| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF327005 |
Definition |
Shigella phage Sf19, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Ounavirinae; Mooglevirus; unclassified Mooglevirus. |
DB of origin |
NUCCORE |
Length |
90375 |
Host Name |
Shigella flexneri |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
135 |
%GC |
39.02 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AUV56342.1 | MF327005_p125 | hypothetical protein | phrog_4375 | unknown function | unknown function | 1 | 85925 | 86272 |
| AUV56289.1 | MF327005_p72 | hypothetical protein | phrog_902 | unknown function | unknown function | -1 | 50087 | 50332 |
| AUV56265.1 | MF327005_p48 | hypothetical protein | phrog_349 | virion structural protein | head and packaging | 1 | 33563 | 33904 |
| AUV56282.1 | MF327005_p65 | transcriptional regulator | phrog_1373 | transcriptional regulator | transcription regulation | -1 | 45935 | 46234 |
| AUV56275.1 | MF327005_p58 | holin | phrog_4038 | unknown function | unknown function | 1 | 42446 | 42820 |
| AUV56244.1 | MF327005_p27 | hypothetical protein | phrog_14202 | unknown function | unknown function | 1 | 16905 | 17132 |
| AUV56335.1 | MF327005_p118 | hypothetical protein | phrog_335 | phosphatase | other | 1 | 82453 | 83247 |
| AUV56333.1 | MF327005_p116 | hypothetical protein | phrog_6082 | unknown function | unknown function | 1 | 81998 | 82258 |
| AUV56314.1 | MF327005_p97 | hypothetical protein | phrog_4382 | unknown function | unknown function | 1 | 69539 | 69907 |
| AUV56242.1 | MF327005_p25 | hypothetical protein | phrog_2255 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 15216 | 15620 |
| AUV56239.1 | MF327005_p22 | hypothetical protein | phrog_4114 | unknown function | unknown function | 1 | 11007 | 11378 |
| AUV56258.1 | MF327005_p41 | hypothetical protein | phrog_4082 | unknown function | unknown function | 1 | 27394 | 27993 |
| AUV56247.1 | MF327005_p30 | terminase large subunit | phrog_979 | terminase large subunit | head and packaging | 1 | 18935 | 20536 |
| AUV56253.1 | MF327005_p36 | hypothetical protein | phrog_4146 | tail protease | other | 1 | 24555 | 24932 |
| AUV56323.1 | MF327005_p106 | hypothetical protein | phrog_4262 | unknown function | unknown function | 1 | 74918 | 75253 |
| AUV56229.1 | MF327005_p12 | hypothetical protein | phrog_4109 | unknown function | unknown function | -1 | 5990 | 6583 |
| AUV56235.1 | MF327005_p18 | tail protein | phrog_3995 | tail protein | tail | -1 | 8506 | 9390 |
| AUV56260.1 | MF327005_p43 | hypothetical protein | phrog_280 | virion structural protein | head and packaging | 1 | 29360 | 29806 |
| AUV56308.1 | MF327005_p91 | ribonucleoside triphosphate reductase, large subunit | phrog_84 | ribonucleoside-diphosphate reductase large subunit | DNA, RNA and nucleotide metabolism | 1 | 62827 | 65061 |
| AUV56271.1 | MF327005_p54 | hypothetical protein | phrog_4141 | unknown function | unknown function | 1 | 38264 | 38563 |
| AUV56257.1 | MF327005_p40 | hypothetical protein | phrog_2874 | unknown function | unknown function | 1 | 27018 | 27419 |
| AUV56337.1 | MF327005_p120 | hypothetical protein | phrog_14219 | unknown function | unknown function | 1 | 83971 | 84132 |
| AUV56269.1 | MF327005_p52 | baseplate assembly protein | phrog_6 | baseplate wedge subunit | tail | 1 | 35935 | 37404 |
| AUV56310.1 | MF327005_p93 | ribonucleoside triphosphate reductase, small subunit | phrog_86 | ribonucleoside diphosphate reductase small subunit | DNA, RNA and nucleotide metabolism | 1 | 65389 | 66462 |
