| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF327004 |
Definition |
Shigella phage Sf17, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Ounavirinae; Mooglevirus; Shigella virus Sf17. |
DB of origin |
NUCCORE |
Length |
90092 |
Host Name |
Shigella boydii |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
138 |
%GC |
39.03 |
Number of singletons |
2 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AUV62999.1 | MF327004_p127 | hypothetical protein | phrog_4375 | unknown function | unknown function | 1 | 85498 | 85872 |
| AUV62894.1 | MF327004_p22 | hypothetical protein | phrog_4114 | unknown function | unknown function | 1 | 10829 | 11200 |
| AUV62983.1 | MF327004_p111 | rIIB protein | phrog_609 | RIIB lysis inhibitor | lysis | 1 | 77677 | 78807 |
| AUV62905.1 | MF327004_p33 | hypothetical protein | phrog_4146 | tail protease | other | 1 | 23623 | 24000 |
| AUV63005.1 | MF327004_p133 | hypothetical protein | phrog_10118 | unknown function | unknown function | 1 | 87940 | 88161 |
| AUV62902.1 | MF327004_p30 | hypothetical protein | phrog_3977 | unknown function | unknown function | 1 | 21420 | 21920 |
| AUV62880.1 | MF327004_p8 | hypothetical protein | phrog_6279 | unknown function | unknown function | -1 | 4209 | 4301 |
| AUV62874.1 | MF327004_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 442 | 618 |
| AUV62873.1 | MF327004_p1 | hypothetical protein | phrog_7022 | unknown function | unknown function | 1 | 113 | 376 |
| AUV62969.1 | MF327004_p97 | hypothetical protein | phrog_8826 | unknown function | unknown function | 1 | 68697 | 68954 |
| AUV62941.1 | MF327004_p69 | hypothetical protein | phrog_902 | unknown function | unknown function | -1 | 49156 | 49401 |
| AUV62933.1 | MF327004_p61 | hypothetical protein | phrog_4116 | unknown function | unknown function | -1 | 44643 | 45002 |
| AUV62888.1 | MF327004_p16 | hypothetical protein | phrog_4266 | unknown function | unknown function | -1 | 7412 | 7822 |
| AUV62986.1 | MF327004_p114 | hypothetical protein | phrog_2267 | unknown function | unknown function | 1 | 80142 | 80606 |
| AUV62937.1 | MF327004_p65 | hypothetical protein | phrog_5926 | unknown function | unknown function | -1 | 46240 | 46680 |
| AUV62893.1 | MF327004_p21 | hypothetical protein | phrog_5064 | unknown function | unknown function | -1 | 10205 | 10438 |
| AUV62883.1 | MF327004_p11 | hypothetical protein | phrog_5380 | unknown function | unknown function | -1 | 5001 | 5741 |
| AUV62922.1 | MF327004_p50 | baseplate assembly protein | phrog_4017 | baseplate protein | tail | 1 | 36476 | 37333 |
| AUV62975.1 | MF327004_p103 | hypothetical protein | phrog_3500 | unknown function | unknown function | 1 | 70860 | 71375 |
| AUV62940.1 | MF327004_p68 | hypothetical protein | phrog_4427 | unknown function | unknown function | -1 | 48948 | 49154 |
| AUV62878.1 | MF327004_p6 | hypothetical protein | phrog_9967 | unknown function | unknown function | -1 | 3665 | 3961 |
| AUV63001.1 | MF327004_p129 | hypothetical protein | phrog_4327 | unknown function | unknown function | 1 | 86237 | 86644 |
| AUV62910.1 | MF327004_p38 | hypothetical protein | phrog_4082 | unknown function | unknown function | 1 | 26462 | 27061 |
| AUV62955.1 | MF327004_p83 | hypothetical protein | phrog_3877 | unknown function | unknown function | 1 | 58075 | 58938 |
| AUV62899.1 | MF327004_p27 | hypothetical protein | phrog_4397 | unknown function | unknown function | 1 | 18112 | 18318 |
| AUV62903.1 | MF327004_p31 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 21920 | 22252 |
