Genomic map of Shigella phage Sf18 (MF158044)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MF158044
Definition
Shigella phage Sf18, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Ounavirinae; Mooglevirus; unclassified Mooglevirus.
DB of origin
NUCCORE
Length
90270
Host Name
Shigella flexneri
Host domain
Bacteria
Is prophage?
undef
Number of proteins
136
%GC
39
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ATE86395.1 MF158044_p121 hypothetical protein phrog_1732 unknown function unknown function 1 78539 78988
ATE86350.1 MF158044_p76 hypothetical protein phrog_4401 unknown function unknown function 1 48712 49008
ATE86349.1 MF158044_p75 hypothetical protein phrog_4190 unknown function unknown function 1 48115 48627
ATE86304.1 MF158044_p30 hypothetical protein phrog_4469 unknown function unknown function 1 18945 19145
ATE86386.1 MF158044_p112 hypothetical protein phrog_2114 unknown function unknown function 1 70363 71097
ATE86398.1 MF158044_p124 hypothetical protein phrog_4082 unknown function unknown function 1 79843 80442
ATE86403.1 MF158044_p129 tail length tape measure protein phrog_4036 tail length tape measure protein tail 1 82970 85207
ATE86353.1 MF158044_p79 hypothetical protein phrog_4327 unknown function unknown function 1 49719 50126
ATE86311.1 MF158044_p37 hypothetical protein phrog_4442 unknown function unknown function 1 24057 24272
ATE86373.1 MF158044_p99 hypothetical protein phrog_4109 unknown function unknown function -1 59296 59889
ATE86281.1 MF158044_p7 dTMP synthase phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism -1 5453 6352
ATE86283.1 MF158044_p9 hypothetical protein phrog_2993 unknown function unknown function -1 6896 7135
ATE86301.1 MF158044_p27 hypothetical protein phrog_4039 unknown function unknown function 1 16925 17365
ATE86405.1 MF158044_p131 hypothetical protein phrog_349 virion structural protein head and packaging 1 86013 86354
ATE86289.1 MF158044_p15 hypothetical protein phrog_4332 unknown function unknown function -1 9029 9409
ATE86372.1 MF158044_p98 hypothetical protein phrog_5380 unknown function unknown function -1 58484 59224
ATE86290.1 MF158044_p16 hypothetical protein phrog_5926 unknown function unknown function -1 9767 10207
ATE86341.1 MF158044_p67 hypothetical protein phrog_4453 unknown function unknown function 1 44797 45123
ATE86303.1 MF158044_p29 deoxynucleoside monophosphate kinase phrog_139 deoxynucleoside monophosphate kinase other 1 18201 18941
ATE86399.1 MF158044_p125 hypothetical protein phrog_205 tail sheath tail 1 80443 81795
ATE86321.1 MF158044_p47 hypothetical protein phrog_4382 unknown function unknown function 1 32402 32794
ATE86294.1 MF158044_p20 hypothetical protein phrog_902 unknown function unknown function -1 12683 12928
ATE86376.1 MF158044_p102 hypothetical protein phrog_4348 unknown function unknown function -1 60523 60903
ATE86329.1 MF158044_p55 nicotinamide phosphoribosyltransferase phrog_448 nicotinamide phosphoribosyl transferase other 1 35944 37761
ATE86352.1 MF158044_p78 hypothetical protein phrog_3436 unknown function unknown function 1 49324 49629
ATE86396.1 MF158044_p122 hypothetical protein phrog_222 tail completion or Neck1 protein connector 1 79036 79470
ATE86308.1 MF158044_p34 hypothetical protein phrog_3877 unknown function unknown function 1 21602 22462
ATE86309.1 MF158044_p35 exodeoxyribonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 22525 23565
ATE86292.1 MF158044_p18 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism -1 11378 12478
ATE86343.1 MF158044_p69 hypothetical protein phrog_2210 unknown function unknown function 1 45327 45527
ATE86286.1 MF158044_p12 hypothetical protein phrog_4116 unknown function unknown function -1 8170 8529
