function unknown function 1 24644 25144
ATE86245.1 MF158043_p105 HNH endonuclease phrog_4462 unknown function unknown function 1 72096 72407
ATE86219.1 MF158043_p79 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 51722 54421
ATE86270.1 MF158043_p130 hypothetical protein phrog_4190 unknown function unknown function 1 86621 87133
ATE86231.1 MF158043_p91 hypothetical protein phrog_4442 unknown function unknown function 1 62298 62513
ATE86223.1 MF158043_p83 hypothetical protein phrog_4469 unknown function unknown function 1 56701 56901
ATE86272.1 MF158043_p132 hypothetical protein phrog_4375 unknown function unknown function 1 87507 87854
ATE86190.1 MF158043_p50 tail tape measure protein phrog_4036 tail length tape measure protein tail 1 32816 35053
ATE86209.1 MF158043_p69 transcriptional regulatory protein phrog_1373 transcriptional regulator transcription regulation -1 48230 48529
ATE86220.1 MF158043_p80 hypothetical protein phrog_4039 unknown function unknown function 1 54681 55121
ATE86173.1 MF158043_p33 hypothetical protein phrog_2114 unknown function unknown function 1 20206 20940
ATE86273.1 MF158043_p133 hypothetical protein phrog_3436 unknown function unknown function 1 87913 88185
ATE86205.1 MF158043_p65 hypothetical protein phrog_2993 unknown function unknown function -1 46595 46834
ATE86151.1 MF158043_p11 hypothetical protein phrog_4713 unknown function unknown function -1 5712 6176
ATE86222.1 MF158043_p82 deoxynucleotide monophosphate kinase phrog_139 deoxynucleoside monophosphate kinase other 1 55957 56697
ATE86264.1 MF158043_p124 hypothetical protein phrog_335 phosphatase other 1 84037 84831
ATE86216.1 MF158043_p76 hypothetical protein phrog_9065 unknown function unknown function -1 51006 51257
ATE86181.1 MF158043_p41 major capsid protein phrog_29 major head protein head and packaging 1 27259 28362
ATE86208.1 MF158043_p68 hypothetical protein phrog_4116 unknown function unknown function -1 47869 48228
ATE86178.1 MF158043_p38 hypothetical protein phrog_240 head protein head and packaging 1 25144 25476
ATE86215.1 MF158043_p75 hypothetical protein phrog_902 unknown function unknown function -1 50750 50995
ATE86213.1 MF158043_p73 hypothetical protein phrog_20095 unknown function unknown function -1 50447 50545
ATE86214.1 MF158043_p74 hypothetical protein phrog_4427 unknown function unknown function -1 50542 50763
ATE86147.1 MF158043_p7 hypothetical protein phrog_4318 unknown function unknown function 1 2453 2794
ATE86176.1 MF158043_p36 hypothetical protein phrog_113 portal protein head and packaging 1 23178 24644
ATE86164.1 MF158043_p24 lysozyme phrog_7 endolysin lysis -1 10803 11267
ATE86236.1 MF158043_p96 hypothetical protein phrog_2652 unknown function unknown function 1 66254 66529
ATE86159.1 MF158043_p19 hypothetical protein phrog_4109 unknown function unknown function -1 8766 9359
ATE86210.1 MF158043_p70 hypothetical protein phrog_4473 unknown function unknown function -1 48522 48725
ATE86232.1 MF158043_p92 phosphoribosyl-ATP pyrophosphohydrolase-like protein phrog_2144 MazG-like pyrophosphatase other 1 62513 63277
ATE86179.1 MF158043_p39 prohead protease phrog_53 head maturation protease head and packaging 1 25488 26837
ATE86202.1 MF158043_p62 holin phrog_4038 unknown function unknown function 1 44742 45116
ATE86180.1 MF158043_p40 hypothetical protein phrog_4146 tail protease other 1 26850 27227
ATE86201.1 MF158043_p61 hypothetical protein phrog_402 unknown function unknown function 1 44548 44742
ATE86241.1 MF158043_p101 hypothetical protein phrog_4382 unknown function unknown function 1 70651 71043
ATE86250.1 MF158043_p110 hypothetical protein phrog_4262 unknown function unknown function 1 76054 76389
ATE86163.1 MF158043_p23 hypothetical protein phrog_4266 unknown function unknown function -1 10354 10752
ATE86150.1 MF158043_p10 hypothetical protein phrog_4330 unknown function unknown function -1 5044 5709
ATE86175.1 MF158043_p35 terminase large subunit phrog_979 terminase large subunit head and packaging 1 21564 23165
ATE86145.1 MF158043_p5 hypothetical protein phrog_10118 unknown function unknown function 1 1858 2079
ATE86251.1 MF158043_p111 hypothetical protein phrog_3931 unknown function unknown function 1 76371 76550
ATE86221.1 MF158043_p81 hypothetical protein phrog_4251 minor tail protein tail 1 55105 55899
ATE86204.1 MF158043_p64 dihydrofolate reductase phrog_316 dihydrofolate reductase DNA, RNA and nucleotide metabolism -1 46053 46598
ATE86246.1 MF158043_p106 hypothetical protein phrog_3500 unknown function unknown function 1 72460 72975
ATE86143.1 MF158043_p3 hypothetical protein phrog_3303 unknown function unknown function 1 917 1474
ATE86257.1 MF158043_p117 i-spanin phrog_1152 Rz-like spanin lysis 1 82038 82385
ATE86207.1 MF158043_p67 hypothetical protein phrog_9143 unknown function unknown function -1 47381 47884
ATE86188.1 MF158043_p48 tail tape measure chaperone phrog_1613 tail assembly chaperone tail 1 32179 32580