| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF327003 |
Definition |
Shigella phage Sf14, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Ounavirinae; Mooglevirus; Shigella virus Sf14. |
DB of origin |
NUCCORE |
Length |
87575 |
Host Name |
Shigella flexneri |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
131 |
%GC |
39.06 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AUV62818.1 | MF327003_p77 | DNA primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 54540 | 56531 |
| AUV62861.1 | MF327003_p120 | hypothetical protein | phrog_14219 | unknown function | unknown function | 1 | 83149 | 83310 |
| AUV62828.1 | MF327003_p87 | hypothetical protein | phrog_3358 | unknown function | unknown function | 1 | 61214 | 61549 |
| AUV62759.1 | MF327003_p18 | hypothetical protein | phrog_4266 | unknown function | unknown function | -1 | 8463 | 8873 |
| AUV62867.1 | MF327003_p126 | hypothetical protein | phrog_3303 | unknown function | unknown function | 1 | 85281 | 85838 |
| AUV62790.1 | MF327003_p49 | baseplate assembly protein | phrog_6 | baseplate wedge subunit | tail | 1 | 35877 | 37346 |
| AUV62846.1 | MF327003_p105 | rIIA protein | phrog_612 | RIIA lysis inhibitor | lysis | 1 | 74264 | 76636 |
| AUV62813.1 | MF327003_p72 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 49368 | 52067 |
| AUV62754.1 | MF327003_p13 | hypothetical protein | phrog_5380 | unknown function | unknown function | -1 | 6064 | 6804 |
| AUV62804.1 | MF327003_p63 | hypothetical protein | phrog_4473 | unknown function | unknown function | -1 | 46168 | 46371 |
| AUV62786.1 | MF327003_p45 | hypothetical protein | phrog_349 | virion structural protein | head and packaging | 1 | 33505 | 33846 |
| AUV62793.1 | MF327003_p52 | tail fiber protein | phrog_2097 | tail fiber protein | tail | 1 | 38508 | 39683 |
| AUV62778.1 | MF327003_p37 | hypothetical protein | phrog_2874 | unknown function | unknown function | 1 | 26959 | 27360 |
| AUV62840.1 | MF327003_p99 | hypothetical protein | phrog_3500 | unknown function | unknown function | 1 | 70098 | 70613 |
| AUV62777.1 | MF327003_p36 | hypothetical protein | phrog_222 | tail completion or Neck1 protein | connector | 1 | 26480 | 26962 |
| AUV62836.1 | MF327003_p95 | anaerobic NTP reductase-activating protein | phrog_626 | anaerobic ribonucleotide reductase small subunit | DNA, RNA and nucleotide metabolism | 1 | 68681 | 69166 |
| AUV62870.1 | MF327003_p129 | hypothetical protein | phrog_13570 | unknown function | unknown function | 1 | 86535 | 86732 |
| AUV62752.1 | MF327003_p11 | hypothetical protein | phrog_4343 | unknown function | unknown function | -1 | 5346 | 5852 |
| AUV62848.1 | MF327003_p107 | lysin | phrog_600 | unknown function | unknown function | 1 | 77939 | 78487 |
| AUV62872.1 | MF327003_p131 | hypothetical protein | phrog_4318 | unknown function | unknown function | 1 | 87234 | 87575 |
| AUV62866.1 | MF327003_p125 | hypothetical protein | phrog_9030 | unknown function | unknown function | 1 | 84948 | 85196 |
| AUV62784.1 | MF327003_p43 | tail tape measure protein | phrog_4036 | tail length tape measure protein | tail | 1 | 30462 | 32699 |
| AUV62803.1 | MF327003_p62 | transcriptional regulator | phrog_1373 | transcriptional regulator | transcription regulation | -1 | 45876 | 46175 |
