| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF158043 |
Definition |
Shigella phage Sf16, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Ounavirinae; Mooglevirus; unclassified Mooglevirus. |
DB of origin |
NUCCORE |
Length |
88580 |
Host Name |
Shigella flexneri |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
134 |
%GC |
39.01 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ATE86263.1 | MF158043_p123 | hypothetical protein | phrog_2210 | unknown function | unknown function | 1 | 83835 | 84035 |
| ATE86239.1 | MF158043_p99 | hypothetical protein | phrog_4532 | unknown function | unknown function | 1 | 67834 | 68034 |
| ATE86255.1 | MF158043_p115 | polynucleotide kinase | phrog_3970 | polynucleotide kinase | other | 1 | 80838 | 81509 |
| ATE86161.1 | MF158043_p21 | hypothetical protein | phrog_4385 | unknown function | unknown function | -1 | 9698 | 9991 |
| ATE86238.1 | MF158043_p98 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 67599 | 67841 |
| ATE86141.1 | MF158043_p1 | hypothetical protein | phrog_4327 | unknown function | unknown function | 1 | 91 | 498 |
| ATE86249.1 | MF158043_p109 | nicotinate phosphoribosyltransferase | phrog_448 | nicotinamide phosphoribosyl transferase | other | 1 | 74183 | 76000 |
| ATE86142.1 | MF158043_p2 | hypothetical protein | phrog_9030 | unknown function | unknown function | 1 | 584 | 832 |
| ATE86157.1 | MF158043_p17 | hypothetical protein | phrog_4459 | unknown function | unknown function | -1 | 7731 | 7949 |
| ATE86247.1 | MF158043_p107 | hypothetical protein | phrog_4726 | unknown function | unknown function | 1 | 72968 | 73246 |
| ATE86262.1 | MF158043_p122 | hypothetical protein | phrog_6082 | unknown function | unknown function | 1 | 83581 | 83805 |
| ATE86206.1 | MF158043_p66 | hypothetical protein | phrog_4422 | unknown function | unknown function | -1 | 46864 | 47379 |
| ATE86234.1 | MF158043_p94 | hypothetical protein | phrog_3358 | unknown function | unknown function | 1 | 63577 | 63912 |
| ATE86256.1 | MF158043_p116 | hypothetical protein | phrog_2267 | unknown function | unknown function | 1 | 81521 | 81985 |
| ATE86243.1 | MF158043_p103 | hypothetical protein | phrog_5082 | unknown function | unknown function | 1 | 71554 | 71811 |
| ATE86224.1 | MF158043_p84 | DNA primase/helicase, helicase subunit | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 56894 | 58885 |
| ATE86154.1 | MF158043_p14 | hypothetical protein | phrog_4457 | unknown function | unknown function | -1 | 6948 | 7157 |
| ATE86265.1 | MF158043_p125 | hypothetical protein | phrog_15689 | unknown function | unknown function | -1 | 84877 | 85110 |
| ATE86191.1 | MF158043_p51 | hypothetical protein | phrog_3721 | unknown function | unknown function | 1 | 35053 | 35859 |
| ATE86187.1 | MF158043_p47 | hypothetical protein | phrog_280 | virion structural protein | head and packaging | 1 | 31656 | 32102 |
| ATE86169.1 | MF158043_p29 | hypothetical protein | phrog_4114 | unknown function | unknown function | 1 | 14011 | 14382 |
| ATE86196.1 | MF158043_p56 | baseplate assembly protein | phrog_6 | baseplate wedge subunit | tail | 1 | 38231 | 39700 |
| ATE86197.1 | MF158043_p57 | hypothetical protein | phrog_4017 | baseplate protein | tail | 1 | 39703 | 40560 |
| ATE86194.1 | MF158043_p54 | hypothetical protein | phrog_11 | baseplate spike | tail | 1 | 37174 | 37815 |
