| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF185717 |
Definition |
Mycobacterium phage AlleyCat, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Timquatrovirus; unclassified Timquatrovirus. |
DB of origin |
NUCCORE |
Length |
62112 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
99 |
%GC |
65.34 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ASM62552.1 | MF185717_p45 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35388 | 35513 |
| ASM62594.1 | MF185717_p87 | hypothetical protein | phrog_20186 | unknown function | unknown function | 1 | 56094 | 56273 |
| ASM62533.1 | MF185717_p26 | hypothetical protein | phrog_10753 | unknown function | unknown function | 1 | 23707 | 23991 |
| ASM62518.1 | MF185717_p11 | head-to-tail connector protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 9056 | 9439 |
| ASM62522.1 | MF185717_p15 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 10500 | 11111 |
| ASM62580.1 | MF185717_p73 | hypothetical protein | phrog_2869 | unknown function | unknown function | 1 | 49309 | 49506 |
| ASM62583.1 | MF185717_p76 | hypothetical protein | phrog_9980 | unknown function | unknown function | 1 | 50302 | 50883 |
| ASM62595.1 | MF185717_p88 | hypothetical protein | phrog_9985 | unknown function | unknown function | 1 | 56337 | 56615 |
| ASM62601.1 | MF185717_p94 | hypothetical protein | phrog_8588 | unknown function | unknown function | 1 | 59800 | 60111 |
| ASM62544.1 | MF185717_p37 | hydrolase | phrog_21189 | hydrolase | other | -1 | 31071 | 31202 |
| ASM62557.1 | MF185717_p50 | hypothetical protein | phrog_9124 | unknown function | unknown function | 1 | 37492 | 37716 |
| ASM62605.1 | MF185717_p98 | hypothetical protein | phrog_10816 | unknown function | unknown function | 1 | 61513 | 61695 |
| ASM62531.1 | MF185717_p24 | minor tail protein | phrog_1736 | minor tail protein | tail | 1 | 20892 | 21209 |
| ASM62581.1 | MF185717_p74 | hypothetical protein | phrog_3868 | unknown function | unknown function | 1 | 49520 | 50002 |
| ASM62551.1 | MF185717_p44 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35158 | 35391 |
| ASM62558.1 | MF185717_p51 | hypothetical protein | phrog_1956 | unknown function | unknown function | 1 | 37713 | 37991 |
| ASM62603.1 | MF185717_p96 | hypothetical protein | phrog_10342 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 60311 | 60703 |
| ASM62588.1 | MF185717_p81 | hypothetical protein | phrog_2493 | unknown function | unknown function | 1 | 53522 | 54193 |
| ASM62521.1 | MF185717_p14 | head-to-tail connector protein | phrog_123 | tail terminator | connector | 1 | 10036 | 10458 |
| ASM62600.1 | MF185717_p93 | hypothetical protein | phrog_6842 | unknown function | unknown function | 1 | 59367 | 59699 |
| ASM62508.1 | MF185717_p1 | hypothetical protein | phrog_10556 | unknown function | unknown function | 1 | 55 | 303 |
| ASM62565.1 | MF185717_p58 | hypothetical protein | phrog_1581 | unknown function | unknown function | 1 | 39910 | 40122 |
| ASM62582.1 | MF185717_p75 | hypothetical protein | phrog_8324 | unknown function | unknown function | 1 | 49999 | 50232 |
| ASM62525.1 | MF185717_p18 | tape measure protein | phrog_971 | endolysin | lysis | 1 | 12112 | 16224 |
| ASM62577.1 | MF185717_p70 | hypothetical protein | phrog_2342 | unknown function | unknown function | 1 | 47878 | 48732 |
| ASM62606.1 | MF185717_p99 | HNH endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 61692 | 61997 |
| ASM62586.1 | MF185717_p79 | hypothetical protein | phrog_2822 | unknown function | unknown function | 1 | 52608 | 53252 |
| ASM62510.1 | MF185717_p3 | hypothetical protein | phrog_2293 | unknown function | unknown function | 1 | 542 | 772 |
| ASM62515.1 | MF185717_p8 | hypothetical protein | phrog_1757 | unknown function | unknown function | 1 | 7021 | 7221 |
| ASM62599.1 | MF185717_p92 | hypothetical protein | phrog_7638 | unknown function | unknown function | 1 | 58281 | 59156 |
| ASM62539.1 | MF185717_p32 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 28365 | 28694 |