| AUV56297.1 | MF327005_p80 | hypothetical protein | phrog_4469 | unknown function | unknown function | 1 | 56055 | 56255 |
| AUV56256.1 | MF327005_p39 | hypothetical protein | phrog_222 | tail completion or Neck1 protein | connector | 1 | 26587 | 27021 |
| AUV56320.1 | MF327005_p103 | hypothetical protein | phrog_4726 | unknown function | unknown function | 1 | 71832 | 72110 |
| AUV56300.1 | MF327005_p83 | hypothetical protein | phrog_4424 | unknown function | unknown function | 1 | 58489 | 58626 |
| AUV56219.1 | MF327005_p2 | hypothetical protein | phrog_4559 | unknown function | unknown function | 1 | 330 | 581 |
| AUV56272.1 | MF327005_p55 | tail fiber protein | phrog_2097 | tail fiber protein | tail | 1 | 38566 | 39741 |
| AUV56238.1 | MF327005_p21 | hypothetical protein | phrog_5064 | unknown function | unknown function | -1 | 10383 | 10616 |
| AUV56287.1 | MF327005_p70 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | -1 | 48782 | 49882 |
| AUV56280.1 | MF327005_p63 | hypothetical protein | phrog_9143 | unknown function | unknown function | -1 | 45086 | 45589 |
| AUV56267.1 | MF327005_p50 | baseplate assembly protein | phrog_11 | baseplate spike | tail | 1 | 34878 | 35519 |
| AUV56231.1 | MF327005_p14 | hypothetical protein | phrog_4385 | unknown function | unknown function | -1 | 6922 | 7215 |
| AUV56304.1 | MF327005_p87 | hypothetical protein | phrog_4442 | unknown function | unknown function | 1 | 61170 | 61385 |
| AUV56243.1 | MF327005_p26 | hypothetical protein | phrog_10765 | unknown function | unknown function | 1 | 16648 | 16860 |
| AUV56283.1 | MF327005_p66 | hypothetical protein | phrog_4473 | unknown function | unknown function | -1 | 46227 | 46430 |
| AUV56246.1 | MF327005_p29 | hypothetical protein | phrog_4397 | unknown function | unknown function | 1 | 18707 | 18913 |
| AUV56222.1 | MF327005_p5 | hypothetical protein | phrog_9967 | unknown function | unknown function | -1 | 3396 | 3692 |
| AUV56250.1 | MF327005_p33 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 22515 | 22790 |
| AUV56234.1 | MF327005_p17 | lysin | phrog_7 | endolysin | lysis | -1 | 8039 | 8503 |
| AUV56249.1 | MF327005_p32 | hypothetical protein | phrog_3977 | unknown function | unknown function | 1 | 22015 | 22515 |
| AUV56325.1 | MF327005_p108 | rIIB protein | phrog_609 | RIIB lysis inhibitor | lysis | 1 | 77929 | 79059 |
| AUV56341.1 | MF327005_p124 | hypothetical protein | phrog_4401 | unknown function | unknown function | 1 | 85635 | 85931 |
| AUV56344.1 | MF327005_p127 | hypothetical protein | phrog_4327 | unknown function | unknown function | 1 | 86693 | 87100 |
| AUV56321.1 | MF327005_p104 | ribose-phosphate pyrophosphokinase | phrog_619 | ribose-phosphate pyrophosphokinase | other | 1 | 72121 | 73002 |
| AUV56241.1 | MF327005_p24 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13327 | 13455 |
| AUV56331.1 | MF327005_p114 | hypothetical protein | phrog_4391 | unknown function | unknown function | 1 | 81418 | 81687 |
| AUV56307.1 | MF327005_p90 | hypothetical protein | phrog_3358 | unknown function | unknown function | 1 | 62440 | 62775 |
| AUV56309.1 | MF327005_p92 | hypothetical protein | phrog_2652 | unknown function | unknown function | 1 | 65117 | 65392 |
| AUV56285.1 | MF327005_p68 | hypothetical protein | phrog_5926 | unknown function | unknown function | -1 | 47171 | 47611 |