| AUV62939.1 | MF327004_p67 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | -1 | 47851 | 48951 |
| AUV62897.1 | MF327004_p25 | hypothetical protein | phrog_14202 | unknown function | unknown function | 1 | 16310 | 16537 |
| AUV62943.1 | MF327004_p71 | hypothetical protein | phrog_2381 | unknown function | unknown function | -1 | 49653 | 49796 |
| AUV62928.1 | MF327004_p56 | thymidylate synthase | phrog_160 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 41926 | 42825 |
| AUV62997.1 | MF327004_p125 | hypothetical protein | phrog_4190 | unknown function | unknown function | 1 | 84612 | 85124 |
| AUV63008.1 | MF327004_p136 | hypothetical protein | phrog_7482 | unknown function | unknown function | 1 | 89024 | 89155 |
| AUV62978.1 | MF327004_p106 | nicotinamide phosphoribosyltransferase | phrog_448 | nicotinamide phosphoribosyl transferase | other | 1 | 72583 | 74400 |
| AUV62882.1 | MF327004_p10 | hypothetical protein | phrog_4459 | unknown function | unknown function | -1 | 4786 | 5004 |
| AUV62919.1 | MF327004_p47 | tail spike protein | phrog_11 | baseplate spike | tail | 1 | 33947 | 34588 |
| AUV62879.1 | MF327004_p7 | hypothetical protein | phrog_4457 | unknown function | unknown function | -1 | 4003 | 4212 |
| AUV62973.1 | MF327004_p101 | hypothetical protein | phrog_4425 | unknown function | unknown function | 1 | 70227 | 70484 |
| AUV62984.1 | MF327004_p112 | lysin | phrog_600 | unknown function | unknown function | 1 | 78909 | 79457 |
| AUV63007.1 | MF327004_p135 | hypothetical protein | phrog_4318 | unknown function | unknown function | 1 | 88486 | 88827 |
| AUV62938.1 | MF327004_p66 | hypothetical protein | phrog_4652 | unknown function | unknown function | -1 | 46683 | 47270 |
| AUV62971.1 | MF327004_p99 | anaerobic NTP reductase-activating protein | phrog_626 | anaerobic ribonucleotide reductase small subunit | DNA, RNA and nucleotide metabolism | 1 | 69443 | 69928 |
| AUV62949.1 | MF327004_p77 | hypothetical protein | phrog_4251 | minor tail protein | tail | 1 | 53822 | 54616 |
| AUV62916.1 | MF327004_p44 | hypothetical protein | phrog_3721 | unknown function | unknown function | 1 | 31826 | 32632 |
| AUV62924.1 | MF327004_p52 | tail fiber protein | phrog_2097 | tail fiber protein | tail | 1 | 37635 | 38810 |
| AUV62977.1 | MF327004_p105 | ribose-phosphate pyrophosphokinase | phrog_619 | ribose-phosphate pyrophosphokinase | other | 1 | 71657 | 72538 |
| AUV62895.1 | MF327004_p23 | hypothetical protein | phrog_850 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 11277 | 12692 |
| AUV62980.1 | MF327004_p108 | hypothetical protein | phrog_4262 | unknown function | unknown function | 1 | 74666 | 75001 |
| AUV62885.1 | MF327004_p13 | hypothetical protein | phrog_4040 | unknown function | unknown function | -1 | 6407 | 6751 |
| AUV62925.1 | MF327004_p53 | tail fiber protein | phrog_4277 | tail fiber protein | tail | 1 | 38856 | 41234 |
| AUV62965.1 | MF327004_p93 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 65825 | 66067 |
| AUV62875.1 | MF327004_p3 | hypothetical protein | phrog_4559 | unknown function | unknown function | 1 | 691 | 942 |
| AUV62918.1 | MF327004_p46 | hypothetical protein | phrog_196 | baseplate hub | tail | 1 | 32973 | 33950 |
| AUV62998.1 | MF327004_p126 | hypothetical protein | phrog_4401 | unknown function | unknown function | 1 | 85208 | 85504 |
| AUV62974.1 | MF327004_p102 | endonuclease | phrog_4462 | unknown function | unknown function | 1 | 70496 | 70807 |