| ASM62598.1 | MF185717_p91 | hypothetical protein | phrog_2974 | unknown function | unknown function | 1 | 57918 | 58163 |
| ASM62535.1 | MF185717_p28 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 25101 | 25499 |
| ASM62593.1 | MF185717_p86 | queuine tRNA-ribosyltransferase | phrog_1279 | queuine tRNA-ribosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 55143 | 56027 |
| ASM62576.1 | MF185717_p69 | hypothetical protein | phrog_11424 | unknown function | unknown function | 1 | 47717 | 47881 |
| ASM62570.1 | MF185717_p63 | HNH endonuclease | phrog_1571 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 41814 | 42194 |
| ASM62556.1 | MF185717_p49 | hypothetical protein | phrog_301 | secreted protein | other | 1 | 37151 | 37489 |
| ASM62538.1 | MF185717_p31 | holin | phrog_565 | holin | lysis | 1 | 27916 | 28368 |
| ASM62520.1 | MF185717_p13 | head-to-tail connector protein | phrog_387 | neck protein | connector | 1 | 9830 | 10039 |
| ASM62548.1 | MF185717_p41 | immunity repressor | phrog_1746 | transcriptional repressor | transcription regulation | -1 | 33980 | 34384 |
| ASM62568.1 | MF185717_p61 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 41081 | 41329 |
| ASM62604.1 | MF185717_p97 | hypothetical protein | phrog_12460 | unknown function | unknown function | 1 | 61228 | 61500 |
| ASM62541.1 | MF185717_p34 | hypothetical protein | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 28929 | 30143 |
| ASM62509.1 | MF185717_p2 | hypothetical protein | phrog_2074 | unknown function | unknown function | 1 | 300 | 545 |
| ASM62597.1 | MF185717_p90 | hypothetical protein | phrog_2433 | unknown function | unknown function | 1 | 57150 | 57836 |
| ASM62571.1 | MF185717_p64 | DNA primase/polymerase | phrog_10729 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 42225 | 44393 |
| ASM62550.1 | MF185717_p43 | hypothetical protein | phrog_2908 | unknown function | unknown function | 1 | 34871 | 35161 |
| ASM62513.1 | MF185717_p6 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2788 | 4326 |
| ASM62536.1 | MF185717_p29 | lysin A | phrog_317 | endolysin | lysis | 1 | 25527 | 27161 |
| ASM62514.1 | MF185717_p7 | capsid maturation protease | phrog_1752 | head maturation protease | head and packaging | 1 | 4289 | 7024 |
| ASM62572.1 | MF185717_p65 | DNA helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 44390 | 46105 |
| ASM62567.1 | MF185717_p60 | hypothetical protein | phrog_1911 | unknown function | unknown function | 1 | 40379 | 40972 |
| ASM62592.1 | MF185717_p85 | hypothetical protein | phrog_19954 | unknown function | unknown function | 1 | 54924 | 55091 |
| ASM62560.1 | MF185717_p53 | hypothetical protein | phrog_4832 | unknown function | unknown function | 1 | 38166 | 38330 |
| ASM62574.1 | MF185717_p67 | peptidase | phrog_908 | unknown function | unknown function | 1 | 46549 | 47403 |
| ASM62563.1 | MF185717_p56 | exonuclease | phrog_1674 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 38832 | 39692 |
| ASM62530.1 | MF185717_p23 | minor tail protein | phrog_1565 | minor tail protein | tail | 1 | 19807 | 20892 |
| ASM62543.1 | MF185717_p36 | HTH DNA binding protein | phrog_2311 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 30489 | 30953 |
| ASM62526.1 | MF185717_p19 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 16301 | 17431 |
| ASM62547.1 | MF185717_p40 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 33002 | 33853 |
| ASM62537.1 | MF185717_p30 | lysin B | phrog_102 | endolysin | lysis | 1 | 27158 | 27919 |
| ASM62573.1 | MF185717_p66 | resolvase | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 46184 | 46549 |
| ASM62545.1 | MF185717_p38 | integrase | phrog_95 | integrase | integration and excision | 1 | 31272 | 32717 |
| ASM62527.1 | MF185717_p20 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 17473 | 18690 |
| ASM62555.1 | MF185717_p48 | hypothetical protein | phrog_7933 | unknown function | unknown function | 1 | 36887 | 37105 |
| ASM62517.1 | MF185717_p10 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 7993 | 8925 |