ATE86310.1 MF158044_p36 endonuclease phrog_447 NAD synthetase other 1 23555 24055
ATE86277.1 MF158044_p3 tail fiber protein phrog_2097 tail fiber protein tail 1 1162 2337
ATE86363.1 MF158044_p89 membrane protein phrog_4559 unknown function unknown function 1 53720 53971
ATE86327.1 MF158044_p53 hypothetical protein phrog_4726 unknown function unknown function 1 34727 35005
ATE86305.1 MF158044_p31 DNA primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 19138 21129
ATE86407.1 MF158044_p133 hypothetical protein phrog_11 baseplate spike tail 1 87328 87969
ATE86397.1 MF158044_p123 hypothetical protein phrog_2874 unknown function unknown function 1 79467 79868
ATE86320.1 MF158044_p46 anaerobic ribonucleotide reductase, large subunit phrog_487 NrdD-like anaerobic ribonucleotide reductase large subunit moron, auxiliary metabolic gene and host takeover 1 29834 31978
ATE86302.1 MF158044_p28 hypothetical protein phrog_4251 minor tail protein tail 1 17349 18143
ATE86278.1 MF158044_p4 tail fiber protein phrog_4277 tail fiber protein tail 1 2383 4761
ATE86317.1 MF158044_p43 ribonucleoside triphosphate reductase, small subunit phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism 1 28276 29349
ATE86394.1 MF158044_p120 major capsid protein phrog_29 major head protein head and packaging 1 77413 78516
ATE86325.1 MF158044_p51 endonuclease phrog_4462 unknown function unknown function 1 33855 34166
ATE86392.1 MF158044_p118 head maturation protease phrog_53 head maturation protease head and packaging 1 75645 76991
ATE86344.1 MF158044_p70 macro domain-containing protein phrog_335 phosphatase other 1 45529 46323
ATE86366.1 MF158044_p92 hypothetical protein phrog_9967 unknown function unknown function -1 56701 56997
ATE86275.1 MF158044_p1 hypothetical protein phrog_4017 baseplate protein tail 1 3 860
ATE86280.1 MF158044_p6 holin phrog_4038 unknown function unknown function 1 5042 5416
ATE86354.1 MF158044_p80 hypothetical protein phrog_23636 unknown function unknown function 1 50199 50447
ATE86379.1 MF158044_p105 hypothetical protein phrog_3995 tail protein tail -1 61812 62696
ATE86342.1 MF158044_p68 hypothetical protein phrog_6082 unknown function unknown function 1 45098 45334
ATE86356.1 MF158044_p82 hypothetical protein phrog_4640 unknown function unknown function 1 51154 51384
ATE86358.1 MF158044_p84 hypothetical protein phrog_13570 unknown function unknown function 1 51776 51973
ATE86361.1 MF158044_p87 hypothetical protein phrog_4725 unknown function unknown function 1 52803 53330
ATE86381.1 MF158044_p107 hypothetical protein phrog_4034 unknown function unknown function -1 63105 63695
ATE86299.1 MF158044_p25 hypothetical protein phrog_4230 unknown function unknown function -1 13704 13904
ATE86315.1 MF158044_p41 ribonucleoside triphosphate reductase, large subunit phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism 1 25714 27948
ATE86284.1 MF158044_p10 hypothetical protein phrog_4422 unknown function unknown function -1 7165 7680
ATE86282.1 MF158044_p8 dihydrofolate reductase phrog_316 dihydrofolate reductase DNA, RNA and nucleotide metabolism -1 6354 6899
ATE86279.1 MF158044_p5 hypothetical protein phrog_402 unknown function unknown function 1 4848 5042
ATE86410.1 MF158044_p136 baseplate assembly protein phrog_6 baseplate wedge subunit tail 1 89314 90270
ATE86369.1 MF158044_p95 hypothetical protein phrog_6279 unknown function unknown function -1 57692 57784
ATE86384.1 MF158044_p110 hypothetical protein phrog_850 RNA-binding protein DNA, RNA and nucleotide metabolism 1 64763 66178
ATE86370.1 MF158044_p96 hypothetical protein phrog_4343 unknown function unknown function -1 57766 58272
