Genomic map of Escherichia phage D6 (MF356679)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MF356679
Definition
Escherichia phage D6, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; unclassified Myoviridae.
DB of origin
NUCCORE
Length
91159
Host Name
Escherichia coli
Host domain
Bacteria
Is prophage?
undef
Number of proteins
118
%GC
47.01
Number of singletons
5
Number of paralogs
4

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ASR76344.1 MF356679_p41 morphogenetic function protein phrog_1854 PmgB-like head morphogenesis head and packaging -1 44631 45452
ASR76338.1 MF356679_p35 long tail fiber protein phrog_454 tail fiber protein tail -1 34808 37627
ASR76421.1 MF356679_p59 StbB type plasmid stability protein phrog_8671 partition protein DNA, RNA and nucleotide metabolism 1 58109 58447
ASR76347.1 MF356679_p44 morphogenetic function protein phrog_1851 PmgC-like head morphogenesis head and packaging -1 47701 48252
ASR76388.1 MF356679_p50 hypothetical protein singleton unknown function unknown function -1 52273 52377
ASR76413.1 MF356679_p114 hypothetical protein phrog_872 unknown function unknown function -1 88126 88566
ASR76353.1 MF356679_p60 hypothetical protein phrog_164 ParA-like partition protein DNA, RNA and nucleotide metabolism 1 58735 59376
ASR76423.1 MF356679_p67 tail tape measure protein phrog_1390 tail protein tail -1 64812 65792
ASR76424.1 MF356679_p80 hypothetical protein phrog_4915 unknown function unknown function -1 73182 73532
ASR76325.1 MF356679_p15 defense against restriction phrog_1685 unknown function unknown function -1 12283 19119
ASR76339.1 MF356679_p36 tail fiber assembly protein phrog_2032 tail fiber assembly protein tail -1 37630 38076
ASR76318.1 MF356679_p2 terminase phrog_2 terminase large subunit head and packaging -1 1292 2800
ASR76367.1 MF356679_p82 anti-repressor phrog_63 anti-repressor Ant transcription regulation -1 74022 74963
ASR76342.1 MF356679_p39 morphogenetic protein phrog_1896 unknown function unknown function -1 40454 40828
ASR76368.1 MF356679_p83 inhibition of cell division phrog_1426 unknown function unknown function -1 74963 75178
ASR76361.1 MF356679_p71 HigA family addiction module anti-toxin phrog_1381 plasmid antitoxin with HTH domain moron, auxiliary metabolic gene and host takeover 1 67887 68225
ASR76358.1 MF356679_p68 hypothetical protein phrog_1767 baseplate protein tail -1 65796 66563
ASR76375.1 MF356679_p115 deoxyuridine 5'-triphosphate nucleotidohydrolase phrog_135 dUTPase DNA, RNA and nucleotide metabolism -1 88581 89075
ASR76397.1 MF356679_p76 hypothetical protein singleton unknown function unknown function 1 71018 71101
ASR76404.1 MF356679_p93 hypothetical protein phrog_6797 unknown function unknown function 1 78777 79097
ASR76334.1 MF356679_p30 holin phrog_1527 holin lysis -1 31152 31478
ASR76394.1 MF356679_p61 hypothetical protein phrog_9169 unknown function unknown function 1 59369 59656
ASR76369.1 MF356679_p87 RecA-dependent endonuclease phrog_2321 Ref-like RecA filament endonuclease DNA, RNA and nucleotide metabolism -1 75990 76568
ASR76351.1 MF356679_p51 major capsid protein phrog_1014 unknown function unknown function -1 52377 54074
ASR76372.1 MF356679_p107 DNA polymerase III theta subunit-like protein phrog_27764 DNA polymerase III theta subunit DNA, RNA and nucleotide metabolism 1 85294 85440
ASR76336.1 MF356679_p33 tail fiber assembly protein phrog_136 tail fiber assembly protein tail 1 33715 34248