| ASM62587.1 | MF185717_p80 | hypothetical protein | phrog_16134 | unknown function | unknown function | 1 | 53245 | 53529 |
| ASM62523.1 | MF185717_p17 | tail assembly chaperone | phrog_1861 | unknown function | unknown function | 1 | 11208 | 11699 |
| ASM62529.1 | MF185717_p22 | minor tail protein | phrog_1697 | minor tail protein | tail | 1 | 19301 | 19810 |
| ASM62542.1 | MF185717_p35 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 30143 | 30367 |
| ASM62540.1 | MF185717_p33 | hypothetical protein | phrog_1738 | unknown function | unknown function | 1 | 28691 | 28942 |
| ASM62532.1 | MF185717_p25 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 21193 | 23697 |
| ASM62591.1 | MF185717_p84 | hypothetical protein | phrog_19470 | unknown function | unknown function | 1 | 54737 | 54889 |
| ASM62519.1 | MF185717_p12 | head-to-tail connector protein | phrog_763 | head-tail adaptor | connector | 1 | 9439 | 9801 |
| ASM62546.1 | MF185717_p39 | hypothetical protein | phrog_24177 | unknown function | unknown function | 1 | 32836 | 32982 |
| ASM62562.1 | MF185717_p55 | hypothetical protein | phrog_1498 | unknown function | unknown function | 1 | 38668 | 38835 |
| ASM62511.1 | MF185717_p4 | terminase small subunit | phrog_1459 | terminase small subunit | head and packaging | 1 | 997 | 1356 |
| ASM62589.1 | MF185717_p82 | hypothetical protein | phrog_980 | unknown function | unknown function | 1 | 54184 | 54471 |
| ASM62585.1 | MF185717_p78 | hypothetical protein | phrog_3167 | unknown function | unknown function | 1 | 52246 | 52608 |
| ASM62564.1 | MF185717_p57 | hypothetical protein | phrog_10500 | unknown function | unknown function | 1 | 39689 | 39913 |
| ASM62524.1 | MF185717_p16 | tail assembly chaperone | phrog_1326 | tail assembly chaperone | tail | 1 | 11208 | 12094 |
| ASM62528.1 | MF185717_p21 | minor tail protein | phrog_20962 | minor tail protein | tail | 1 | 18767 | 19300 |
| ASM62579.1 | MF185717_p72 | hypothetical protein | phrog_5135 | unknown function | unknown function | 1 | 48977 | 49312 |
| ASM62584.1 | MF185717_p77 | RNA ligase | phrog_1075 | tRNA splicing ligase | DNA, RNA and nucleotide metabolism | 1 | 51036 | 52241 |
| ASM62512.1 | MF185717_p5 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 1349 | 2776 |
| ASM62602.1 | MF185717_p95 | hypothetical protein | phrog_38546 | unknown function | unknown function | 1 | 60160 | 60321 |
| ASM62534.1 | MF185717_p27 | minor tail protein | phrog_416 | minor tail protein | tail | 1 | 24010 | 25074 |
| ASM62569.1 | MF185717_p62 | HNH endonuclease | phrog_10696 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 41326 | 41817 |
| ASM62566.1 | MF185717_p59 | hypothetical protein | phrog_2388 | unknown function | unknown function | 1 | 40119 | 40298 |
| ASM62554.1 | MF185717_p47 | hypothetical protein | phrog_2781 | unknown function | unknown function | 1 | 36277 | 36879 |
| ASM62559.1 | MF185717_p52 | hypothetical protein | phrog_10462 | unknown function | unknown function | 1 | 37988 | 38143 |
| ASM62575.1 | MF185717_p68 | hypothetical protein | phrog_5505 | unknown function | unknown function | 1 | 47473 | 47682 |
| ASM62596.1 | MF185717_p89 | hypothetical protein | phrog_10190 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 56617 | 57015 |
| ASM62549.1 | MF185717_p42 | CRO protein | phrog_1702 | transcriptional repressor | transcription regulation | 1 | 34517 | 34864 |
| ASM62578.1 | MF185717_p71 | hypothetical protein | phrog_7217 | unknown function | unknown function | 1 | 48729 | 48980 |
| ASM62516.1 | MF185717_p9 | scaffolding protein | phrog_1793 | head scaffolding protein | head and packaging | 1 | 7355 | 7921 |
| ASM62590.1 | MF185717_p83 | hypothetical protein | phrog_3665 | unknown function | unknown function | 1 | 54468 | 54611 |
| ASM62561.1 | MF185717_p54 | hypothetical protein | phrog_2870 | unknown function | unknown function | 1 | 38399 | 38671 |
| ASM62553.1 | MF185717_p46 | hypothetical protein | phrog_2286 | unknown function | unknown function | 1 | 35510 | 36238 |