Genomic map of Shigella phage Sf17 (MF327004)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MF327004
Definition
Shigella phage Sf17, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Ounavirinae; Mooglevirus; Shigella virus Sf17.
DB of origin
NUCCORE
Length
90092
Host Name
Shigella boydii
Host domain
Bacteria
Is prophage?
undef
Number of proteins
138
%GC
39.03
Number of singletons
2
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AUV62999.1 MF327004_p127 hypothetical protein phrog_4375 unknown function unknown function 1 85498 85872
AUV62894.1 MF327004_p22 hypothetical protein phrog_4114 unknown function unknown function 1 10829 11200
AUV62983.1 MF327004_p111 rIIB protein phrog_609 RIIB lysis inhibitor lysis 1 77677 78807
AUV62905.1 MF327004_p33 hypothetical protein phrog_4146 tail protease other 1 23623 24000
AUV63005.1 MF327004_p133 hypothetical protein phrog_10118 unknown function unknown function 1 87940 88161
AUV62902.1 MF327004_p30 hypothetical protein phrog_3977 unknown function unknown function 1 21420 21920
AUV62880.1 MF327004_p8 hypothetical protein phrog_6279 unknown function unknown function -1 4209 4301
AUV62874.1 MF327004_p2 hypothetical protein singleton unknown function unknown function 1 442 618
AUV62873.1 MF327004_p1 hypothetical protein phrog_7022 unknown function unknown function 1 113 376
AUV62969.1 MF327004_p97 hypothetical protein phrog_8826 unknown function unknown function 1 68697 68954
AUV62941.1 MF327004_p69 hypothetical protein phrog_902 unknown function unknown function -1 49156 49401
AUV62933.1 MF327004_p61 hypothetical protein phrog_4116 unknown function unknown function -1 44643 45002
AUV62888.1 MF327004_p16 hypothetical protein phrog_4266 unknown function unknown function -1 7412 7822
AUV62986.1 MF327004_p114 hypothetical protein phrog_2267 unknown function unknown function 1 80142 80606
AUV62937.1 MF327004_p65 hypothetical protein phrog_5926 unknown function unknown function -1 46240 46680
AUV62893.1 MF327004_p21 hypothetical protein phrog_5064 unknown function unknown function -1 10205 10438
AUV62883.1 MF327004_p11 hypothetical protein phrog_5380 unknown function unknown function -1 5001 5741
AUV62922.1 MF327004_p50 baseplate assembly protein phrog_4017 baseplate protein tail 1 36476 37333
AUV62975.1 MF327004_p103 hypothetical protein phrog_3500 unknown function unknown function 1 70860 71375
AUV62940.1 MF327004_p68 hypothetical protein phrog_4427 unknown function unknown function -1 48948 49154
AUV62878.1 MF327004_p6 hypothetical protein phrog_9967 unknown function unknown function -1 3665 3961
AUV63001.1 MF327004_p129 hypothetical protein phrog_4327 unknown function unknown function 1 86237 86644
AUV62910.1 MF327004_p38 hypothetical protein phrog_4082 unknown function unknown function 1 26462 27061
AUV62955.1 MF327004_p83 hypothetical protein phrog_3877 unknown function unknown function 1 58075 58938
AUV62899.1 MF327004_p27 hypothetical protein phrog_4397 unknown function unknown function 1 18112 18318
AUV62903.1 MF327004_p31 hypothetical protein phrog_240 head protein head and packaging 1 21920 22252
AUV62939.1 MF327004_p67 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism -1 47851 48951
AUV62897.1 MF327004_p25 hypothetical protein phrog_14202 unknown function unknown function 1 16310 16537
AUV62943.1 MF327004_p71 hypothetical protein phrog_2381 unknown function unknown function -1 49653 49796
AUV62928.1 MF327004_p56 thymidylate synthase phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism -1 41926 42825
AUV62997.1 MF327004_p125 hypothetical protein phrog_4190 unknown function unknown function 1 84612 85124
AUV63008.1 MF327004_p136 hypothetical protein phrog_7482 unknown function unknown function 1 89024 89155