ASR76330.1 MF356679_p26 defense against restriction phrog_1855 DdrA-like anti-restriction protein moron, auxiliary metabolic gene and host takeover -1 27792 28166
ASR76384.1 MF356679_p23 hypothetical protein phrog_13843 unknown function unknown function -1 25273 25605
ASR76322.1 MF356679_p1 prophage repressor phrog_1678 unknown function unknown function 1 227 1264
ASR76363.1 MF356679_p74 tail protein phrog_1722 tail protein tail -1 69466 70659
ASR76370.1 MF356679_p97 serine/threonine protein phosphatase phrog_246 NinI-like serine-threonine phosphatase other 1 79990 80682
ASR76381.1 MF356679_p17 hypothetical protein phrog_7385 unknown function unknown function -1 19789 19986
ASR76390.1 MF356679_p54 hypothetical protein phrog_17138 unknown function unknown function -1 55088 55309
ASR76362.1 MF356679_p72 HigA family addiction module anti-toxin phrog_1373 transcriptional regulator transcription regulation 1 68282 68641
ASR76406.1 MF356679_p96 hypothetical protein phrog_1372 unknown function unknown function 1 79682 79993
ASR76428.1 MF356679_p94 hypothetical protein phrog_667 unknown function unknown function 1 79189 79464
ASR76403.1 MF356679_p90 hypothetical protein phrog_323 transcriptional regulator, D5-like transcription regulation 1 77449 77766
ASR76415.1 MF356679_p117 hypothetical protein phrog_1968 unknown function unknown function -1 89545 89889
ASR76392.1 MF356679_p56 hypothetical protein phrog_1559 unknown function unknown function -1 55783 56589
ASR76412.1 MF356679_p113 hypothetical protein phrog_2326 unknown function unknown function -1 87343 88119
ASR76355.1 MF356679_p63 site-specific DNA-adenine methylase phrog_56 DNA methyltransferase other -1 61635 62540
ASR76366.1 MF356679_p81 morphogenetic function protein phrog_7349 unknown function unknown function -1 73678 73962
ASR76374.1 MF356679_p111 toxin of addiction system phrog_577 Doc-like toxin moron, auxiliary metabolic gene and host takeover 1 86728 87108
ASR76352.1 MF356679_p58 StbA type plasmid stability protein phrog_691 partition protein DNA, RNA and nucleotide metabolism 1 57140 58096
ASR76407.1 MF356679_p98 hypothetical protein phrog_96 HNH endonuclease DNA, RNA and nucleotide metabolism 1 80781 81776
ASR76429.1 MF356679_p99 hypothetical protein phrog_4030 unknown function unknown function 1 81790 82089
ASR76349.1 MF356679_p47 baseplate protein phrog_1053 unknown function unknown function -1 49447 50181
ASR76320.1 MF356679_p9 prohead scaffolding protein phrog_1660 PmgS-like head morphogenesis head and packaging -1 9085 10308
ASR76327.1 MF356679_p19 inhibition of cell division phrog_1426 unknown function unknown function -1 20693 20917
ASR76400.1 MF356679_p85 hypothetical protein phrog_7786 unknown function unknown function -1 75491 75658
ASR76350.1 MF356679_p48 tail sheath protein phrog_1036 tail sheath tail -1 50225 51883
ASR76433.1 MF356679_p106 hypothetical protein phrog_2594 unknown function unknown function -1 84911 85261
ASR76341.1 MF356679_p38 baseplate J wedge protein phrog_1369 baseplate protein tail -1 39027 40457
ASR76326.1 MF356679_p18 anti-repressor phrog_63 anti-repressor Ant transcription regulation -1 19986 20693
ASR76359.1 MF356679_p69 tail protein phrog_1906 tail protein tail -1 66560 67351
ASR76402.1 MF356679_p88 hypothetical protein phrog_8890 unknown function unknown function 1 76689 76841
ASR76387.1 MF356679_p49 hypothetical protein phrog_215 structural protein with Ig domain head and packaging -1 51951 52229