ATE86293.1 MF158044_p19 hypothetical protein phrog_4427 unknown function unknown function -1 12475 12681
ATE86389.1 MF158044_p115 hypothetical protein phrog_113 portal protein head and packaging 1 73335 74801
ATE86338.1 MF158044_p64 i-spanin phrog_1152 Rz-like spanin lysis 1 44011 44358
ATE86393.1 MF158044_p119 hypothetical protein phrog_4146 tail protease other 1 77004 77381
ATE86285.1 MF158044_p11 hypothetical protein phrog_9143 unknown function unknown function -1 7682 8185
ATE86374.1 MF158044_p100 hypothetical protein phrog_4040 unknown function unknown function -1 59891 60235
ATE86307.1 MF158044_p33 hypothetical protein phrog_4424 unknown function unknown function 1 21379 21516
ATE86318.1 MF158044_p44 glutaredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 29349 29591
ATE86323.1 MF158044_p49 hypothetical protein phrog_5082 unknown function unknown function 1 33305 33562
ATE86402.1 MF158044_p128 tape measure chaperone phrog_4963 tail assembly chaperone tail 1 82743 82970
ATE86313.1 MF158044_p39 deoxyribonucleoside reductase phrog_4007 unknown function unknown function 1 25008 25334
ATE86348.1 MF158044_p74 hypothetical protein phrog_5089 unknown function unknown function 1 47766 48023
ATE86339.1 MF158044_p65 o-spanin phrog_4180 unknown function unknown function 1 44324 44518
ATE86362.1 MF158044_p88 hypothetical protein phrog_7022 unknown function unknown function 1 53391 53654
ATE86316.1 MF158044_p42 hypothetical protein phrog_2652 unknown function unknown function 1 28082 28279
ATE86314.1 MF158044_p40 hypothetical protein phrog_3358 unknown function unknown function 1 25327 25662
ATE86319.1 MF158044_p45 hypothetical protein phrog_4532 unknown function unknown function 1 29584 29784
ATE86346.1 MF158044_p72 hypothetical protein phrog_14219 unknown function unknown function 1 47046 47204
ATE86387.1 MF158044_p113 hypothetical protein phrog_4397 unknown function unknown function 1 71493 71699
ATE86334.1 MF158044_p60 rIIB phrog_609 RIIB lysis inhibitor lysis 1 41038 42159
ATE86383.1 MF158044_p109 hypothetical protein phrog_4114 unknown function unknown function 1 64313 64684
ATE86291.1 MF158044_p17 hypothetical protein phrog_4652 unknown function unknown function -1 10210 10797
ATE86355.1 MF158044_p81 hypothetical protein phrog_3303 unknown function unknown function 1 50533 51090
ATE86330.1 MF158044_p56 hypothetical protein phrog_2375 unknown function unknown function 1 37815 38030
ATE86382.1 MF158044_p108 hypothetical protein phrog_5064 unknown function unknown function -1 63689 63922
ATE86404.1 MF158044_p130 hypothetical protein phrog_3721 unknown function unknown function 1 85207 86013
ATE86365.1 MF158044_p91 hypothetical protein phrog_4713 unknown function unknown function -1 56280 56714
ATE86326.1 MF158044_p52 hypothetical protein phrog_3500 unknown function unknown function 1 34219 34734
ATE86312.1 MF158044_p38 phosphoribosyl-ATP pyrophosphohydrolase-like protein phrog_2144 MazG-like pyrophosphatase other 1 24272 25027
ATE86300.1 MF158044_p26 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 13966 16665
ATE86388.1 MF158044_p114 terminase large subunit phrog_979 terminase large subunit head and packaging 1 71721 73322
ATE86336.1 MF158044_p62 polynucleotide kinase phrog_3970 polynucleotide kinase other 1 42787 43482
ATE86401.1 MF158044_p127 tape measure chaperone phrog_1613 tail assembly chaperone tail 1 82333 82734
ATE86287.1 MF158044_p13 helix-turn-helix transcriptional regulator phrog_1373 transcriptional regulator transcription regulation -1 8531 8830
ATE86357.1 MF158044_p83 hypothetical protein phrog_10118 unknown function unknown function 1 51385 51684
ATE86380.1 MF158044_p106 hypothetical protein phrog_4463 unknown function unknown function -1 62693 63061