AUV62978.1 MF327004_p106 nicotinamide phosphoribosyltransferase phrog_448 nicotinamide phosphoribosyl transferase other 1 72583 74400
AUV62882.1 MF327004_p10 hypothetical protein phrog_4459 unknown function unknown function -1 4786 5004
AUV62919.1 MF327004_p47 tail spike protein phrog_11 baseplate spike tail 1 33947 34588
AUV62879.1 MF327004_p7 hypothetical protein phrog_4457 unknown function unknown function -1 4003 4212
AUV62973.1 MF327004_p101 hypothetical protein phrog_4425 unknown function unknown function 1 70227 70484
AUV62984.1 MF327004_p112 lysin phrog_600 unknown function unknown function 1 78909 79457
AUV63007.1 MF327004_p135 hypothetical protein phrog_4318 unknown function unknown function 1 88486 88827
AUV62938.1 MF327004_p66 hypothetical protein phrog_4652 unknown function unknown function -1 46683 47270
AUV62971.1 MF327004_p99 anaerobic NTP reductase-activating protein phrog_626 anaerobic ribonucleotide reductase small subunit DNA, RNA and nucleotide metabolism 1 69443 69928
AUV62949.1 MF327004_p77 hypothetical protein phrog_4251 minor tail protein tail 1 53822 54616
AUV62916.1 MF327004_p44 hypothetical protein phrog_3721 unknown function unknown function 1 31826 32632
AUV62924.1 MF327004_p52 tail fiber protein phrog_2097 tail fiber protein tail 1 37635 38810
AUV62977.1 MF327004_p105 ribose-phosphate pyrophosphokinase phrog_619 ribose-phosphate pyrophosphokinase other 1 71657 72538
AUV62895.1 MF327004_p23 hypothetical protein phrog_850 RNA-binding protein DNA, RNA and nucleotide metabolism 1 11277 12692
AUV62980.1 MF327004_p108 hypothetical protein phrog_4262 unknown function unknown function 1 74666 75001
AUV62885.1 MF327004_p13 hypothetical protein phrog_4040 unknown function unknown function -1 6407 6751
AUV62925.1 MF327004_p53 tail fiber protein phrog_4277 tail fiber protein tail 1 38856 41234
AUV62965.1 MF327004_p93 glutaredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 65825 66067
AUV62875.1 MF327004_p3 hypothetical protein phrog_4559 unknown function unknown function 1 691 942
AUV62918.1 MF327004_p46 hypothetical protein phrog_196 baseplate hub tail 1 32973 33950
AUV62998.1 MF327004_p126 hypothetical protein phrog_4401 unknown function unknown function 1 85208 85504
AUV62974.1 MF327004_p102 endonuclease phrog_4462 unknown function unknown function 1 70496 70807
AUV62976.1 MF327004_p104 hypothetical protein phrog_4726 unknown function unknown function 1 71368 71646
AUV62931.1 MF327004_p59 hypothetical protein phrog_4422 unknown function unknown function -1 43638 44153
AUV62951.1 MF327004_p79 hypothetical protein phrog_4469 unknown function unknown function 1 55418 55618
AUV62884.1 MF327004_p12 hypothetical protein phrog_4109 unknown function unknown function -1 5812 6405
AUV62979.1 MF327004_p107 hypothetical protein phrog_2375 unknown function unknown function 1 74454 74669
AUV62950.1 MF327004_p78 deoxynucleotide monophosphate kinase phrog_139 deoxynucleoside monophosphate kinase other 1 54674 55414
AUV62956.1 MF327004_p84 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 59001 60041
AUV62890.1 MF327004_p18 tail protein phrog_3995 tail protein tail -1 8328 9212
AUV62948.1 MF327004_p76 hypothetical protein phrog_4039 unknown function unknown function 1 53398 53838
AUV62989.1 MF327004_p117 hypothetical protein phrog_4391 unknown function unknown function 1 81166 81435
AUV62901.1 MF327004_p29 hypothetical protein phrog_113 portal protein head and packaging 1 19954 21420
AUV62908.1 MF327004_p36 hypothetical protein phrog_222 tail completion or Neck1 protein connector 1 25655 26089
AUV62898.1 MF327004_p26 hypothetical protein phrog_2114 unknown function unknown function 1 16982 17716
