Genomic map of Shigella phage Sf14 (MF327003)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MF327003
Definition
Shigella phage Sf14, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Ounavirinae; Mooglevirus; Shigella virus Sf14.
DB of origin
NUCCORE
Length
87575
Host Name
Shigella flexneri
Host domain
Bacteria
Is prophage?
undef
Number of proteins
131
%GC
39.06
Number of singletons
1
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AUV62818.1 MF327003_p77 DNA primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 54540 56531
AUV62861.1 MF327003_p120 hypothetical protein phrog_14219 unknown function unknown function 1 83149 83310
AUV62828.1 MF327003_p87 hypothetical protein phrog_3358 unknown function unknown function 1 61214 61549
AUV62759.1 MF327003_p18 hypothetical protein phrog_4266 unknown function unknown function -1 8463 8873
AUV62867.1 MF327003_p126 hypothetical protein phrog_3303 unknown function unknown function 1 85281 85838
AUV62790.1 MF327003_p49 baseplate assembly protein phrog_6 baseplate wedge subunit tail 1 35877 37346
AUV62846.1 MF327003_p105 rIIA protein phrog_612 RIIA lysis inhibitor lysis 1 74264 76636
AUV62813.1 MF327003_p72 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 49368 52067
AUV62754.1 MF327003_p13 hypothetical protein phrog_5380 unknown function unknown function -1 6064 6804
AUV62804.1 MF327003_p63 hypothetical protein phrog_4473 unknown function unknown function -1 46168 46371
AUV62786.1 MF327003_p45 hypothetical protein phrog_349 virion structural protein head and packaging 1 33505 33846
AUV62793.1 MF327003_p52 tail fiber protein phrog_2097 tail fiber protein tail 1 38508 39683
AUV62778.1 MF327003_p37 hypothetical protein phrog_2874 unknown function unknown function 1 26959 27360
AUV62840.1 MF327003_p99 hypothetical protein phrog_3500 unknown function unknown function 1 70098 70613
AUV62777.1 MF327003_p36 hypothetical protein phrog_222 tail completion or Neck1 protein connector 1 26480 26962
AUV62836.1 MF327003_p95 anaerobic NTP reductase-activating protein phrog_626 anaerobic ribonucleotide reductase small subunit DNA, RNA and nucleotide metabolism 1 68681 69166
AUV62870.1 MF327003_p129 hypothetical protein phrog_13570 unknown function unknown function 1 86535 86732
AUV62752.1 MF327003_p11 hypothetical protein phrog_4343 unknown function unknown function -1 5346 5852
AUV62848.1 MF327003_p107 lysin phrog_600 unknown function unknown function 1 77939 78487
AUV62872.1 MF327003_p131 hypothetical protein phrog_4318 unknown function unknown function 1 87234 87575
AUV62866.1 MF327003_p125 hypothetical protein phrog_9030 unknown function unknown function 1 84948 85196
AUV62784.1 MF327003_p43 tail tape measure protein phrog_4036 tail length tape measure protein tail 1 30462 32699
AUV62803.1 MF327003_p62 transcriptional regulator phrog_1373 transcriptional regulator transcription regulation -1 45876 46175
AUV62801.1 MF327003_p60 hypothetical protein phrog_9143 unknown function unknown function -1 45027 45530
AUV62791.1 MF327003_p50 hypothetical protein phrog_4017 baseplate protein tail 1 37349 38206
AUV62835.1 MF327003_p94 hypothetical protein phrog_4382 unknown function unknown function 1 68313 68681
AUV62745.1 MF327003_p4 hypothetical protein phrog_4559 unknown function unknown function 1 1320 1571
AUV62781.1 MF327003_p40 hypothetical protein phrog_280 virion structural protein head and packaging 1 29302 29748
AUV62824.1 MF327003_p83 GIY-YIG homing endonuclease phrog_447 NAD synthetase other 1 59439 59942