| ATE86171.1 | MF158043_p31 | HNH homing endonuclease | phrog_2255 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 17896 | 18243 |
| ATE86228.1 | MF158043_p88 | exodeoxyribonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 60281 | 61327 |
| ATE86160.1 | MF158043_p20 | hypothetical protein | phrog_4040 | unknown function | unknown function | -1 | 9361 | 9705 |
| ATE86212.1 | MF158043_p72 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | -1 | 49350 | 50450 |
| ATE86172.1 | MF158043_p32 | hypothetical protein | phrog_10765 | unknown function | unknown function | 1 | 19513 | 19725 |
| ATE86217.1 | MF158043_p77 | hypothetical protein | phrog_5180 | unknown function | unknown function | -1 | 51254 | 51463 |
| ATE86267.1 | MF158043_p127 | hypothetical protein | phrog_14219 | unknown function | unknown function | 1 | 85554 | 85715 |
| ATE86244.1 | MF158043_p104 | hypothetical protein | phrog_4425 | unknown function | unknown function | 1 | 71827 | 72084 |
| ATE86248.1 | MF158043_p108 | ribose-phosphate pyrophosphokinase | phrog_619 | ribose-phosphate pyrophosphokinase | other | 1 | 73257 | 74138 |
| ATE86174.1 | MF158043_p34 | hypothetical protein | phrog_4397 | unknown function | unknown function | 1 | 21336 | 21542 |
| ATE86258.1 | MF158043_p118 | o-spanin | phrog_4180 | unknown function | unknown function | 1 | 82351 | 82545 |
| ATE86252.1 | MF158043_p112 | rIIA | phrog_612 | RIIA lysis inhibitor | lysis | 1 | 76613 | 78985 |
| ATE86192.1 | MF158043_p52 | hypothetical protein | phrog_349 | virion structural protein | head and packaging | 1 | 35859 | 36200 |
| ATE86211.1 | MF158043_p71 | hypothetical protein | phrog_4332 | unknown function | unknown function | -1 | 48728 | 49108 |
| ATE86235.1 | MF158043_p95 | ribonucleotide reductase, large subunit | phrog_84 | ribonucleoside-diphosphate reductase large subunit | DNA, RNA and nucleotide metabolism | 1 | 63964 | 66198 |
| ATE86203.1 | MF158043_p63 | thymidylate synthase | phrog_160 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 45152 | 46051 |
| ATE86269.1 | MF158043_p129 | hypothetical protein | phrog_5089 | unknown function | unknown function | 1 | 86272 | 86529 |
| ATE86149.1 | MF158043_p9 | hypothetical protein | phrog_4559 | unknown function | unknown function | 1 | 3198 | 3449 |
| ATE86271.1 | MF158043_p131 | hypothetical protein | phrog_4401 | unknown function | unknown function | 1 | 87217 | 87513 |
| ATE86198.1 | MF158043_p58 | hypothetical protein | phrog_4141 | unknown function | unknown function | 1 | 40560 | 40859 |
| ATE86200.1 | MF158043_p60 | tail fiber protein | phrog_4277 | tail fiber protein | tail | 1 | 42083 | 44461 |
| ATE86156.1 | MF158043_p16 | hypothetical protein | phrog_4343 | unknown function | unknown function | -1 | 7228 | 7734 |
| ATE86240.1 | MF158043_p100 | anaerobic ribonucleotide reductase, large subunit | phrog_487 | NrdD-like anaerobic ribonucleotide reductase large subunit | moron, auxiliary metabolic gene and host takeover | 1 | 68084 | 70228 |
| ATE86165.1 | MF158043_p25 | tail protein | phrog_3995 | tail protein | tail | -1 | 11276 | 12394 |
| ATE86162.1 | MF158043_p22 | hypothetical protein | phrog_4348 | unknown function | unknown function | -1 | 9993 | 10361 |
| ATE86183.1 | MF158043_p43 | hypothetical protein | phrog_222 | tail completion or Neck1 protein | connector | 1 | 28834 | 29316 |
| ATE86152.1 | MF158043_p12 | hypothetical protein | phrog_9967 | unknown function | unknown function | -1 | 6163 | 6459 |