| AUV56259.1 | MF327005_p42 | structural protein | phrog_205 | tail sheath | tail | 1 | 27994 | 29346 |
| AUV56254.1 | MF327005_p37 | major capsid protein | phrog_29 | major head protein | head and packaging | 1 | 24964 | 26067 |
| AUV56290.1 | MF327005_p73 | hypothetical protein | phrog_9065 | unknown function | unknown function | -1 | 50343 | 50594 |
| AUV56245.1 | MF327005_p28 | hypothetical protein | phrog_2114 | unknown function | unknown function | 1 | 17577 | 18311 |
| AUV56263.1 | MF327005_p46 | tail length tape measure protein | phrog_4036 | tail length tape measure protein | tail | 1 | 30520 | 32757 |
| AUV56346.1 | MF327005_p129 | hypothetical protein | phrog_3303 | unknown function | unknown function | 1 | 87519 | 88076 |
| AUV56328.1 | MF327005_p111 | hypothetical protein | phrog_2267 | unknown function | unknown function | 1 | 80394 | 80858 |
| AUV56261.1 | MF327005_p44 | tape measure chaperone | phrog_1613 | tail assembly chaperone | tail | 1 | 29883 | 30284 |
| AUV56338.1 | MF327005_p121 | hypothetical protein | phrog_4495 | unknown function | unknown function | 1 | 84217 | 84597 |
| AUV56228.1 | MF327005_p11 | hypothetical protein | phrog_5380 | unknown function | unknown function | -1 | 5179 | 5919 |
| AUV56339.1 | MF327005_p122 | hypothetical protein | phrog_5089 | unknown function | unknown function | 1 | 84689 | 84946 |
| AUV56343.1 | MF327005_p126 | hypothetical protein | phrog_3436 | unknown function | unknown function | 1 | 86331 | 86603 |
| AUV56293.1 | MF327005_p76 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 51076 | 53775 |
| AUV56230.1 | MF327005_p13 | hypothetical protein | phrog_4040 | unknown function | unknown function | -1 | 6585 | 6929 |
| AUV56268.1 | MF327005_p51 | hypothetical protein | phrog_120 | baseplate wedge subunit | tail | 1 | 35519 | 35935 |
| AUV56270.1 | MF327005_p53 | hypothetical protein | phrog_4017 | baseplate protein | tail | 1 | 37407 | 38264 |
| AUV56292.1 | MF327005_p75 | hypothetical protein | phrog_4230 | unknown function | unknown function | -1 | 50797 | 51015 |
| AUV56277.1 | MF327005_p60 | dihydrofolate reductase | phrog_316 | dihydrofolate reductase | DNA, RNA and nucleotide metabolism | -1 | 43758 | 44303 |
| AUV56302.1 | MF327005_p85 | exodeoxyribonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 59638 | 60678 |
| AUV56221.1 | MF327005_p4 | hypothetical protein | phrog_4713 | unknown function | unknown function | -1 | 2933 | 3409 |
| AUV56326.1 | MF327005_p109 | lysin | phrog_600 | unknown function | unknown function | 1 | 79161 | 79709 |
| AUV56315.1 | MF327005_p98 | anaerobic NTP reductase-activating protein | phrog_626 | anaerobic ribonucleotide reductase small subunit | DNA, RNA and nucleotide metabolism | 1 | 69907 | 70392 |
| AUV56252.1 | MF327005_p35 | head maturation protease | phrog_53 | head maturation protease | head and packaging | 1 | 23196 | 24542 |
| AUV56329.1 | MF327005_p112 | i-spanin | phrog_1152 | Rz-like spanin | lysis | 1 | 80911 | 81258 |
| AUV56324.1 | MF327005_p107 | hypothetical protein | phrog_3931 | unknown function | unknown function | 1 | 75235 | 75414 |
| AUV56311.1 | MF327005_p94 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 66462 | 66704 |
| AUV56327.1 | MF327005_p110 | polynucleotide kinase | phrog_3970 | polynucleotide kinase | other | 1 | 79687 | 80382 |
| AUV56288.1 | MF327005_p71 | hypothetical protein | phrog_4427 | unknown function | unknown function | -1 | 49879 | 50085 |