AUV62843.1 MF327003_p102 nicotinamide phosphoribosyltransferase phrog_448 nicotinamide phosphoribosyl transferase other 1 71825 73651
AUV62770.1 MF327003_p29 portal protein phrog_113 portal protein head and packaging 1 20824 22290
AUV62851.1 MF327003_p110 i-spanin phrog_1152 Rz-like spanin lysis 1 79634 79981
AUV62862.1 MF327003_p121 hypothetical protein phrog_4401 unknown function unknown function 1 83395 83691
AUV62787.1 MF327003_p46 hypothetical protein phrog_196 baseplate hub tail 1 33846 34823
AUV62776.1 MF327003_p35 hypothetical protein phrog_1732 unknown function unknown function 1 26031 26480
AUV62855.1 MF327003_p114 hypothetical protein phrog_4453 unknown function unknown function 1 80876 81202
AUV62762.1 MF327003_p21 hypothetical protein phrog_4463 unknown function unknown function -1 10500 10868
AUV62829.1 MF327003_p88 ribonucleoside triphosphate reductase large subunit phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism 1 61601 63835
AUV62856.1 MF327003_p115 hypothetical protein phrog_6082 unknown function unknown function 1 81177 81437
AUV62816.1 MF327003_p75 deoxynucleotide monophosphate kinase phrog_139 deoxynucleoside monophosphate kinase other 1 53603 54343
AUV62823.1 MF327003_p82 HNH homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 58951 59442
AUV62789.1 MF327003_p48 hypothetical protein phrog_120 baseplate wedge subunit tail 1 35461 35877
AUV62744.1 MF327003_p3 hypothetical protein phrog_7022 unknown function unknown function 1 991 1254
AUV62767.1 MF327003_p26 membrane protein phrog_2114 unknown function unknown function 1 17852 18586
AUV62834.1 MF327003_p93 anaerobic NTP reductase phrog_487 NrdD-like anaerobic ribonucleotide reductase large subunit moron, auxiliary metabolic gene and host takeover 1 65721 67865
AUV62825.1 MF327003_p84 hypothetical protein phrog_4442 unknown function unknown function 1 59944 60159
AUV62831.1 MF327003_p90 ribonucleoside triphosphate reductase small subunit phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism 1 64163 65236
AUV62761.1 MF327003_p20 tail protein phrog_3995 tail protein tail -1 9385 10503
AUV62811.1 MF327003_p70 hypothetical protein phrog_5180 unknown function unknown function -1 48900 49109
AUV62799.1 MF327003_p58 hypothetical protein phrog_2993 unknown function unknown function -1 44241 44480
AUV62785.1 MF327003_p44 hypothetical protein phrog_3721 unknown function unknown function 1 32699 33505
AUV62750.1 MF327003_p9 hypothetical protein phrog_4457 unknown function unknown function -1 5066 5275
AUV62749.1 MF327003_p8 hypothetical protein phrog_7193 unknown function unknown function -1 4568 5023
AUV62860.1 MF327003_p119 hypothetical protein phrog_5293 unknown function unknown function 1 82931 83137
AUV62857.1 MF327003_p116 hypothetical protein phrog_2210 unknown function unknown function 1 81430 81630
AUV62769.1 MF327003_p28 terminase large subunit phrog_979 terminase large subunit head and packaging 1 19210 20811
AUV62850.1 MF327003_p109 hypothetical protein phrog_2267 unknown function unknown function 1 79172 79633
AUV62795.1 MF327003_p54 hypothetical protein phrog_402 unknown function unknown function 1 42194 42388
AUV62854.1 MF327003_p113 hypothetical protein singleton unknown function unknown function 1 80573 80866
AUV62868.1 MF327003_p127 hypothetical protein phrog_4640 unknown function unknown function 1 85902 86132
AUV62775.1 MF327003_p34 major capsid protein phrog_29 major head protein head and packaging 1 24905 26008
AUV62871.1 MF327003_p130 hypothetical protein phrog_4318 unknown function unknown function 1 86818 87159