| ATE86225.1 | MF158043_p85 | hypothetical protein | phrog_4982 | unknown function | unknown function | 1 | 58860 | 59138 |
| ATE86148.1 | MF158043_p8 | hypothetical protein | phrog_7482 | unknown function | unknown function | 1 | 2992 | 3132 |
| ATE86167.1 | MF158043_p27 | hypothetical protein | phrog_4034 | unknown function | unknown function | -1 | 12803 | 13393 |
| ATE86253.1 | MF158043_p113 | rIIB | phrog_609 | RIIB lysis inhibitor | lysis | 1 | 79065 | 80186 |
| ATE86184.1 | MF158043_p44 | hypothetical protein | phrog_2874 | unknown function | unknown function | 1 | 29313 | 29714 |
| ATE86259.1 | MF158043_p119 | hypothetical protein | phrog_4391 | unknown function | unknown function | 1 | 82545 | 82814 |
| ATE86227.1 | MF158043_p87 | hypothetical protein | phrog_3877 | unknown function | unknown function | 1 | 59358 | 60218 |
| ATE86260.1 | MF158043_p120 | hypothetical protein | phrog_25740 | unknown function | unknown function | 1 | 82818 | 83270 |
| ATE86268.1 | MF158043_p128 | hypothetical protein | phrog_4495 | unknown function | unknown function | 1 | 85799 | 86179 |
| ATE86254.1 | MF158043_p114 | hypothetical protein | phrog_600 | unknown function | unknown function | 1 | 80288 | 80836 |
| ATE86166.1 | MF158043_p26 | hypothetical protein | phrog_4463 | unknown function | unknown function | -1 | 12391 | 12759 |
| ATE86146.1 | MF158043_p6 | hypothetical protein | phrog_13570 | unknown function | unknown function | 1 | 2171 | 2368 |
| ATE86195.1 | MF158043_p55 | hypothetical protein | phrog_120 | baseplate wedge subunit | tail | 1 | 37815 | 38231 |
| ATE86170.1 | MF158043_p30 | hypothetical protein | phrog_850 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 14461 | 15876 |
| ATE86237.1 | MF158043_p97 | ribonucleotide reductase, small subunit | phrog_86 | ribonucleoside diphosphate reductase small subunit | DNA, RNA and nucleotide metabolism | 1 | 66526 | 67599 |
| ATE86229.1 | MF158043_p89 | HNH homing endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 61305 | 61796 |
| ATE86155.1 | MF158043_p15 | hypothetical protein | phrog_6279 | unknown function | unknown function | -1 | 7154 | 7246 |
| ATE86158.1 | MF158043_p18 | hypothetical protein | phrog_5380 | unknown function | unknown function | -1 | 7946 | 8695 |
| ATE86182.1 | MF158043_p42 | hypothetical protein | phrog_1732 | unknown function | unknown function | 1 | 28385 | 28834 |
| ATE86261.1 | MF158043_p121 | hypothetical protein | phrog_4453 | unknown function | unknown function | 1 | 83280 | 83606 |
| ATE86242.1 | MF158043_p102 | anaerobic ribonucleotide reductase, small subunit | phrog_626 | anaerobic ribonucleotide reductase small subunit | DNA, RNA and nucleotide metabolism | 1 | 71043 | 71528 |
| ATE86185.1 | MF158043_p45 | hypothetical protein | phrog_4082 | unknown function | unknown function | 1 | 29689 | 30288 |
| ATE86274.1 | MF158043_p134 | hypothetical protein | singleton | unknown function | unknown function | 1 | 88276 | 88410 |
| ATE86199.1 | MF158043_p59 | tail protein | phrog_2097 | tail fiber protein | tail | 1 | 40862 | 42037 |
| ATE86144.1 | MF158043_p4 | hypothetical protein | phrog_4640 | unknown function | unknown function | 1 | 1538 | 1768 |
| ATE86189.1 | MF158043_p49 | tail tape measure chaperone | phrog_4963 | tail assembly chaperone | tail | 1 | 32589 | 32816 |
| ATE86233.1 | MF158043_p93 | hypothetical protein | phrog_4007 | unknown function | unknown function | 1 | 63258 | 63584 |