| AUV62801.1 | MF327003_p60 | hypothetical protein | phrog_9143 | unknown function | unknown function | -1 | 45027 | 45530 |
| AUV62791.1 | MF327003_p50 | hypothetical protein | phrog_4017 | baseplate protein | tail | 1 | 37349 | 38206 |
| AUV62835.1 | MF327003_p94 | hypothetical protein | phrog_4382 | unknown function | unknown function | 1 | 68313 | 68681 |
| AUV62745.1 | MF327003_p4 | hypothetical protein | phrog_4559 | unknown function | unknown function | 1 | 1320 | 1571 |
| AUV62781.1 | MF327003_p40 | hypothetical protein | phrog_280 | virion structural protein | head and packaging | 1 | 29302 | 29748 |
| AUV62824.1 | MF327003_p83 | GIY-YIG homing endonuclease | phrog_447 | NAD synthetase | other | 1 | 59439 | 59942 |
| AUV62843.1 | MF327003_p102 | nicotinamide phosphoribosyltransferase | phrog_448 | nicotinamide phosphoribosyl transferase | other | 1 | 71825 | 73651 |
| AUV62770.1 | MF327003_p29 | portal protein | phrog_113 | portal protein | head and packaging | 1 | 20824 | 22290 |
| AUV62851.1 | MF327003_p110 | i-spanin | phrog_1152 | Rz-like spanin | lysis | 1 | 79634 | 79981 |
| AUV62862.1 | MF327003_p121 | hypothetical protein | phrog_4401 | unknown function | unknown function | 1 | 83395 | 83691 |
| AUV62787.1 | MF327003_p46 | hypothetical protein | phrog_196 | baseplate hub | tail | 1 | 33846 | 34823 |
| AUV62776.1 | MF327003_p35 | hypothetical protein | phrog_1732 | unknown function | unknown function | 1 | 26031 | 26480 |
| AUV62855.1 | MF327003_p114 | hypothetical protein | phrog_4453 | unknown function | unknown function | 1 | 80876 | 81202 |
| AUV62762.1 | MF327003_p21 | hypothetical protein | phrog_4463 | unknown function | unknown function | -1 | 10500 | 10868 |
| AUV62829.1 | MF327003_p88 | ribonucleoside triphosphate reductase large subunit | phrog_84 | ribonucleoside-diphosphate reductase large subunit | DNA, RNA and nucleotide metabolism | 1 | 61601 | 63835 |
| AUV62856.1 | MF327003_p115 | hypothetical protein | phrog_6082 | unknown function | unknown function | 1 | 81177 | 81437 |
| AUV62816.1 | MF327003_p75 | deoxynucleotide monophosphate kinase | phrog_139 | deoxynucleoside monophosphate kinase | other | 1 | 53603 | 54343 |
| AUV62823.1 | MF327003_p82 | HNH homing endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 58951 | 59442 |
| AUV62789.1 | MF327003_p48 | hypothetical protein | phrog_120 | baseplate wedge subunit | tail | 1 | 35461 | 35877 |
| AUV62744.1 | MF327003_p3 | hypothetical protein | phrog_7022 | unknown function | unknown function | 1 | 991 | 1254 |
| AUV62767.1 | MF327003_p26 | membrane protein | phrog_2114 | unknown function | unknown function | 1 | 17852 | 18586 |
| AUV62834.1 | MF327003_p93 | anaerobic NTP reductase | phrog_487 | NrdD-like anaerobic ribonucleotide reductase large subunit | moron, auxiliary metabolic gene and host takeover | 1 | 65721 | 67865 |
| AUV62825.1 | MF327003_p84 | hypothetical protein | phrog_4442 | unknown function | unknown function | 1 | 59944 | 60159 |
| AUV62831.1 | MF327003_p90 | ribonucleoside triphosphate reductase small subunit | phrog_86 | ribonucleoside diphosphate reductase small subunit | DNA, RNA and nucleotide metabolism | 1 | 64163 | 65236 |
| AUV62761.1 | MF327003_p20 | tail protein | phrog_3995 | tail protein | tail | -1 | 9385 | 10503 |
| AUV62811.1 | MF327003_p70 | hypothetical protein | phrog_5180 | unknown function | unknown function | -1 | 48900 | 49109 |
