| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF324913 |
Definition |
Mycobacterium phage Cain, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Timquatrovirus; unclassified Timquatrovirus. |
DB of origin |
NUCCORE |
Length |
60813 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
100 |
%GC |
66.27 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ASR85437.1 | MF324913_p36 | hypothetical protein | phrog_33470 | unknown function | unknown function | 1 | 29158 | 29244 |
| ASR85466.1 | MF324913_p65 | hypothetical protein | phrog_1581 | unknown function | unknown function | 1 | 42411 | 42623 |
| ASR85434.1 | MF324913_p33 | hypothetical protein | phrog_1738 | unknown function | unknown function | 1 | 27435 | 27686 |
| ASR85406.1 | MF324913_p5 | terminase small subunit | phrog_1459 | terminase small subunit | head and packaging | 1 | 1277 | 1525 |
| ASR85467.1 | MF324913_p66 | hypothetical protein | phrog_2388 | unknown function | unknown function | 1 | 42623 | 42748 |
| ASR85500.1 | MF324913_p99 | hypothetical protein | phrog_4561 | unknown function | unknown function | 1 | 60192 | 60458 |
| ASR85404.1 | MF324913_p3 | hypothetical protein | phrog_2293 | unknown function | unknown function | 1 | 658 | 882 |
| ASR85452.1 | MF324913_p51 | helix-turn-helix DNA binding domain protein | phrog_2286 | unknown function | unknown function | 1 | 36450 | 37145 |
| ASR85424.1 | MF324913_p23 | minor tail protein | phrog_1565 | minor tail protein | tail | 1 | 18637 | 19740 |
| ASR85464.1 | MF324913_p63 | hypothetical protein | phrog_8427 | unknown function | unknown function | 1 | 41981 | 42172 |
| ASR85444.1 | MF324913_p43 | membrane protein | phrog_950 | unknown function | unknown function | -1 | 33527 | 34393 |
| ASR85447.1 | MF324913_p46 | excise | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 35337 | 35549 |
| ASR85432.1 | MF324913_p31 | holin | phrog_565 | holin | lysis | 1 | 26615 | 27079 |
| ASR85413.1 | MF324913_p12 | head-to-tail connector protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 7923 | 8303 |
| ASR85458.1 | MF324913_p57 | hypothetical protein | phrog_1956 | unknown function | unknown function | 1 | 39164 | 39454 |
| ASR85402.1 | MF324913_p1 | hypothetical protein | phrog_4624 | unknown function | unknown function | 1 | 114 | 323 |
| ASR85407.1 | MF324913_p6 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 1509 | 2936 |
| ASR85482.1 | MF324913_p81 | hypothetical protein | phrog_12426 | unknown function | unknown function | 1 | 51640 | 51870 |
| ASR85476.1 | MF324913_p75 | helix-turn-helix DNA binding domain protein | phrog_908 | unknown function | unknown function | 1 | 48589 | 49692 |
| ASR85442.1 | MF324913_p41 | integrase | phrog_1 | integrase | integration and excision | 1 | 31790 | 33169 |
| ASR85440.1 | MF324913_p39 | hypothetical protein | phrog_2433 | unknown function | unknown function | 1 | 30397 | 31083 |
| ASR85472.1 | MF324913_p71 | DNA primase/polymerase | phrog_2478 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 44277 | 46868 |
| ASR85415.1 | MF324913_p14 | head-to-tail connector protein | phrog_387 | neck protein | connector | 1 | 8637 | 8924 |
| ASR85420.1 | MF324913_p19 | tape measure protein | phrog_971 | endolysin | lysis | 1 | 11083 | 15084 |
| ASR85426.1 | MF324913_p25 | minor tail protein | phrog_746 | minor tail protein | tail | 1 | 20058 | 22394 |
| ASR85443.1 | MF324913_p42 | hypothetical protein | phrog_8155 | unknown function | unknown function | 1 | 33178 | 33459 |
| ASR85468.1 | MF324913_p67 | hypothetical protein | phrog_1911 | unknown function | unknown function | 1 | 42831 | 43349 |
| ASR85419.1 | MF324913_p17 | tail assembly chaperone | phrog_1326 | tail assembly chaperone | tail | 1 | 10242 | 11083 |
| ASR85488.1 | MF324913_p87 | hypothetical protein | phrog_5288 | unknown function | unknown function | 1 | 53926 | 54192 |
| ASR85494.1 | MF324913_p93 | hypothetical protein | phrog_2493 | unknown function | unknown function | 1 | 57320 | 57898 |
| ASR85486.1 | MF324913_p85 | hypothetical protein | phrog_5135 | unknown function | unknown function | 1 | 53307 | 53669 |