| AUV56281.1 | MF327005_p64 | hypothetical protein | phrog_4116 | unknown function | unknown function | -1 | 45574 | 45933 |
| AUV56299.1 | MF327005_p82 | hypothetical protein | phrog_4982 | unknown function | unknown function | 1 | 58214 | 58492 |
| AUV56349.1 | MF327005_p132 | hypothetical protein | phrog_13570 | unknown function | unknown function | 1 | 88762 | 88959 |
| AUV56296.1 | MF327005_p79 | deoxynucleotide monophosphate kinase | phrog_139 | deoxynucleoside monophosphate kinase | other | 1 | 55311 | 56051 |
| AUV56295.1 | MF327005_p78 | hypothetical protein | phrog_4251 | minor tail protein | tail | 1 | 54459 | 55253 |
| AUV56291.1 | MF327005_p74 | hypothetical protein | phrog_5180 | unknown function | unknown function | -1 | 50591 | 50800 |
| AUV56336.1 | MF327005_p119 | hypothetical protein | phrog_5293 | unknown function | unknown function | 1 | 83752 | 83958 |
| AUV56334.1 | MF327005_p117 | hypothetical protein | phrog_2210 | unknown function | unknown function | 1 | 82251 | 82451 |
| AUV56232.1 | MF327005_p15 | hypothetical protein | phrog_4348 | unknown function | unknown function | -1 | 7217 | 7597 |
| AUV56313.1 | MF327005_p96 | anaerobic NTP reductase | phrog_487 | NrdD-like anaerobic ribonucleotide reductase large subunit | moron, auxiliary metabolic gene and host takeover | 1 | 66947 | 69091 |
| AUV56301.1 | MF327005_p84 | hypothetical protein | phrog_3877 | unknown function | unknown function | 1 | 58712 | 59575 |
| AUV56352.1 | MF327005_p135 | hypothetical protein | phrog_4725 | unknown function | unknown function | 1 | 89788 | 90315 |
| AUV56266.1 | MF327005_p49 | hypothetical protein | phrog_196 | baseplate hub | tail | 1 | 33904 | 34881 |
| AUV56262.1 | MF327005_p45 | tape measure chaperone | phrog_4963 | tail assembly chaperone | tail | 1 | 30293 | 30520 |
| AUV56305.1 | MF327005_p88 | phosphoribosyl-ATP pyrophosphohydrolase-like protein | phrog_2144 | MazG-like pyrophosphatase | other | 1 | 61385 | 62140 |
| AUV56332.1 | MF327005_p115 | hypothetical protein | phrog_4453 | unknown function | unknown function | 1 | 81697 | 82023 |
| AUV56303.1 | MF327005_p86 | GIY-YIG homing endonuclease | phrog_447 | NAD synthetase | other | 1 | 60668 | 61168 |
| AUV56279.1 | MF327005_p62 | hypothetical protein | phrog_4422 | unknown function | unknown function | -1 | 44569 | 45084 |
| AUV56284.1 | MF327005_p67 | hypothetical protein | phrog_4332 | unknown function | unknown function | -1 | 46433 | 46813 |
| AUV56236.1 | MF327005_p19 | hypothetical protein | phrog_4463 | unknown function | unknown function | -1 | 9387 | 9755 |
| AUV56223.1 | MF327005_p6 | hypothetical protein | phrog_7193 | unknown function | unknown function | -1 | 3695 | 4138 |
| AUV56317.1 | MF327005_p100 | hypothetical protein | phrog_4425 | unknown function | unknown function | 1 | 70691 | 70948 |
| AUV56251.1 | MF327005_p34 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 22852 | 23184 |
| AUV56312.1 | MF327005_p95 | hypothetical protein | phrog_4532 | unknown function | unknown function | 1 | 66697 | 66897 |
| AUV56274.1 | MF327005_p57 | hypothetical protein | phrog_402 | unknown function | unknown function | 1 | 42252 | 42446 |
| AUV56345.1 | MF327005_p128 | hypothetical protein | phrog_9030 | unknown function | unknown function | 1 | 87186 | 87434 |
| AUV56351.1 | MF327005_p134 | hypothetical protein | phrog_7482 | unknown function | unknown function | 1 | 89583 | 89723 |