| AUV62799.1 | MF327003_p58 | hypothetical protein | phrog_2993 | unknown function | unknown function | -1 | 44241 | 44480 |
| AUV62785.1 | MF327003_p44 | hypothetical protein | phrog_3721 | unknown function | unknown function | 1 | 32699 | 33505 |
| AUV62750.1 | MF327003_p9 | hypothetical protein | phrog_4457 | unknown function | unknown function | -1 | 5066 | 5275 |
| AUV62749.1 | MF327003_p8 | hypothetical protein | phrog_7193 | unknown function | unknown function | -1 | 4568 | 5023 |
| AUV62860.1 | MF327003_p119 | hypothetical protein | phrog_5293 | unknown function | unknown function | 1 | 82931 | 83137 |
| AUV62857.1 | MF327003_p116 | hypothetical protein | phrog_2210 | unknown function | unknown function | 1 | 81430 | 81630 |
| AUV62769.1 | MF327003_p28 | terminase large subunit | phrog_979 | terminase large subunit | head and packaging | 1 | 19210 | 20811 |
| AUV62850.1 | MF327003_p109 | hypothetical protein | phrog_2267 | unknown function | unknown function | 1 | 79172 | 79633 |
| AUV62795.1 | MF327003_p54 | hypothetical protein | phrog_402 | unknown function | unknown function | 1 | 42194 | 42388 |
| AUV62854.1 | MF327003_p113 | hypothetical protein | singleton | unknown function | unknown function | 1 | 80573 | 80866 |
| AUV62868.1 | MF327003_p127 | hypothetical protein | phrog_4640 | unknown function | unknown function | 1 | 85902 | 86132 |
| AUV62775.1 | MF327003_p34 | major capsid protein | phrog_29 | major head protein | head and packaging | 1 | 24905 | 26008 |
| AUV62871.1 | MF327003_p130 | hypothetical protein | phrog_4318 | unknown function | unknown function | 1 | 86818 | 87159 |
| AUV62849.1 | MF327003_p108 | polynucleotide kinase | phrog_3970 | polynucleotide kinase | other | 1 | 78465 | 79160 |
| AUV62821.1 | MF327003_p80 | hypothetical protein | phrog_3877 | unknown function | unknown function | 1 | 57004 | 57864 |
| AUV62858.1 | MF327003_p117 | phosphatase | phrog_335 | phosphatase | other | 1 | 81632 | 82426 |
| AUV62780.1 | MF327003_p39 | structural protein | phrog_205 | tail sheath | tail | 1 | 27935 | 29287 |
| AUV62805.1 | MF327003_p64 | hypothetical protein | phrog_4332 | unknown function | unknown function | -1 | 46374 | 46754 |
| AUV62845.1 | MF327003_p104 | hypothetical protein | phrog_3931 | unknown function | unknown function | 1 | 74022 | 74201 |
| AUV62812.1 | MF327003_p71 | hypothetical protein | phrog_4230 | unknown function | unknown function | -1 | 49106 | 49306 |
| AUV62814.1 | MF327003_p73 | hypothetical protein | phrog_4039 | unknown function | unknown function | 1 | 52327 | 52767 |
| AUV62852.1 | MF327003_p111 | o-spanin | phrog_4180 | unknown function | unknown function | 1 | 79947 | 80141 |
| AUV62771.1 | MF327003_p30 | hypothetical protein | phrog_3977 | unknown function | unknown function | 1 | 22290 | 22790 |
| AUV62826.1 | MF327003_p85 | phosphoribosyl-ATP pyrophosphohydrolase-like protein | phrog_2144 | MazG-like pyrophosphatase | other | 1 | 60159 | 60914 |
| AUV62782.1 | MF327003_p41 | tape measure chaperone | phrog_1613 | tail assembly chaperone | tail | 1 | 29825 | 30226 |
| AUV62837.1 | MF327003_p96 | hypothetical protein | phrog_5082 | unknown function | unknown function | 1 | 69192 | 69449 |
| AUV62764.1 | MF327003_p23 | hypothetical protein | phrog_5064 | unknown function | unknown function | -1 | 11496 | 11729 |
