Genomic map of Shigella phage Sf19 (MF327005)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MF327005
Definition
Shigella phage Sf19, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Ounavirinae; Mooglevirus; unclassified Mooglevirus.
DB of origin
NUCCORE
Length
90375
Host Name
Shigella flexneri
Host domain
Bacteria
Is prophage?
undef
Number of proteins
135
%GC
39.02
Number of singletons
1
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AUV56342.1 MF327005_p125 hypothetical protein phrog_4375 unknown function unknown function 1 85925 86272
AUV56289.1 MF327005_p72 hypothetical protein phrog_902 unknown function unknown function -1 50087 50332
AUV56265.1 MF327005_p48 hypothetical protein phrog_349 virion structural protein head and packaging 1 33563 33904
AUV56282.1 MF327005_p65 transcriptional regulator phrog_1373 transcriptional regulator transcription regulation -1 45935 46234
AUV56275.1 MF327005_p58 holin phrog_4038 unknown function unknown function 1 42446 42820
AUV56244.1 MF327005_p27 hypothetical protein phrog_14202 unknown function unknown function 1 16905 17132
AUV56335.1 MF327005_p118 hypothetical protein phrog_335 phosphatase other 1 82453 83247
AUV56333.1 MF327005_p116 hypothetical protein phrog_6082 unknown function unknown function 1 81998 82258
AUV56314.1 MF327005_p97 hypothetical protein phrog_4382 unknown function unknown function 1 69539 69907
AUV56242.1 MF327005_p25 hypothetical protein phrog_2255 HNH endonuclease DNA, RNA and nucleotide metabolism 1 15216 15620
AUV56239.1 MF327005_p22 hypothetical protein phrog_4114 unknown function unknown function 1 11007 11378
AUV56258.1 MF327005_p41 hypothetical protein phrog_4082 unknown function unknown function 1 27394 27993
AUV56247.1 MF327005_p30 terminase large subunit phrog_979 terminase large subunit head and packaging 1 18935 20536
AUV56253.1 MF327005_p36 hypothetical protein phrog_4146 tail protease other 1 24555 24932
AUV56323.1 MF327005_p106 hypothetical protein phrog_4262 unknown function unknown function 1 74918 75253
AUV56229.1 MF327005_p12 hypothetical protein phrog_4109 unknown function unknown function -1 5990 6583
AUV56235.1 MF327005_p18 tail protein phrog_3995 tail protein tail -1 8506 9390
AUV56260.1 MF327005_p43 hypothetical protein phrog_280 virion structural protein head and packaging 1 29360 29806
AUV56308.1 MF327005_p91 ribonucleoside triphosphate reductase, large subunit phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism 1 62827 65061
AUV56271.1 MF327005_p54 hypothetical protein phrog_4141 unknown function unknown function 1 38264 38563
AUV56257.1 MF327005_p40 hypothetical protein phrog_2874 unknown function unknown function 1 27018 27419
AUV56337.1 MF327005_p120 hypothetical protein phrog_14219 unknown function unknown function 1 83971 84132
AUV56269.1 MF327005_p52 baseplate assembly protein phrog_6 baseplate wedge subunit tail 1 35935 37404
AUV56310.1 MF327005_p93 ribonucleoside triphosphate reductase, small subunit phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism 1 65389 66462
AUV56297.1 MF327005_p80 hypothetical protein phrog_4469 unknown function unknown function 1 56055 56255
AUV56256.1 MF327005_p39 hypothetical protein phrog_222 tail completion or Neck1 protein connector 1 26587 27021
AUV56320.1 MF327005_p103 hypothetical protein phrog_4726 unknown function unknown function 1 71832 72110
AUV56300.1 MF327005_p83 hypothetical protein phrog_4424 unknown function unknown function 1 58489 58626
AUV56219.1 MF327005_p2 hypothetical protein phrog_4559 unknown function unknown function 1 330 581
AUV56272.1 MF327005_p55 tail fiber protein phrog_2097 tail fiber protein tail 1 38566 39741