AUV62849.1 MF327003_p108 polynucleotide kinase phrog_3970 polynucleotide kinase other 1 78465 79160
AUV62821.1 MF327003_p80 hypothetical protein phrog_3877 unknown function unknown function 1 57004 57864
AUV62858.1 MF327003_p117 phosphatase phrog_335 phosphatase other 1 81632 82426
AUV62780.1 MF327003_p39 structural protein phrog_205 tail sheath tail 1 27935 29287
AUV62805.1 MF327003_p64 hypothetical protein phrog_4332 unknown function unknown function -1 46374 46754
AUV62845.1 MF327003_p104 hypothetical protein phrog_3931 unknown function unknown function 1 74022 74201
AUV62812.1 MF327003_p71 hypothetical protein phrog_4230 unknown function unknown function -1 49106 49306
AUV62814.1 MF327003_p73 hypothetical protein phrog_4039 unknown function unknown function 1 52327 52767
AUV62852.1 MF327003_p111 o-spanin phrog_4180 unknown function unknown function 1 79947 80141
AUV62771.1 MF327003_p30 hypothetical protein phrog_3977 unknown function unknown function 1 22290 22790
AUV62826.1 MF327003_p85 phosphoribosyl-ATP pyrophosphohydrolase-like protein phrog_2144 MazG-like pyrophosphatase other 1 60159 60914
AUV62782.1 MF327003_p41 tape measure chaperone phrog_1613 tail assembly chaperone tail 1 29825 30226
AUV62837.1 MF327003_p96 hypothetical protein phrog_5082 unknown function unknown function 1 69192 69449
AUV62764.1 MF327003_p23 hypothetical protein phrog_5064 unknown function unknown function -1 11496 11729
AUV62768.1 MF327003_p27 hypothetical protein phrog_4397 unknown function unknown function 1 18982 19188
AUV62765.1 MF327003_p24 hypothetical protein phrog_4114 unknown function unknown function 1 12120 12491
AUV62743.1 MF327003_p2 hypothetical protein phrog_4725 unknown function unknown function 1 403 930
AUV62763.1 MF327003_p22 hypothetical protein phrog_4034 unknown function unknown function -1 10912 11502
AUV62755.1 MF327003_p14 hypothetical protein phrog_4109 unknown function unknown function -1 6875 7468
AUV62794.1 MF327003_p53 tail fiber protein phrog_4277 tail fiber protein tail 1 39729 42107
AUV62748.1 MF327003_p7 hypothetical protein phrog_9967 unknown function unknown function -1 4260 4571
AUV62766.1 MF327003_p25 hypothetical protein phrog_850 RNA-binding protein DNA, RNA and nucleotide metabolism 1 12570 13985
AUV62841.1 MF327003_p100 hypothetical protein phrog_4726 unknown function unknown function 1 70606 70884
AUV62788.1 MF327003_p47 baseplate assembly protein phrog_11 baseplate spike tail 1 34820 35461
AUV62773.1 MF327003_p32 head maturation protease phrog_53 head maturation protease head and packaging 1 23134 24483
AUV62827.1 MF327003_p86 hypothetical protein phrog_4007 unknown function unknown function 1 60895 61221
AUV62747.1 MF327003_p6 hypothetical protein phrog_4713 unknown function unknown function -1 3839 4273
AUV62779.1 MF327003_p38 hypothetical protein phrog_4082 unknown function unknown function 1 27335 27934
AUV62830.1 MF327003_p89 hypothetical protein phrog_2652 unknown function unknown function 1 63969 64166
AUV62838.1 MF327003_p97 hypothetical protein phrog_4425 unknown function unknown function 1 69465 69722
AUV62809.1 MF327003_p68 hypothetical protein phrog_902 unknown function unknown function -1 48396 48641
AUV62742.1 MF327003_p1 hypothetical protein phrog_7482 unknown function unknown function 1 198 338
AUV62751.1 MF327003_p10 hypothetical protein phrog_6279 unknown function unknown function -1 5272 5364
AUV62796.1 MF327003_p55 holin phrog_4038 unknown function unknown function 1 42388 42762
AUV62853.1 MF327003_p112 hypothetical protein phrog_4391 unknown function unknown function 1 80141 80410