| ASR85473.1 | MF324913_p72 | hypothetical protein | phrog_7662 | unknown function | unknown function | 1 | 46865 | 47218 |
| ASR85456.1 | MF324913_p55 | hypothetical protein | phrog_301 | secreted protein | other | 1 | 38526 | 38873 |
| ASR85489.1 | MF324913_p88 | hypothetical protein | phrog_666 | unknown function | unknown function | 1 | 54343 | 54552 |
| ASR85471.1 | MF324913_p70 | hypothetical protein | phrog_24356 | unknown function | unknown function | 1 | 44074 | 44238 |
| ASR85477.1 | MF324913_p76 | hypothetical protein | phrog_4269 | unknown function | unknown function | 1 | 49702 | 49935 |
| ASR85403.1 | MF324913_p2 | hypothetical protein | phrog_2074 | unknown function | unknown function | 1 | 388 | 648 |
| ASR85481.1 | MF324913_p80 | protease | phrog_1006 | unknown function | unknown function | 1 | 50952 | 51524 |
| ASR85445.1 | MF324913_p44 | immunity repressor | phrog_1746 | transcriptional repressor | transcription regulation | -1 | 34451 | 34864 |
| ASR85412.1 | MF324913_p11 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 6881 | 7804 |
| ASR85463.1 | MF324913_p62 | hypothetical protein | phrog_3492 | unknown function | unknown function | 1 | 41638 | 41979 |
| ASR85483.1 | MF324913_p82 | helix-turn-helix DNA binding domain protein | phrog_2342 | unknown function | unknown function | 1 | 51960 | 52805 |
| ASR85410.1 | MF324913_p9 | hypothetical protein | phrog_1757 | unknown function | unknown function | 1 | 5942 | 6127 |
| ASR85462.1 | MF324913_p61 | exonuclease | phrog_1674 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 40742 | 41641 |
| ASR85446.1 | MF324913_p45 | CRO protein | phrog_1702 | transcriptional repressor | transcription regulation | 1 | 35104 | 35340 |
| ASR85491.1 | MF324913_p90 | RNA ligase | phrog_1075 | tRNA splicing ligase | DNA, RNA and nucleotide metabolism | 1 | 55028 | 56233 |
| ASR85459.1 | MF324913_p58 | DNA polymerase III subunit | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 39467 | 40030 |
| ASR85454.1 | MF324913_p53 | hypothetical protein | phrog_2781 | unknown function | unknown function | 1 | 37396 | 38322 |
| ASR85409.1 | MF324913_p8 | capsid maturation protease | phrog_1752 | head maturation protease | head and packaging | 1 | 4458 | 5945 |
| ASR85416.1 | MF324913_p15 | head-to-tail connector protein | phrog_123 | tail terminator | connector | 1 | 8921 | 9358 |
| ASR85479.1 | MF324913_p78 | hypothetical protein | phrog_7658 | unknown function | unknown function | 1 | 50327 | 50593 |
| ASR85430.1 | MF324913_p29 | lysin A | phrog_317 | endolysin | lysis | 1 | 24209 | 25855 |
| ASR85469.1 | MF324913_p68 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 43464 | 43703 |
| ASR85405.1 | MF324913_p4 | hypothetical protein | phrog_2622 | unknown function | unknown function | 1 | 1083 | 1277 |
| ASR85465.1 | MF324913_p64 | hypothetical protein | phrog_5466 | unknown function | unknown function | 1 | 42184 | 42414 |
| ASR85429.1 | MF324913_p28 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 23837 | 24193 |
| ASR85436.1 | MF324913_p35 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 28878 | 29111 |
| ASR85439.1 | MF324913_p38 | hypothetical protein | phrog_4112 | unknown function | unknown function | 1 | 29874 | 30254 |
| ASR85490.1 | MF324913_p89 | hypothetical protein | phrog_30629 | unknown function | unknown function | 1 | 54574 | 54921 |
| ASR85408.1 | MF324913_p7 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2948 | 4498 |
| ASR85485.1 | MF324913_p84 | hypothetical protein | phrog_5035 | unknown function | unknown function | 1 | 53056 | 53310 |
| ASR85474.1 | MF324913_p73 | resolvase | phrog_3055 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 47275 | 47988 |
| ASR85425.1 | MF324913_p24 | minor tail protein | phrog_1736 | minor tail protein | tail | 1 | 19746 | 20057 |
| ASR85461.1 | MF324913_p60 | hypothetical protein | phrog_2831 | unknown function | unknown function | 1 | 40350 | 40745 |
| ASR85411.1 | MF324913_p10 | scaffolding protein | phrog_1793 | head scaffolding protein | head and packaging | 1 | 6234 | 6812 |
| ASR85438.1 | MF324913_p37 | helix-turn-helix DNA binding domain protein | phrog_2311 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 29440 | 29877 |