AUV56238.1 MF327005_p21 hypothetical protein phrog_5064 unknown function unknown function -1 10383 10616
AUV56287.1 MF327005_p70 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism -1 48782 49882
AUV56280.1 MF327005_p63 hypothetical protein phrog_9143 unknown function unknown function -1 45086 45589
AUV56267.1 MF327005_p50 baseplate assembly protein phrog_11 baseplate spike tail 1 34878 35519
AUV56231.1 MF327005_p14 hypothetical protein phrog_4385 unknown function unknown function -1 6922 7215
AUV56304.1 MF327005_p87 hypothetical protein phrog_4442 unknown function unknown function 1 61170 61385
AUV56243.1 MF327005_p26 hypothetical protein phrog_10765 unknown function unknown function 1 16648 16860
AUV56283.1 MF327005_p66 hypothetical protein phrog_4473 unknown function unknown function -1 46227 46430
AUV56246.1 MF327005_p29 hypothetical protein phrog_4397 unknown function unknown function 1 18707 18913
AUV56222.1 MF327005_p5 hypothetical protein phrog_9967 unknown function unknown function -1 3396 3692
AUV56250.1 MF327005_p33 hypothetical protein phrog_240 head protein head and packaging 1 22515 22790
AUV56234.1 MF327005_p17 lysin phrog_7 endolysin lysis -1 8039 8503
AUV56249.1 MF327005_p32 hypothetical protein phrog_3977 unknown function unknown function 1 22015 22515
AUV56325.1 MF327005_p108 rIIB protein phrog_609 RIIB lysis inhibitor lysis 1 77929 79059
AUV56341.1 MF327005_p124 hypothetical protein phrog_4401 unknown function unknown function 1 85635 85931
AUV56344.1 MF327005_p127 hypothetical protein phrog_4327 unknown function unknown function 1 86693 87100
AUV56321.1 MF327005_p104 ribose-phosphate pyrophosphokinase phrog_619 ribose-phosphate pyrophosphokinase other 1 72121 73002
AUV56241.1 MF327005_p24 hypothetical protein singleton unknown function unknown function 1 13327 13455
AUV56331.1 MF327005_p114 hypothetical protein phrog_4391 unknown function unknown function 1 81418 81687
AUV56307.1 MF327005_p90 hypothetical protein phrog_3358 unknown function unknown function 1 62440 62775
AUV56309.1 MF327005_p92 hypothetical protein phrog_2652 unknown function unknown function 1 65117 65392
AUV56285.1 MF327005_p68 hypothetical protein phrog_5926 unknown function unknown function -1 47171 47611
AUV56259.1 MF327005_p42 structural protein phrog_205 tail sheath tail 1 27994 29346
AUV56254.1 MF327005_p37 major capsid protein phrog_29 major head protein head and packaging 1 24964 26067
AUV56290.1 MF327005_p73 hypothetical protein phrog_9065 unknown function unknown function -1 50343 50594
AUV56245.1 MF327005_p28 hypothetical protein phrog_2114 unknown function unknown function 1 17577 18311
AUV56263.1 MF327005_p46 tail length tape measure protein phrog_4036 tail length tape measure protein tail 1 30520 32757
AUV56346.1 MF327005_p129 hypothetical protein phrog_3303 unknown function unknown function 1 87519 88076
AUV56328.1 MF327005_p111 hypothetical protein phrog_2267 unknown function unknown function 1 80394 80858
AUV56261.1 MF327005_p44 tape measure chaperone phrog_1613 tail assembly chaperone tail 1 29883 30284
AUV56338.1 MF327005_p121 hypothetical protein phrog_4495 unknown function unknown function 1 84217 84597
AUV56228.1 MF327005_p11 hypothetical protein phrog_5380 unknown function unknown function -1 5179 5919
AUV56339.1 MF327005_p122 hypothetical protein phrog_5089 unknown function unknown function 1 84689 84946
AUV56343.1 MF327005_p126 hypothetical protein phrog_3436 unknown function unknown function 1 86331 86603
AUV56293.1 MF327005_p76 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 51076 53775
AUV56230.1 MF327005_p13 hypothetical protein phrog_4040 unknown function unknown function -1 6585 6929