ATE86385.1 MF158044_p111 hypothetical protein phrog_14202 unknown function unknown function 1 69691 69918
ATE86364.1 MF158044_p90 hypothetical protein phrog_4330 unknown function unknown function -1 55612 56277
ATE86295.1 MF158044_p21 hypothetical protein phrog_9065 unknown function unknown function -1 12939 13190
ATE86333.1 MF158044_p59 rIIA phrog_612 RIIA lysis inhibitor lysis 1 38586 40958
ATE86359.1 MF158044_p85 hypothetical protein phrog_4318 unknown function unknown function 1 52059 52400
ATE86298.1 MF158044_p24 hypothetical protein phrog_5180 unknown function unknown function -1 13498 13707
ATE86367.1 MF158044_p93 hypothetical protein phrog_7193 unknown function unknown function -1 57000 57443
ATE86371.1 MF158044_p97 hypothetical protein phrog_4459 unknown function unknown function -1 58269 58487
ATE86347.1 MF158044_p73 hypothetical protein phrog_4495 unknown function unknown function 1 47294 47674
ATE86406.1 MF158044_p132 hypothetical protein phrog_196 baseplate hub tail 1 86354 87331
ATE86345.1 MF158044_p71 hypothetical protein phrog_5293 unknown function unknown function 1 46828 47034
ATE86351.1 MF158044_p77 hypothetical protein phrog_4375 unknown function unknown function 1 49002 49349
ATE86340.1 MF158044_p66 hypothetical protein phrog_4391 unknown function unknown function 1 44518 44787
ATE86288.1 MF158044_p14 hypothetical protein phrog_4473 unknown function unknown function -1 8823 9026
ATE86400.1 MF158044_p126 hypothetical protein phrog_280 virion structural protein head and packaging 1 81810 82256
ATE86276.1 MF158044_p2 hypothetical protein phrog_4141 unknown function unknown function 1 860 1159
ATE86331.1 MF158044_p57 hypothetical protein phrog_4262 unknown function unknown function 1 38027 38362
ATE86375.1 MF158044_p101 hypothetical protein phrog_4385 unknown function unknown function -1 60228 60521
ATE86332.1 MF158044_p58 hypothetical protein phrog_3931 unknown function unknown function 1 38344 38523
ATE86337.1 MF158044_p63 hypothetical protein phrog_2267 unknown function unknown function 1 43494 43958
ATE86409.1 MF158044_p135 baseplate assembly protein phrog_6 baseplate wedge subunit tail 1 88385 89392
ATE86378.1 MF158044_p104 lysozyme phrog_7 endolysin lysis -1 61345 61809
ATE86368.1 MF158044_p94 hypothetical protein phrog_4457 unknown function unknown function -1 57486 57695
ATE86391.1 MF158044_p117 hypothetical protein phrog_240 head protein head and packaging 1 75301 75633
ATE86296.1 MF158044_p22 hypothetical protein phrog_2381 unknown function unknown function -1 13180 13323
ATE86377.1 MF158044_p103 hypothetical protein phrog_4266 unknown function unknown function -1 60896 61306
ATE86360.1 MF158044_p86 membrane protein phrog_7482 unknown function unknown function 1 52598 52738
ATE86328.1 MF158044_p54 ribose-phosphate pyrophosphokinase phrog_619 ribose-phosphate pyrophosphokinase other 1 35018 35899
ATE86335.1 MF158044_p61 lysozyme domain-containing protein phrog_600 unknown function unknown function 1 42261 42809
ATE86322.1 MF158044_p48 anaerobic ribonucleotide reductase, small subunit phrog_626 anaerobic ribonucleotide reductase small subunit DNA, RNA and nucleotide metabolism 1 32794 33279
ATE86390.1 MF158044_p116 hypothetical protein phrog_3977 unknown function unknown function 1 74801 75301
ATE86324.1 MF158044_p50 hypothetical protein phrog_4425 unknown function unknown function 1 33580 33843
ATE86297.1 MF158044_p23 hypothetical protein phrog_3474 unknown function unknown function -1 13310 13501
ATE86408.1 MF158044_p134 hypothetical protein phrog_120 baseplate wedge subunit tail 1 87969 88385
ATE86306.1 MF158044_p32 hypothetical protein phrog_4982 unknown function unknown function 1 21104 21382