AUV62757.1 MF327003_p16 hypothetical protein phrog_4385 unknown function unknown function -1 7807 8100
AUV62817.1 MF327003_p76 hypothetical protein phrog_4469 unknown function unknown function 1 54347 54547
AUV62844.1 MF327003_p103 hypothetical protein phrog_4262 unknown function unknown function 1 73705 74040
AUV62863.1 MF327003_p122 hypothetical protein phrog_4375 unknown function unknown function 1 83685 84032
AUV62839.1 MF327003_p98 hypothetical protein phrog_4462 unknown function unknown function 1 69734 70045
AUV62772.1 MF327003_p31 hypothetical protein phrog_240 head protein head and packaging 1 22790 23122
AUV62865.1 MF327003_p124 hypothetical protein phrog_4327 unknown function unknown function 1 84455 84862
AUV62822.1 MF327003_p81 exodeoxyribonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 57927 58973
AUV62792.1 MF327003_p51 hypothetical protein phrog_4141 unknown function unknown function 1 38206 38505
AUV62869.1 MF327003_p128 hypothetical protein phrog_10118 unknown function unknown function 1 86222 86443
AUV62819.1 MF327003_p78 hypothetical protein phrog_4982 unknown function unknown function 1 56506 56784
AUV62802.1 MF327003_p61 hypothetical protein phrog_4116 unknown function unknown function -1 45515 45874
AUV62774.1 MF327003_p33 structural protein phrog_4146 tail protease other 1 24496 24873
AUV62756.1 MF327003_p15 hypothetical protein phrog_4040 unknown function unknown function -1 7470 7814
AUV62760.1 MF327003_p19 lysin phrog_7 endolysin lysis -1 8912 9376
AUV62783.1 MF327003_p42 tape measure chaperone phrog_4963 tail assembly chaperone tail 1 30235 30462
AUV62808.1 MF327003_p67 hypothetical protein phrog_4427 unknown function unknown function -1 48188 48409
AUV62797.1 MF327003_p56 thymidylate synthase phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism -1 42798 43697
AUV62810.1 MF327003_p69 hypothetical protein phrog_9065 unknown function unknown function -1 48652 48903
AUV62753.1 MF327003_p12 hypothetical protein phrog_4459 unknown function unknown function -1 5849 6067
AUV62832.1 MF327003_p91 glutaredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 65236 65478
AUV62798.1 MF327003_p57 dihydrofolate reductase phrog_316 dihydrofolate reductase DNA, RNA and nucleotide metabolism -1 43699 44244
AUV62800.1 MF327003_p59 hypothetical protein phrog_4422 unknown function unknown function -1 44510 45025
AUV62820.1 MF327003_p79 hypothetical protein phrog_4424 unknown function unknown function 1 56781 56918
AUV62807.1 MF327003_p66 hypothetical protein phrog_20095 unknown function unknown function -1 48093 48191
AUV62815.1 MF327003_p74 hypothetical protein phrog_4251 minor tail protein tail 1 52751 53545
AUV62746.1 MF327003_p5 hypothetical protein phrog_4330 unknown function unknown function -1 3171 3836
AUV62833.1 MF327003_p92 membrane protein phrog_4532 unknown function unknown function 1 65471 65671
AUV62842.1 MF327003_p101 ribose-phosphate pyrophosphokinase phrog_619 ribose-phosphate pyrophosphokinase other 1 70895 71776
AUV62864.1 MF327003_p123 hypothetical protein phrog_3436 unknown function unknown function 1 84092 84364
AUV62847.1 MF327003_p106 rIIB protein phrog_609 RIIB lysis inhibitor lysis 1 76716 77837
AUV62758.1 MF327003_p17 hypothetical protein phrog_4348 unknown function unknown function -1 8102 8470
AUV62806.1 MF327003_p65 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism -1 46996 48096
AUV62859.1 MF327003_p118 hypothetical protein phrog_15689 unknown function unknown function -1 82472 82708