| ASR85423.1 | MF324913_p22 | minor tail protein | phrog_1697 | minor tail protein | tail | 1 | 18104 | 18577 |
| ASR85428.1 | MF324913_p27 | minor tail protein | phrog_416 | minor tail protein | tail | 1 | 22682 | 23743 |
| ASR85414.1 | MF324913_p13 | head-to-tail connector protein | phrog_763 | head-tail adaptor | connector | 1 | 8303 | 8656 |
| ASR85441.1 | MF324913_p40 | hypothetical protein | phrog_9364 | unknown function | unknown function | 1 | 31166 | 31342 |
| ASR85450.1 | MF324913_p49 | hypothetical protein | phrog_2654 | unknown function | unknown function | 1 | 36158 | 36325 |
| ASR85431.1 | MF324913_p30 | lysin B | phrog_102 | endolysin | lysis | 1 | 25852 | 26595 |
| ASR85497.1 | MF324913_p96 | hypothetical protein | phrog_4631 | unknown function | unknown function | 1 | 58640 | 58945 |
| ASR85417.1 | MF324913_p16 | major tail protein | phrog_117 | major tail protein | tail | 1 | 9511 | 10125 |
| ASR85421.1 | MF324913_p20 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 15199 | 16338 |
| ASR85484.1 | MF324913_p83 | hypothetical protein | phrog_7731 | unknown function | unknown function | 1 | 52802 | 53059 |
| ASR85501.1 | MF324913_p100 | HNH endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 60455 | 60763 |
| ASR85498.1 | MF324913_p97 | hypothetical protein | phrog_28021 | unknown function | unknown function | 1 | 59150 | 59440 |
| ASR85487.1 | MF324913_p86 | helix-turn-helix DNA binding domain protein | phrog_5794 | unknown function | unknown function | 1 | 53666 | 53929 |
| ASR85499.1 | MF324913_p98 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 59843 | 60178 |
| ASR85495.1 | MF324913_p94 | hypothetical protein | phrog_3665 | unknown function | unknown function | 1 | 57895 | 58065 |
| ASR85460.1 | MF324913_p59 | hypothetical protein | phrog_2870 | unknown function | unknown function | 1 | 40027 | 40353 |
| ASR85427.1 | MF324913_p26 | minor tail protein | phrog_3901 | unknown function | unknown function | 1 | 22395 | 22682 |
| ASR85448.1 | MF324913_p47 | hypothetical protein | phrog_2908 | unknown function | unknown function | 1 | 35553 | 35846 |
| ASR85451.1 | MF324913_p50 | hypothetical protein | phrog_17160 | unknown function | unknown function | 1 | 36322 | 36453 |
| ASR85496.1 | MF324913_p95 | hypothetical protein | phrog_20318 | unknown function | unknown function | 1 | 58347 | 58529 |
| ASR85453.1 | MF324913_p52 | WhiB family transcription factor | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 37142 | 37399 |
| ASR85422.1 | MF324913_p21 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 16338 | 18104 |
| ASR85475.1 | MF324913_p74 | hypothetical protein | phrog_3478 | unknown function | unknown function | 1 | 47981 | 48592 |
| ASR85433.1 | MF324913_p32 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 27076 | 27438 |
| ASR85455.1 | MF324913_p54 | hypothetical protein | phrog_542 | unknown function | unknown function | 1 | 38319 | 38492 |
| ASR85478.1 | MF324913_p77 | hypothetical protein | phrog_1338 | unknown function | unknown function | 1 | 49932 | 50204 |
| ASR85435.1 | MF324913_p34 | hypothetical protein | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 27673 | 28881 |
| ASR85470.1 | MF324913_p69 | HNH endonuclease | phrog_1571 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 43703 | 44077 |
| ASR85492.1 | MF324913_p91 | hypothetical protein | phrog_3167 | unknown function | unknown function | 1 | 56237 | 56599 |
| ASR85480.1 | MF324913_p79 | hypothetical protein | phrog_5546 | unknown function | unknown function | 1 | 50656 | 50868 |
| ASR85418.1 | MF324913_p18 | tail assembly chaperone | phrog_1861 | unknown function | unknown function | 1 | 10242 | 10664 |
| ASR85493.1 | MF324913_p92 | hypothetical protein | phrog_2822 | unknown function | unknown function | 1 | 56599 | 57330 |
| ASR85449.1 | MF324913_p48 | hypothetical protein | phrog_6733 | unknown function | unknown function | 1 | 35919 | 36161 |
| ASR85457.1 | MF324913_p56 | hypothetical protein | phrog_3186 | unknown function | unknown function | 1 | 38866 | 39171 |