| AUV62976.1 | MF327004_p104 | hypothetical protein | phrog_4726 | unknown function | unknown function | 1 | 71368 | 71646 |
| AUV62931.1 | MF327004_p59 | hypothetical protein | phrog_4422 | unknown function | unknown function | -1 | 43638 | 44153 |
| AUV62951.1 | MF327004_p79 | hypothetical protein | phrog_4469 | unknown function | unknown function | 1 | 55418 | 55618 |
| AUV62884.1 | MF327004_p12 | hypothetical protein | phrog_4109 | unknown function | unknown function | -1 | 5812 | 6405 |
| AUV62979.1 | MF327004_p107 | hypothetical protein | phrog_2375 | unknown function | unknown function | 1 | 74454 | 74669 |
| AUV62950.1 | MF327004_p78 | deoxynucleotide monophosphate kinase | phrog_139 | deoxynucleoside monophosphate kinase | other | 1 | 54674 | 55414 |
| AUV62956.1 | MF327004_p84 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 59001 | 60041 |
| AUV62890.1 | MF327004_p18 | tail protein | phrog_3995 | tail protein | tail | -1 | 8328 | 9212 |
| AUV62948.1 | MF327004_p76 | hypothetical protein | phrog_4039 | unknown function | unknown function | 1 | 53398 | 53838 |
| AUV62989.1 | MF327004_p117 | hypothetical protein | phrog_4391 | unknown function | unknown function | 1 | 81166 | 81435 |
| AUV62901.1 | MF327004_p29 | hypothetical protein | phrog_113 | portal protein | head and packaging | 1 | 19954 | 21420 |
| AUV62908.1 | MF327004_p36 | hypothetical protein | phrog_222 | tail completion or Neck1 protein | connector | 1 | 25655 | 26089 |
| AUV62898.1 | MF327004_p26 | hypothetical protein | phrog_2114 | unknown function | unknown function | 1 | 16982 | 17716 |
| AUV62900.1 | MF327004_p28 | terminase large subunit | phrog_979 | terminase large subunit | head and packaging | 1 | 18340 | 19941 |
| AUV63004.1 | MF327004_p132 | hypothetical protein | phrog_4640 | unknown function | unknown function | 1 | 87624 | 87854 |
| AUV62920.1 | MF327004_p48 | baseplate wedge subunit | phrog_120 | baseplate wedge subunit | tail | 1 | 34588 | 35004 |
| AUV62953.1 | MF327004_p81 | hypothetical protein | phrog_4982 | unknown function | unknown function | 1 | 57577 | 57855 |
| AUV62887.1 | MF327004_p15 | hypothetical protein | phrog_4348 | unknown function | unknown function | -1 | 7039 | 7419 |
| AUV62907.1 | MF327004_p35 | hypothetical protein | phrog_1732 | unknown function | unknown function | 1 | 25158 | 25607 |
| AUV62988.1 | MF327004_p116 | o-spanin | phrog_4180 | unknown function | unknown function | 1 | 80972 | 81169 |
| AUV63003.1 | MF327004_p131 | hypothetical protein | phrog_3303 | unknown function | unknown function | 1 | 87003 | 87560 |
| AUV62912.1 | MF327004_p40 | hypothetical protein | phrog_280 | virion structural protein | head and packaging | 1 | 28429 | 28875 |
| AUV62966.1 | MF327004_p94 | hypothetical protein | phrog_4532 | unknown function | unknown function | 1 | 66060 | 66260 |
| AUV62917.1 | MF327004_p45 | hypothetical protein | phrog_349 | virion structural protein | head and packaging | 1 | 32632 | 32973 |
| AUV62876.1 | MF327004_p4 | hypothetical protein | phrog_4330 | unknown function | unknown function | -1 | 2546 | 3211 |
| AUV62892.1 | MF327004_p20 | hypothetical protein | phrog_4034 | unknown function | unknown function | -1 | 9621 | 10211 |
| AUV62936.1 | MF327004_p64 | hypothetical protein | phrog_4332 | unknown function | unknown function | -1 | 45502 | 45882 |
| AUV62946.1 | MF327004_p74 | hypothetical protein | phrog_4230 | unknown function | unknown function | -1 | 50177 | 50377 |