| AUV56237.1 | MF327005_p20 | hypothetical protein | phrog_4034 | unknown function | unknown function | -1 | 9799 | 10389 |
| AUV56248.1 | MF327005_p31 | hypothetical protein | phrog_113 | portal protein | head and packaging | 1 | 20549 | 22015 |
| AUV56330.1 | MF327005_p113 | o-spanin | phrog_4180 | unknown function | unknown function | 1 | 81224 | 81421 |
| AUV56294.1 | MF327005_p77 | hypothetical protein | phrog_4039 | unknown function | unknown function | 1 | 54035 | 54475 |
| AUV56298.1 | MF327005_p81 | DNA primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 56248 | 58239 |
| AUV56347.1 | MF327005_p130 | hypothetical protein | phrog_4640 | unknown function | unknown function | 1 | 88140 | 88370 |
| AUV56225.1 | MF327005_p8 | hypothetical protein | phrog_6279 | unknown function | unknown function | -1 | 4387 | 4479 |
| AUV56273.1 | MF327005_p56 | tail fiber protein | phrog_4277 | tail fiber protein | tail | 1 | 39787 | 42165 |
| AUV56218.1 | MF327005_p1 | hypothetical protein | phrog_7022 | unknown function | unknown function | 1 | 1 | 264 |
| AUV56348.1 | MF327005_p131 | hypothetical protein | phrog_10118 | unknown function | unknown function | 1 | 88371 | 88670 |
| AUV56322.1 | MF327005_p105 | nicotinamide phosphoribosyltransferase | phrog_448 | nicotinamide phosphoribosyl transferase | other | 1 | 73047 | 74864 |
| AUV56233.1 | MF327005_p16 | hypothetical protein | phrog_4266 | unknown function | unknown function | -1 | 7590 | 8000 |
| AUV56276.1 | MF327005_p59 | dTMP thymidylate synthase | phrog_160 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 42857 | 43756 |
| AUV56278.1 | MF327005_p61 | hypothetical protein | phrog_2993 | unknown function | unknown function | -1 | 44300 | 44572 |
| AUV56240.1 | MF327005_p23 | hypothetical protein | phrog_850 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 11455 | 12870 |
| AUV56286.1 | MF327005_p69 | hypothetical protein | phrog_4652 | unknown function | unknown function | -1 | 47614 | 48201 |
| AUV56264.1 | MF327005_p47 | hypothetical protein | phrog_3721 | unknown function | unknown function | 1 | 32757 | 33563 |
| AUV56306.1 | MF327005_p89 | hypothetical protein | phrog_4007 | unknown function | unknown function | 1 | 62121 | 62447 |
| AUV56318.1 | MF327005_p101 | endonuclease | phrog_4462 | unknown function | unknown function | 1 | 70960 | 71271 |
| AUV56227.1 | MF327005_p10 | hypothetical protein | phrog_4459 | unknown function | unknown function | -1 | 4964 | 5182 |
| AUV56316.1 | MF327005_p99 | hypothetical protein | phrog_5082 | unknown function | unknown function | 1 | 70418 | 70675 |
| AUV56350.1 | MF327005_p133 | hypothetical protein | phrog_4318 | unknown function | unknown function | 1 | 89045 | 89386 |
| AUV56255.1 | MF327005_p38 | hypothetical protein | phrog_1732 | unknown function | unknown function | 1 | 26090 | 26539 |
| AUV56226.1 | MF327005_p9 | hypothetical protein | phrog_4343 | unknown function | unknown function | -1 | 4461 | 4967 |
| AUV56340.1 | MF327005_p123 | hypothetical protein | phrog_4190 | unknown function | unknown function | 1 | 85038 | 85550 |
| AUV56220.1 | MF327005_p3 | hypothetical protein | phrog_4330 | unknown function | unknown function | -1 | 2259 | 2936 |
| AUV56319.1 | MF327005_p102 | hypothetical protein | phrog_3500 | unknown function | unknown function | 1 | 71324 | 71839 |
| AUV56224.1 | MF327005_p7 | hypothetical protein | phrog_4457 | unknown function | unknown function | -1 | 4181 | 4390 |