AUV56268.1 MF327005_p51 hypothetical protein phrog_120 baseplate wedge subunit tail 1 35519 35935
AUV56270.1 MF327005_p53 hypothetical protein phrog_4017 baseplate protein tail 1 37407 38264
AUV56292.1 MF327005_p75 hypothetical protein phrog_4230 unknown function unknown function -1 50797 51015
AUV56277.1 MF327005_p60 dihydrofolate reductase phrog_316 dihydrofolate reductase DNA, RNA and nucleotide metabolism -1 43758 44303
AUV56302.1 MF327005_p85 exodeoxyribonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 59638 60678
AUV56221.1 MF327005_p4 hypothetical protein phrog_4713 unknown function unknown function -1 2933 3409
AUV56326.1 MF327005_p109 lysin phrog_600 unknown function unknown function 1 79161 79709
AUV56315.1 MF327005_p98 anaerobic NTP reductase-activating protein phrog_626 anaerobic ribonucleotide reductase small subunit DNA, RNA and nucleotide metabolism 1 69907 70392
AUV56252.1 MF327005_p35 head maturation protease phrog_53 head maturation protease head and packaging 1 23196 24542
AUV56329.1 MF327005_p112 i-spanin phrog_1152 Rz-like spanin lysis 1 80911 81258
AUV56324.1 MF327005_p107 hypothetical protein phrog_3931 unknown function unknown function 1 75235 75414
AUV56311.1 MF327005_p94 glutaredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 66462 66704
AUV56327.1 MF327005_p110 polynucleotide kinase phrog_3970 polynucleotide kinase other 1 79687 80382
AUV56288.1 MF327005_p71 hypothetical protein phrog_4427 unknown function unknown function -1 49879 50085
AUV56281.1 MF327005_p64 hypothetical protein phrog_4116 unknown function unknown function -1 45574 45933
AUV56299.1 MF327005_p82 hypothetical protein phrog_4982 unknown function unknown function 1 58214 58492
AUV56349.1 MF327005_p132 hypothetical protein phrog_13570 unknown function unknown function 1 88762 88959
AUV56296.1 MF327005_p79 deoxynucleotide monophosphate kinase phrog_139 deoxynucleoside monophosphate kinase other 1 55311 56051
AUV56295.1 MF327005_p78 hypothetical protein phrog_4251 minor tail protein tail 1 54459 55253
AUV56291.1 MF327005_p74 hypothetical protein phrog_5180 unknown function unknown function -1 50591 50800
AUV56336.1 MF327005_p119 hypothetical protein phrog_5293 unknown function unknown function 1 83752 83958
AUV56334.1 MF327005_p117 hypothetical protein phrog_2210 unknown function unknown function 1 82251 82451
AUV56232.1 MF327005_p15 hypothetical protein phrog_4348 unknown function unknown function -1 7217 7597
AUV56313.1 MF327005_p96 anaerobic NTP reductase phrog_487 NrdD-like anaerobic ribonucleotide reductase large subunit moron, auxiliary metabolic gene and host takeover 1 66947 69091
AUV56301.1 MF327005_p84 hypothetical protein phrog_3877 unknown function unknown function 1 58712 59575
AUV56352.1 MF327005_p135 hypothetical protein phrog_4725 unknown function unknown function 1 89788 90315
AUV56266.1 MF327005_p49 hypothetical protein phrog_196 baseplate hub tail 1 33904 34881
AUV56262.1 MF327005_p45 tape measure chaperone phrog_4963 tail assembly chaperone tail 1 30293 30520
AUV56305.1 MF327005_p88 phosphoribosyl-ATP pyrophosphohydrolase-like protein phrog_2144 MazG-like pyrophosphatase other 1 61385 62140
AUV56332.1 MF327005_p115 hypothetical protein phrog_4453 unknown function unknown function 1 81697 82023
AUV56303.1 MF327005_p86 GIY-YIG homing endonuclease phrog_447 NAD synthetase other 1 60668 61168
AUV56279.1 MF327005_p62 hypothetical protein phrog_4422 unknown function unknown function -1 44569 45084
AUV56284.1 MF327005_p67 hypothetical protein phrog_4332 unknown function unknown function -1 46433 46813
AUV56236.1 MF327005_p19 hypothetical protein phrog_4463 unknown function unknown function -1 9387 9755