| AUV62962.1 | MF327004_p90 | ribonucleoside triphosphate reductase large subunit | phrog_84 | ribonucleoside-diphosphate reductase large subunit | DNA, RNA and nucleotide metabolism | 1 | 62190 | 64424 |
| AUV62921.1 | MF327004_p49 | baseplate assembly protein | phrog_6 | baseplate wedge subunit | tail | 1 | 35004 | 36473 |
| AUV62891.1 | MF327004_p19 | hypothetical protein | phrog_4463 | unknown function | unknown function | -1 | 9209 | 9577 |
| AUV62967.1 | MF327004_p95 | anaerobic NTP reductase | phrog_487 | NrdD-like anaerobic ribonucleotide reductase large subunit | moron, auxiliary metabolic gene and host takeover | 1 | 66310 | 68454 |
| AUV62993.1 | MF327004_p121 | hypothetical protein | phrog_335 | phosphatase | other | 1 | 82201 | 82995 |
| AUV62944.1 | MF327004_p72 | hypothetical protein | phrog_3474 | unknown function | unknown function | -1 | 49783 | 49974 |
| AUV62960.1 | MF327004_p88 | hypothetical protein | phrog_4007 | unknown function | unknown function | 1 | 61484 | 61810 |
| AUV62930.1 | MF327004_p58 | hypothetical protein | phrog_2993 | unknown function | unknown function | -1 | 43369 | 43608 |
| AUV62945.1 | MF327004_p73 | hypothetical protein | phrog_5180 | unknown function | unknown function | -1 | 49971 | 50180 |
| AUV63000.1 | MF327004_p128 | hypothetical protein | phrog_3436 | unknown function | unknown function | 1 | 85875 | 86147 |
| AUV62923.1 | MF327004_p51 | hypothetical protein | phrog_4141 | unknown function | unknown function | 1 | 37333 | 37632 |
| AUV62961.1 | MF327004_p89 | hypothetical protein | phrog_3358 | unknown function | unknown function | 1 | 61803 | 62138 |
| AUV62958.1 | MF327004_p86 | hypothetical protein | phrog_4442 | unknown function | unknown function | 1 | 60533 | 60748 |
| AUV62991.1 | MF327004_p119 | hypothetical protein | phrog_6082 | unknown function | unknown function | 1 | 81746 | 82006 |
| AUV62913.1 | MF327004_p41 | tail tapemeasure chaperone | phrog_1613 | tail assembly chaperone | tail | 1 | 28952 | 29353 |
| AUV62968.1 | MF327004_p96 | hypothetical protein | phrog_24391 | unknown function | unknown function | 1 | 68518 | 68700 |
| AUV62906.1 | MF327004_p34 | major capsid protein | phrog_29 | major head protein | head and packaging | 1 | 24032 | 25135 |
| AUV62904.1 | MF327004_p32 | head maturation protease | phrog_53 | head maturation protease | head and packaging | 1 | 22264 | 23610 |
| AUV63006.1 | MF327004_p134 | hypothetical protein | phrog_13570 | unknown function | unknown function | 1 | 88203 | 88400 |
| AUV62954.1 | MF327004_p82 | hypothetical protein | phrog_4424 | unknown function | unknown function | 1 | 57852 | 57989 |
| AUV62987.1 | MF327004_p115 | i-spanin | phrog_1152 | Rz-like spanin | lysis | 1 | 80659 | 81006 |
| AUV62934.1 | MF327004_p62 | transcriptional regulator | phrog_1373 | transcriptional regulator | transcription regulation | -1 | 45004 | 45303 |
| AUV62881.1 | MF327004_p9 | hypothetical protein | phrog_4343 | unknown function | unknown function | -1 | 4283 | 4789 |
| AUV62929.1 | MF327004_p57 | dihydrofolate reductase | phrog_316 | dihydrofolate reductase | DNA, RNA and nucleotide metabolism | -1 | 42827 | 43372 |
| AUV62995.1 | MF327004_p123 | hypothetical protein | phrog_4495 | unknown function | unknown function | 1 | 83791 | 84171 |
| AUV62914.1 | MF327004_p42 | tail tapemeasure chaperone | phrog_4963 | tail assembly chaperone | tail | 1 | 29362 | 29589 |
| AUV62994.1 | MF327004_p122 | hypothetical protein | phrog_5293 | unknown function | unknown function | 1 | 83500 | 83706 |