| AUV62768.1 | MF327003_p27 | hypothetical protein | phrog_4397 | unknown function | unknown function | 1 | 18982 | 19188 |
| AUV62765.1 | MF327003_p24 | hypothetical protein | phrog_4114 | unknown function | unknown function | 1 | 12120 | 12491 |
| AUV62743.1 | MF327003_p2 | hypothetical protein | phrog_4725 | unknown function | unknown function | 1 | 403 | 930 |
| AUV62763.1 | MF327003_p22 | hypothetical protein | phrog_4034 | unknown function | unknown function | -1 | 10912 | 11502 |
| AUV62755.1 | MF327003_p14 | hypothetical protein | phrog_4109 | unknown function | unknown function | -1 | 6875 | 7468 |
| AUV62794.1 | MF327003_p53 | tail fiber protein | phrog_4277 | tail fiber protein | tail | 1 | 39729 | 42107 |
| AUV62748.1 | MF327003_p7 | hypothetical protein | phrog_9967 | unknown function | unknown function | -1 | 4260 | 4571 |
| AUV62766.1 | MF327003_p25 | hypothetical protein | phrog_850 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 12570 | 13985 |
| AUV62841.1 | MF327003_p100 | hypothetical protein | phrog_4726 | unknown function | unknown function | 1 | 70606 | 70884 |
| AUV62788.1 | MF327003_p47 | baseplate assembly protein | phrog_11 | baseplate spike | tail | 1 | 34820 | 35461 |
| AUV62773.1 | MF327003_p32 | head maturation protease | phrog_53 | head maturation protease | head and packaging | 1 | 23134 | 24483 |
| AUV62827.1 | MF327003_p86 | hypothetical protein | phrog_4007 | unknown function | unknown function | 1 | 60895 | 61221 |
| AUV62747.1 | MF327003_p6 | hypothetical protein | phrog_4713 | unknown function | unknown function | -1 | 3839 | 4273 |
| AUV62779.1 | MF327003_p38 | hypothetical protein | phrog_4082 | unknown function | unknown function | 1 | 27335 | 27934 |
| AUV62830.1 | MF327003_p89 | hypothetical protein | phrog_2652 | unknown function | unknown function | 1 | 63969 | 64166 |
| AUV62838.1 | MF327003_p97 | hypothetical protein | phrog_4425 | unknown function | unknown function | 1 | 69465 | 69722 |
| AUV62809.1 | MF327003_p68 | hypothetical protein | phrog_902 | unknown function | unknown function | -1 | 48396 | 48641 |
| AUV62742.1 | MF327003_p1 | hypothetical protein | phrog_7482 | unknown function | unknown function | 1 | 198 | 338 |
| AUV62751.1 | MF327003_p10 | hypothetical protein | phrog_6279 | unknown function | unknown function | -1 | 5272 | 5364 |
| AUV62796.1 | MF327003_p55 | holin | phrog_4038 | unknown function | unknown function | 1 | 42388 | 42762 |
| AUV62853.1 | MF327003_p112 | hypothetical protein | phrog_4391 | unknown function | unknown function | 1 | 80141 | 80410 |
| AUV62757.1 | MF327003_p16 | hypothetical protein | phrog_4385 | unknown function | unknown function | -1 | 7807 | 8100 |
| AUV62817.1 | MF327003_p76 | hypothetical protein | phrog_4469 | unknown function | unknown function | 1 | 54347 | 54547 |
| AUV62844.1 | MF327003_p103 | hypothetical protein | phrog_4262 | unknown function | unknown function | 1 | 73705 | 74040 |
| AUV62863.1 | MF327003_p122 | hypothetical protein | phrog_4375 | unknown function | unknown function | 1 | 83685 | 84032 |
| AUV62839.1 | MF327003_p98 | hypothetical protein | phrog_4462 | unknown function | unknown function | 1 | 69734 | 70045 |
| AUV62772.1 | MF327003_p31 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 22790 | 23122 |