AUV56223.1 MF327005_p6 hypothetical protein phrog_7193 unknown function unknown function -1 3695 4138
AUV56317.1 MF327005_p100 hypothetical protein phrog_4425 unknown function unknown function 1 70691 70948
AUV56251.1 MF327005_p34 hypothetical protein phrog_240 head protein head and packaging 1 22852 23184
AUV56312.1 MF327005_p95 hypothetical protein phrog_4532 unknown function unknown function 1 66697 66897
AUV56274.1 MF327005_p57 hypothetical protein phrog_402 unknown function unknown function 1 42252 42446
AUV56345.1 MF327005_p128 hypothetical protein phrog_9030 unknown function unknown function 1 87186 87434
AUV56351.1 MF327005_p134 hypothetical protein phrog_7482 unknown function unknown function 1 89583 89723
AUV56237.1 MF327005_p20 hypothetical protein phrog_4034 unknown function unknown function -1 9799 10389
AUV56248.1 MF327005_p31 hypothetical protein phrog_113 portal protein head and packaging 1 20549 22015
AUV56330.1 MF327005_p113 o-spanin phrog_4180 unknown function unknown function 1 81224 81421
AUV56294.1 MF327005_p77 hypothetical protein phrog_4039 unknown function unknown function 1 54035 54475
AUV56298.1 MF327005_p81 DNA primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 56248 58239
AUV56347.1 MF327005_p130 hypothetical protein phrog_4640 unknown function unknown function 1 88140 88370
AUV56225.1 MF327005_p8 hypothetical protein phrog_6279 unknown function unknown function -1 4387 4479
AUV56273.1 MF327005_p56 tail fiber protein phrog_4277 tail fiber protein tail 1 39787 42165
AUV56218.1 MF327005_p1 hypothetical protein phrog_7022 unknown function unknown function 1 1 264
AUV56348.1 MF327005_p131 hypothetical protein phrog_10118 unknown function unknown function 1 88371 88670
AUV56322.1 MF327005_p105 nicotinamide phosphoribosyltransferase phrog_448 nicotinamide phosphoribosyl transferase other 1 73047 74864
AUV56233.1 MF327005_p16 hypothetical protein phrog_4266 unknown function unknown function -1 7590 8000
AUV56276.1 MF327005_p59 dTMP thymidylate synthase phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism -1 42857 43756
AUV56278.1 MF327005_p61 hypothetical protein phrog_2993 unknown function unknown function -1 44300 44572
AUV56240.1 MF327005_p23 hypothetical protein phrog_850 RNA-binding protein DNA, RNA and nucleotide metabolism 1 11455 12870
AUV56286.1 MF327005_p69 hypothetical protein phrog_4652 unknown function unknown function -1 47614 48201
AUV56264.1 MF327005_p47 hypothetical protein phrog_3721 unknown function unknown function 1 32757 33563
AUV56306.1 MF327005_p89 hypothetical protein phrog_4007 unknown function unknown function 1 62121 62447
AUV56318.1 MF327005_p101 endonuclease phrog_4462 unknown function unknown function 1 70960 71271
AUV56227.1 MF327005_p10 hypothetical protein phrog_4459 unknown function unknown function -1 4964 5182
AUV56316.1 MF327005_p99 hypothetical protein phrog_5082 unknown function unknown function 1 70418 70675
AUV56350.1 MF327005_p133 hypothetical protein phrog_4318 unknown function unknown function 1 89045 89386
AUV56255.1 MF327005_p38 hypothetical protein phrog_1732 unknown function unknown function 1 26090 26539
AUV56226.1 MF327005_p9 hypothetical protein phrog_4343 unknown function unknown function -1 4461 4967
AUV56340.1 MF327005_p123 hypothetical protein phrog_4190 unknown function unknown function 1 85038 85550
AUV56220.1 MF327005_p3 hypothetical protein phrog_4330 unknown function unknown function -1 2259 2936
AUV56319.1 MF327005_p102 hypothetical protein phrog_3500 unknown function unknown function 1 71324 71839
AUV56224.1 MF327005_p7 hypothetical protein phrog_4457 unknown function unknown function -1 4181 4390