AUV62900.1 MF327004_p28 terminase large subunit phrog_979 terminase large subunit head and packaging 1 18340 19941
AUV63004.1 MF327004_p132 hypothetical protein phrog_4640 unknown function unknown function 1 87624 87854
AUV62920.1 MF327004_p48 baseplate wedge subunit phrog_120 baseplate wedge subunit tail 1 34588 35004
AUV62953.1 MF327004_p81 hypothetical protein phrog_4982 unknown function unknown function 1 57577 57855
AUV62887.1 MF327004_p15 hypothetical protein phrog_4348 unknown function unknown function -1 7039 7419
AUV62907.1 MF327004_p35 hypothetical protein phrog_1732 unknown function unknown function 1 25158 25607
AUV62988.1 MF327004_p116 o-spanin phrog_4180 unknown function unknown function 1 80972 81169
AUV63003.1 MF327004_p131 hypothetical protein phrog_3303 unknown function unknown function 1 87003 87560
AUV62912.1 MF327004_p40 hypothetical protein phrog_280 virion structural protein head and packaging 1 28429 28875
AUV62966.1 MF327004_p94 hypothetical protein phrog_4532 unknown function unknown function 1 66060 66260
AUV62917.1 MF327004_p45 hypothetical protein phrog_349 virion structural protein head and packaging 1 32632 32973
AUV62876.1 MF327004_p4 hypothetical protein phrog_4330 unknown function unknown function -1 2546 3211
AUV62892.1 MF327004_p20 hypothetical protein phrog_4034 unknown function unknown function -1 9621 10211
AUV62936.1 MF327004_p64 hypothetical protein phrog_4332 unknown function unknown function -1 45502 45882
AUV62946.1 MF327004_p74 hypothetical protein phrog_4230 unknown function unknown function -1 50177 50377
AUV62962.1 MF327004_p90 ribonucleoside triphosphate reductase large subunit phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism 1 62190 64424
AUV62921.1 MF327004_p49 baseplate assembly protein phrog_6 baseplate wedge subunit tail 1 35004 36473
AUV62891.1 MF327004_p19 hypothetical protein phrog_4463 unknown function unknown function -1 9209 9577
AUV62967.1 MF327004_p95 anaerobic NTP reductase phrog_487 NrdD-like anaerobic ribonucleotide reductase large subunit moron, auxiliary metabolic gene and host takeover 1 66310 68454
AUV62993.1 MF327004_p121 hypothetical protein phrog_335 phosphatase other 1 82201 82995
AUV62944.1 MF327004_p72 hypothetical protein phrog_3474 unknown function unknown function -1 49783 49974
AUV62960.1 MF327004_p88 hypothetical protein phrog_4007 unknown function unknown function 1 61484 61810
AUV62930.1 MF327004_p58 hypothetical protein phrog_2993 unknown function unknown function -1 43369 43608
AUV62945.1 MF327004_p73 hypothetical protein phrog_5180 unknown function unknown function -1 49971 50180
AUV63000.1 MF327004_p128 hypothetical protein phrog_3436 unknown function unknown function 1 85875 86147
AUV62923.1 MF327004_p51 hypothetical protein phrog_4141 unknown function unknown function 1 37333 37632
AUV62961.1 MF327004_p89 hypothetical protein phrog_3358 unknown function unknown function 1 61803 62138
AUV62958.1 MF327004_p86 hypothetical protein phrog_4442 unknown function unknown function 1 60533 60748
AUV62991.1 MF327004_p119 hypothetical protein phrog_6082 unknown function unknown function 1 81746 82006
AUV62913.1 MF327004_p41 tail tapemeasure chaperone phrog_1613 tail assembly chaperone tail 1 28952 29353
AUV62968.1 MF327004_p96 hypothetical protein phrog_24391 unknown function unknown function 1 68518 68700
AUV62906.1 MF327004_p34 major capsid protein phrog_29 major head protein head and packaging 1 24032 25135
AUV62904.1 MF327004_p32 head maturation protease phrog_53 head maturation protease head and packaging 1 22264 23610
AUV63006.1 MF327004_p134 hypothetical protein phrog_13570 unknown function unknown function 1 88203 88400
AUV62954.1 MF327004_p82 hypothetical protein phrog_4424 unknown function unknown function 1 57852 57989