| ATE86193.1 | MF158043_p53 | hypothetical protein | phrog_196 | baseplate hub | tail | 1 | 36200 | 37177 |
| ATE86226.1 | MF158043_p86 | hypothetical protein | phrog_4424 | unknown function | unknown function | 1 | 59135 | 59272 |
| ATE86230.1 | MF158043_p90 | GIY-YIG nuclease | phrog_447 | NAD synthetase | other | 1 | 61793 | 62296 |
| ATE86168.1 | MF158043_p28 | hypothetical protein | phrog_5064 | unknown function | unknown function | -1 | 13387 | 13620 |
| ATE86186.1 | MF158043_p46 | hypothetical protein | phrog_205 | tail sheath | tail | 1 | 30289 | 31641 |
| ATE86218.1 | MF158043_p78 | hypothetical protein | phrog_4230 | unknown function | unknown function | -1 | 51460 | 51660 |
| ATE86266.1 | MF158043_p126 | hypothetical protein | phrog_5293 | unknown function | unknown function | 1 | 85336 | 85542 |
| ATE86153.1 | MF158043_p13 | hypothetical protein | phrog_7193 | unknown function | unknown function | -1 | 6462 | 6905 |
| ATE86177.1 | MF158043_p37 | hypothetical protein | phrog_3977 | unknown function | unknown function | 1 | 24644 | 25144 |
| ATE86245.1 | MF158043_p105 | HNH endonuclease | phrog_4462 | unknown function | unknown function | 1 | 72096 | 72407 |
| ATE86219.1 | MF158043_p79 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 51722 | 54421 |
| ATE86270.1 | MF158043_p130 | hypothetical protein | phrog_4190 | unknown function | unknown function | 1 | 86621 | 87133 |
| ATE86231.1 | MF158043_p91 | hypothetical protein | phrog_4442 | unknown function | unknown function | 1 | 62298 | 62513 |
| ATE86223.1 | MF158043_p83 | hypothetical protein | phrog_4469 | unknown function | unknown function | 1 | 56701 | 56901 |
| ATE86272.1 | MF158043_p132 | hypothetical protein | phrog_4375 | unknown function | unknown function | 1 | 87507 | 87854 |
| ATE86190.1 | MF158043_p50 | tail tape measure protein | phrog_4036 | tail length tape measure protein | tail | 1 | 32816 | 35053 |
| ATE86209.1 | MF158043_p69 | transcriptional regulatory protein | phrog_1373 | transcriptional regulator | transcription regulation | -1 | 48230 | 48529 |
| ATE86220.1 | MF158043_p80 | hypothetical protein | phrog_4039 | unknown function | unknown function | 1 | 54681 | 55121 |
| ATE86173.1 | MF158043_p33 | hypothetical protein | phrog_2114 | unknown function | unknown function | 1 | 20206 | 20940 |
| ATE86273.1 | MF158043_p133 | hypothetical protein | phrog_3436 | unknown function | unknown function | 1 | 87913 | 88185 |
| ATE86205.1 | MF158043_p65 | hypothetical protein | phrog_2993 | unknown function | unknown function | -1 | 46595 | 46834 |
| ATE86151.1 | MF158043_p11 | hypothetical protein | phrog_4713 | unknown function | unknown function | -1 | 5712 | 6176 |
| ATE86222.1 | MF158043_p82 | deoxynucleotide monophosphate kinase | phrog_139 | deoxynucleoside monophosphate kinase | other | 1 | 55957 | 56697 |
| ATE86264.1 | MF158043_p124 | hypothetical protein | phrog_335 | phosphatase | other | 1 | 84037 | 84831 |
| ATE86216.1 | MF158043_p76 | hypothetical protein | phrog_9065 | unknown function | unknown function | -1 | 51006 | 51257 |
| ATE86181.1 | MF158043_p41 | major capsid protein | phrog_29 | major head protein | head and packaging | 1 | 27259 | 28362 |
| ATE86208.1 | MF158043_p68 | hypothetical protein | phrog_4116 | unknown function | unknown function | -1 | 47869 | 48228 |
| ATE86178.1 | MF158043_p38 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 25144 | 25476 |