| AUV62915.1 | MF327004_p43 | tail tapemeasure protein | phrog_4036 | tail length tape measure protein | tail | 1 | 29589 | 31826 |
| AUV62981.1 | MF327004_p109 | hypothetical protein | phrog_3931 | unknown function | unknown function | 1 | 74983 | 75162 |
| AUV62996.1 | MF327004_p124 | hypothetical protein | phrog_5089 | unknown function | unknown function | 1 | 84263 | 84520 |
| AUV62889.1 | MF327004_p17 | lysin | phrog_7 | endolysin | lysis | -1 | 7861 | 8325 |
| AUV62877.1 | MF327004_p5 | hypothetical protein | phrog_4713 | unknown function | unknown function | -1 | 3214 | 3678 |
| AUV62942.1 | MF327004_p70 | hypothetical protein | phrog_9065 | unknown function | unknown function | -1 | 49412 | 49663 |
| AUV63009.1 | MF327004_p137 | hypothetical protein | phrog_4725 | unknown function | unknown function | 1 | 89185 | 89712 |
| AUV62952.1 | MF327004_p80 | DNA primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 55611 | 57602 |
| AUV62992.1 | MF327004_p120 | hypothetical protein | phrog_2210 | unknown function | unknown function | 1 | 81999 | 82199 |
| AUV62896.1 | MF327004_p24 | hypothetical protein | phrog_10765 | unknown function | unknown function | 1 | 16053 | 16265 |
| AUV62926.1 | MF327004_p54 | hypothetical protein | phrog_402 | unknown function | unknown function | 1 | 41321 | 41515 |
| AUV62982.1 | MF327004_p110 | rIIA protein | phrog_612 | RIIA lysis inhibitor | lysis | 1 | 75225 | 77597 |
| AUV62963.1 | MF327004_p91 | hypothetical protein | phrog_2652 | unknown function | unknown function | 1 | 64480 | 64755 |
| AUV62927.1 | MF327004_p55 | holin | phrog_4038 | unknown function | unknown function | 1 | 41515 | 41889 |
| AUV62911.1 | MF327004_p39 | hypothetical protein | phrog_205 | tail sheath | tail | 1 | 27062 | 28414 |
| AUV63010.1 | MF327004_p138 | hypothetical protein | phrog_7022 | unknown function | unknown function | 1 | 89778 | 90041 |
| AUV62990.1 | MF327004_p118 | hypothetical protein | phrog_4453 | unknown function | unknown function | 1 | 81445 | 81771 |
| AUV62886.1 | MF327004_p14 | hypothetical protein | phrog_4385 | unknown function | unknown function | -1 | 6744 | 7037 |
| AUV62964.1 | MF327004_p92 | ribonucleoside triphosphate reductase small subunit | phrog_86 | ribonucleoside diphosphate reductase small subunit | DNA, RNA and nucleotide metabolism | 1 | 64752 | 65825 |
| AUV62959.1 | MF327004_p87 | phosphoribosyl-ATP pyrophosphohydrolase-like protein | phrog_2144 | MazG-like pyrophosphatase | other | 1 | 60748 | 61503 |
| AUV62957.1 | MF327004_p85 | GIY-YIG homing endonuclease | phrog_447 | NAD synthetase | other | 1 | 60031 | 60531 |
| AUV62935.1 | MF327004_p63 | hypothetical protein | phrog_4473 | unknown function | unknown function | -1 | 45296 | 45499 |
| AUV62909.1 | MF327004_p37 | hypothetical protein | phrog_2874 | unknown function | unknown function | 1 | 26086 | 26487 |
| AUV62970.1 | MF327004_p98 | hypothetical protein | phrog_4382 | unknown function | unknown function | 1 | 69075 | 69443 |
| AUV62932.1 | MF327004_p60 | hypothetical protein | phrog_9143 | unknown function | unknown function | -1 | 44155 | 44658 |
| AUV62972.1 | MF327004_p100 | hypothetical protein | phrog_5082 | unknown function | unknown function | 1 | 69954 | 70211 |
| AUV63002.1 | MF327004_p130 | hypothetical protein | singleton | unknown function | unknown function | 1 | 86751 | 86918 |
| AUV62985.1 | MF327004_p113 | polynucleotide kinase | phrog_3970 | polynucleotide kinase | other | 1 | 79435 | 80130 |
| AUV62947.1 | MF327004_p75 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 50439 | 53138 |