AUV62987.1 MF327004_p115 i-spanin phrog_1152 Rz-like spanin lysis 1 80659 81006
AUV62934.1 MF327004_p62 transcriptional regulator phrog_1373 transcriptional regulator transcription regulation -1 45004 45303
AUV62881.1 MF327004_p9 hypothetical protein phrog_4343 unknown function unknown function -1 4283 4789
AUV62929.1 MF327004_p57 dihydrofolate reductase phrog_316 dihydrofolate reductase DNA, RNA and nucleotide metabolism -1 42827 43372
AUV62995.1 MF327004_p123 hypothetical protein phrog_4495 unknown function unknown function 1 83791 84171
AUV62914.1 MF327004_p42 tail tapemeasure chaperone phrog_4963 tail assembly chaperone tail 1 29362 29589
AUV62994.1 MF327004_p122 hypothetical protein phrog_5293 unknown function unknown function 1 83500 83706
AUV62915.1 MF327004_p43 tail tapemeasure protein phrog_4036 tail length tape measure protein tail 1 29589 31826
AUV62981.1 MF327004_p109 hypothetical protein phrog_3931 unknown function unknown function 1 74983 75162
AUV62996.1 MF327004_p124 hypothetical protein phrog_5089 unknown function unknown function 1 84263 84520
AUV62889.1 MF327004_p17 lysin phrog_7 endolysin lysis -1 7861 8325
AUV62877.1 MF327004_p5 hypothetical protein phrog_4713 unknown function unknown function -1 3214 3678
AUV62942.1 MF327004_p70 hypothetical protein phrog_9065 unknown function unknown function -1 49412 49663
AUV63009.1 MF327004_p137 hypothetical protein phrog_4725 unknown function unknown function 1 89185 89712
AUV62952.1 MF327004_p80 DNA primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 55611 57602
AUV62992.1 MF327004_p120 hypothetical protein phrog_2210 unknown function unknown function 1 81999 82199
AUV62896.1 MF327004_p24 hypothetical protein phrog_10765 unknown function unknown function 1 16053 16265
AUV62926.1 MF327004_p54 hypothetical protein phrog_402 unknown function unknown function 1 41321 41515
AUV62982.1 MF327004_p110 rIIA protein phrog_612 RIIA lysis inhibitor lysis 1 75225 77597
AUV62963.1 MF327004_p91 hypothetical protein phrog_2652 unknown function unknown function 1 64480 64755
AUV62927.1 MF327004_p55 holin phrog_4038 unknown function unknown function 1 41515 41889
AUV62911.1 MF327004_p39 hypothetical protein phrog_205 tail sheath tail 1 27062 28414
AUV63010.1 MF327004_p138 hypothetical protein phrog_7022 unknown function unknown function 1 89778 90041
AUV62990.1 MF327004_p118 hypothetical protein phrog_4453 unknown function unknown function 1 81445 81771
AUV62886.1 MF327004_p14 hypothetical protein phrog_4385 unknown function unknown function -1 6744 7037
AUV62964.1 MF327004_p92 ribonucleoside triphosphate reductase small subunit phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism 1 64752 65825
AUV62959.1 MF327004_p87 phosphoribosyl-ATP pyrophosphohydrolase-like protein phrog_2144 MazG-like pyrophosphatase other 1 60748 61503
AUV62957.1 MF327004_p85 GIY-YIG homing endonuclease phrog_447 NAD synthetase other 1 60031 60531
AUV62935.1 MF327004_p63 hypothetical protein phrog_4473 unknown function unknown function -1 45296 45499
AUV62909.1 MF327004_p37 hypothetical protein phrog_2874 unknown function unknown function 1 26086 26487
AUV62970.1 MF327004_p98 hypothetical protein phrog_4382 unknown function unknown function 1 69075 69443
AUV62932.1 MF327004_p60 hypothetical protein phrog_9143 unknown function unknown function -1 44155 44658
AUV62972.1 MF327004_p100 hypothetical protein phrog_5082 unknown function unknown function 1 69954 70211
AUV63002.1 MF327004_p130 hypothetical protein singleton unknown function unknown function 1 86751 86918
AUV62985.1 MF327004_p113 polynucleotide kinase phrog_3970 polynucleotide kinase other 1 79435 80130
AUV62947.1 MF327004_p75 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 50439 53138