| ATE86215.1 | MF158043_p75 | hypothetical protein | phrog_902 | unknown function | unknown function | -1 | 50750 | 50995 |
| ATE86213.1 | MF158043_p73 | hypothetical protein | phrog_20095 | unknown function | unknown function | -1 | 50447 | 50545 |
| ATE86214.1 | MF158043_p74 | hypothetical protein | phrog_4427 | unknown function | unknown function | -1 | 50542 | 50763 |
| ATE86147.1 | MF158043_p7 | hypothetical protein | phrog_4318 | unknown function | unknown function | 1 | 2453 | 2794 |
| ATE86176.1 | MF158043_p36 | hypothetical protein | phrog_113 | portal protein | head and packaging | 1 | 23178 | 24644 |
| ATE86164.1 | MF158043_p24 | lysozyme | phrog_7 | endolysin | lysis | -1 | 10803 | 11267 |
| ATE86236.1 | MF158043_p96 | hypothetical protein | phrog_2652 | unknown function | unknown function | 1 | 66254 | 66529 |
| ATE86159.1 | MF158043_p19 | hypothetical protein | phrog_4109 | unknown function | unknown function | -1 | 8766 | 9359 |
| ATE86210.1 | MF158043_p70 | hypothetical protein | phrog_4473 | unknown function | unknown function | -1 | 48522 | 48725 |
| ATE86232.1 | MF158043_p92 | phosphoribosyl-ATP pyrophosphohydrolase-like protein | phrog_2144 | MazG-like pyrophosphatase | other | 1 | 62513 | 63277 |
| ATE86179.1 | MF158043_p39 | prohead protease | phrog_53 | head maturation protease | head and packaging | 1 | 25488 | 26837 |
| ATE86202.1 | MF158043_p62 | holin | phrog_4038 | unknown function | unknown function | 1 | 44742 | 45116 |
| ATE86180.1 | MF158043_p40 | hypothetical protein | phrog_4146 | tail protease | other | 1 | 26850 | 27227 |
| ATE86201.1 | MF158043_p61 | hypothetical protein | phrog_402 | unknown function | unknown function | 1 | 44548 | 44742 |
| ATE86241.1 | MF158043_p101 | hypothetical protein | phrog_4382 | unknown function | unknown function | 1 | 70651 | 71043 |
| ATE86250.1 | MF158043_p110 | hypothetical protein | phrog_4262 | unknown function | unknown function | 1 | 76054 | 76389 |
| ATE86163.1 | MF158043_p23 | hypothetical protein | phrog_4266 | unknown function | unknown function | -1 | 10354 | 10752 |
| ATE86150.1 | MF158043_p10 | hypothetical protein | phrog_4330 | unknown function | unknown function | -1 | 5044 | 5709 |
| ATE86175.1 | MF158043_p35 | terminase large subunit | phrog_979 | terminase large subunit | head and packaging | 1 | 21564 | 23165 |
| ATE86145.1 | MF158043_p5 | hypothetical protein | phrog_10118 | unknown function | unknown function | 1 | 1858 | 2079 |
| ATE86251.1 | MF158043_p111 | hypothetical protein | phrog_3931 | unknown function | unknown function | 1 | 76371 | 76550 |
| ATE86221.1 | MF158043_p81 | hypothetical protein | phrog_4251 | minor tail protein | tail | 1 | 55105 | 55899 |
| ATE86204.1 | MF158043_p64 | dihydrofolate reductase | phrog_316 | dihydrofolate reductase | DNA, RNA and nucleotide metabolism | -1 | 46053 | 46598 |
| ATE86246.1 | MF158043_p106 | hypothetical protein | phrog_3500 | unknown function | unknown function | 1 | 72460 | 72975 |
| ATE86143.1 | MF158043_p3 | hypothetical protein | phrog_3303 | unknown function | unknown function | 1 | 917 | 1474 |
| ATE86257.1 | MF158043_p117 | i-spanin | phrog_1152 | Rz-like spanin | lysis | 1 | 82038 | 82385 |
| ATE86207.1 | MF158043_p67 | hypothetical protein | phrog_9143 | unknown function | unknown function | -1 | 47381 | 47884 |
| ATE86188.1 | MF158043_p48 | tail tape measure chaperone | phrog_1613 | tail assembly chaperone | tail | 1 | 32179 | 32580 |