ASR76321.1 MF356679_p10 morphogenetic function protein phrog_9115 unknown function unknown function -1 10407 10706
ASR76377.1 MF356679_p5 hypothetical protein phrog_7004 unknown function unknown function -1 4662 5054
ASR76391.1 MF356679_p55 hypothetical protein phrog_214 Rz-like spanin lysis -1 55254 55706
ASR76426.1 MF356679_p91 hypothetical protein phrog_492 unknown function unknown function 1 77756 78112
ASR76333.1 MF356679_p29 holin antagonist phrog_1898 lysis determining protein lysis -1 30706 31152
ASR76385.1 MF356679_p24 hypothetical protein phrog_18019 unknown function unknown function -1 25650 26207
ASR76396.1 MF356679_p73 hypothetical protein phrog_8191 unknown function unknown function 1 68704 69432
ASR76399.1 MF356679_p84 hypothetical protein singleton unknown function unknown function 1 75234 75533
ASR76405.1 MF356679_p95 hypothetical protein phrog_4132 unknown function unknown function 1 79461 79685
ASR76354.1 MF356679_p62 glutaminyl-tRNA synthetase phrog_12136 unknown function unknown function 1 59925 61586
ASR76357.1 MF356679_p66 baseplate phrog_430 baseplate hub subunit and tail lysozyme tail -1 64162 64815
ASR76416.1 MF356679_p4 late gene transcriptional activator phrog_1704 Lpa-like transcriptional activator transcription regulation -1 4161 4553
ASR76408.1 MF356679_p100 hypothetical protein phrog_250 unknown function unknown function 1 82076 82723
ASR76378.1 MF356679_p6 hypothetical protein phrog_7362 unknown function unknown function -1 5054 5629
ASR76380.1 MF356679_p11 hypothetical protein phrog_7206 unknown function unknown function -1 10703 10903
ASR76360.1 MF356679_p70 RelE family mRNA endonuclease addiction module toxin phrog_3066 toxin of TA system moron, auxiliary metabolic gene and host takeover 1 67514 67816
ASR76431.1 MF356679_p102 hypothetical protein phrog_926 unknown function unknown function 1 82903 83118
ASR76379.1 MF356679_p7 hypothetical protein phrog_1470 TciB-like inhibition of cell division or resistance to colicin moron, auxiliary metabolic gene and host takeover -1 6279 6443
ASR76432.1 MF356679_p103 hypothetical protein phrog_8930 unknown function unknown function 1 83120 83575
ASR76419.1 MF356679_p46 morphogenetic function protein phrog_1114 PmgG-like head morphogenesis head and packaging -1 48807 49379
ASR76410.1 MF356679_p109 hypothetical protein phrog_7512 unknown function unknown function 1 85976 86398
ASR76328.1 MF356679_p21 head processing protease phrog_1801 tail fiber protein tail -1 22494 23492
ASR76337.1 MF356679_p34 tail fiber assembly protein phrog_136 tail fiber assembly protein tail -1 34277 34807
ASR76348.1 MF356679_p45 baseplate structural protein phrog_1120 tail tube protein tail -1 48307 48798
ASR76417.1 MF356679_p16 peptidoglycan hydrolase phrog_1259 baseplate hub subunit and tail lysozyme tail 1 19271 19756
ASR76356.1 MF356679_p65 recombination associated protein of RdgC family phrog_724 exonuclease recombination-associated DNA, RNA and nucleotide metabolism -1 63197 64102
ASR76430.1 MF356679_p101 hypothetical protein phrog_1380 unknown function unknown function 1 82710 82901
ASR76371.1 MF356679_p104 hypothetical protein phrog_60 unknown function unknown function 1 83586 84668
ASR76386.1 MF356679_p25 hypothetical protein phrog_5143 unknown function unknown function -1 26333 27697
ASR76345.1 MF356679_p42 hypothetical protein phrog_4402 replication initiation protein DNA, RNA and nucleotide metabolism 1 45841 46596