| AUV62865.1 | MF327003_p124 | hypothetical protein | phrog_4327 | unknown function | unknown function | 1 | 84455 | 84862 |
| AUV62822.1 | MF327003_p81 | exodeoxyribonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 57927 | 58973 |
| AUV62792.1 | MF327003_p51 | hypothetical protein | phrog_4141 | unknown function | unknown function | 1 | 38206 | 38505 |
| AUV62869.1 | MF327003_p128 | hypothetical protein | phrog_10118 | unknown function | unknown function | 1 | 86222 | 86443 |
| AUV62819.1 | MF327003_p78 | hypothetical protein | phrog_4982 | unknown function | unknown function | 1 | 56506 | 56784 |
| AUV62802.1 | MF327003_p61 | hypothetical protein | phrog_4116 | unknown function | unknown function | -1 | 45515 | 45874 |
| AUV62774.1 | MF327003_p33 | structural protein | phrog_4146 | tail protease | other | 1 | 24496 | 24873 |
| AUV62756.1 | MF327003_p15 | hypothetical protein | phrog_4040 | unknown function | unknown function | -1 | 7470 | 7814 |
| AUV62760.1 | MF327003_p19 | lysin | phrog_7 | endolysin | lysis | -1 | 8912 | 9376 |
| AUV62783.1 | MF327003_p42 | tape measure chaperone | phrog_4963 | tail assembly chaperone | tail | 1 | 30235 | 30462 |
| AUV62808.1 | MF327003_p67 | hypothetical protein | phrog_4427 | unknown function | unknown function | -1 | 48188 | 48409 |
| AUV62797.1 | MF327003_p56 | thymidylate synthase | phrog_160 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 42798 | 43697 |
| AUV62810.1 | MF327003_p69 | hypothetical protein | phrog_9065 | unknown function | unknown function | -1 | 48652 | 48903 |
| AUV62753.1 | MF327003_p12 | hypothetical protein | phrog_4459 | unknown function | unknown function | -1 | 5849 | 6067 |
| AUV62832.1 | MF327003_p91 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 65236 | 65478 |
| AUV62798.1 | MF327003_p57 | dihydrofolate reductase | phrog_316 | dihydrofolate reductase | DNA, RNA and nucleotide metabolism | -1 | 43699 | 44244 |
| AUV62800.1 | MF327003_p59 | hypothetical protein | phrog_4422 | unknown function | unknown function | -1 | 44510 | 45025 |
| AUV62820.1 | MF327003_p79 | hypothetical protein | phrog_4424 | unknown function | unknown function | 1 | 56781 | 56918 |
| AUV62807.1 | MF327003_p66 | hypothetical protein | phrog_20095 | unknown function | unknown function | -1 | 48093 | 48191 |
| AUV62815.1 | MF327003_p74 | hypothetical protein | phrog_4251 | minor tail protein | tail | 1 | 52751 | 53545 |
| AUV62746.1 | MF327003_p5 | hypothetical protein | phrog_4330 | unknown function | unknown function | -1 | 3171 | 3836 |
| AUV62833.1 | MF327003_p92 | membrane protein | phrog_4532 | unknown function | unknown function | 1 | 65471 | 65671 |
| AUV62842.1 | MF327003_p101 | ribose-phosphate pyrophosphokinase | phrog_619 | ribose-phosphate pyrophosphokinase | other | 1 | 70895 | 71776 |
| AUV62864.1 | MF327003_p123 | hypothetical protein | phrog_3436 | unknown function | unknown function | 1 | 84092 | 84364 |
| AUV62847.1 | MF327003_p106 | rIIB protein | phrog_609 | RIIB lysis inhibitor | lysis | 1 | 76716 | 77837 |
| AUV62758.1 | MF327003_p17 | hypothetical protein | phrog_4348 | unknown function | unknown function | -1 | 8102 | 8470 |
| AUV62806.1 | MF327003_p65 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | -1 | 46996 | 48096 |
| AUV62859.1 | MF327003_p118 | hypothetical protein | phrog_15689 | unknown function | unknown function | -1 | 82472 | 82708 |