ASR76331.1 MF356679_p27 hypothetical protein phrog_1926 released from the phage upon host infection other -1 28166 30103
ASR76324.1 MF356679_p14 defense against restriction phrog_1629 Ulx-like anti-restriction moron, auxiliary metabolic gene and host takeover -1 11812 12246
ASR76393.1 MF356679_p57 hypothetical protein phrog_281 PAAR motif of membran proteins moron, auxiliary metabolic gene and host takeover -1 56589 56873
ASR76382.1 MF356679_p13 hypothetical protein phrog_6844 unknown function unknown function -1 11549 11809
ASR76418.1 MF356679_p31 DNA invertase phrog_125 DNA invertase DNA, RNA and nucleotide metabolism 1 31584 32144
ASR76401.1 MF356679_p86 hypothetical protein singleton unknown function unknown function -1 75655 75777
ASR76420.1 MF356679_p53 hypothetical protein phrog_8101 unknown function unknown function 1 54642 55100
ASR76346.1 MF356679_p43 major tail tube structural protein phrog_1842 tail tube protein tail -1 46978 47685
ASR76373.1 MF356679_p110 anti-toxin of addiction system phrog_375 Phd-like antitoxin moron, auxiliary metabolic gene and host takeover 1 86507 86728
ASR76365.1 MF356679_p79 superimmunity accessory function protein phrog_13054 unknown function unknown function 1 72246 73142
ASR76340.1 MF356679_p37 hypothetical protein phrog_2015 tail tube protein tail -1 38171 39016
ASR76409.1 MF356679_p105 hypothetical protein phrog_21843 unknown function unknown function 1 84652 84804
ASR76376.1 MF356679_p118 tyrosine recombinase phrog_1 integrase integration and excision -1 89963 90991
ASR76414.1 MF356679_p116 hypothetical protein phrog_6669 unknown function unknown function -1 89072 89548
ASR76329.1 MF356679_p22 portal protein phrog_1497 portal protein head and packaging -1 23506 25188
ASR76317.1 MF356679_p3 terminase phrog_1711 terminase head and packaging -1 2800 4164
ASR76427.1 MF356679_p92 hypothetical protein phrog_368 unknown function unknown function 1 78109 78777
ASR76389.1 MF356679_p52 hypothetical protein phrog_7830 unknown function unknown function 1 54233 54625
ASR76323.1 MF356679_p12 morphogenetic function protein singleton unknown function unknown function -1 10918 11412
ASR76343.1 MF356679_p40 tail injection transglycosylase phrog_7182 tail injection transglycosylase other -1 40834 44616
ASR76422.1 MF356679_p64 DNA-cytosine methylase phrog_757 DNA methyltransferase other -1 62533 63213
ASR76335.1 MF356679_p32 tail fiber protein phrog_454 tail fiber protein tail 1 32192 33712
ASR76383.1 MF356679_p20 lytic replication protein phrog_2418 unknown function unknown function -1 21331 22293
ASR76411.1 MF356679_p112 hypothetical protein phrog_3345 unknown function unknown function 1 87113 87310
ASR76425.1 MF356679_p89 hypothetical protein phrog_5781 unknown function unknown function 1 76841 77452
ASR76332.1 MF356679_p28 hypothetical protein phrog_1620 Hdf-like antirestriction moron, auxiliary metabolic gene and host takeover -1 30096 30716
ASR76319.1 MF356679_p8 hypothetical protein phrog_632 tellurite resistance moron, auxiliary metabolic gene and host takeover -1 6443 6877
ASR76395.1 MF356679_p75 baseplate phrog_1269 baseplate wedge subunit tail -1 70652 70981
ASR76364.1 MF356679_p78 maturation of virion phrog_1837 unknown function unknown function -1 71310 71963
ASR76398.1 MF356679_p77 hypothetical protein phrog_38362 unknown function unknown function 1 71175 71309
ASR76434.1 MF356679_p108 DNA polymerase V umuD-like protein phrog_811 UmuD-like protein DNA, RNA and nucleotide metabolism 1 85452 85841