| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF428478 |
Definition |
Staphylococcus phage SN13, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
NUCCORE |
Length |
40462 |
Host Name |
Staphylococcus pseudintermedius |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
71 |
%GC |
35.7 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ASU01243.1 | MF428478_p68 | deoxyuridine 5'-triphosphate nucleotidohydrolase | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 38764 | 39282 |
| ASU01230.1 | MF428478_p55 | hypothetical protein | phrog_433 | unknown function | unknown function | 1 | 35466 | 35684 |
| ASU01205.1 | MF428478_p30 | hypothetical protein | phrog_6988 | unknown function | unknown function | -1 | 24341 | 24748 |
| ASU01187.1 | MF428478_p12 | hypothetical protein | phrog_176 | tail terminator | connector | 1 | 7945 | 8340 |
| ASU01201.1 | MF428478_p26 | hypothetical protein | phrog_7919 | unknown function | unknown function | 1 | 22055 | 22369 |
| ASU01191.1 | MF428478_p16 | tail length tape-measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 9848 | 12967 |
| ASU01200.1 | MF428478_p25 | hypothetical protein | phrog_635 | endolysin | lysis | 1 | 21066 | 21821 |
| ASU01229.1 | MF428478_p54 | hypothetical protein | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 35051 | 35473 |
| ASU01177.1 | MF428478_p2 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 441 | 1715 |
| ASU01245.1 | MF428478_p70 | hypothetical protein | phrog_35325 | unknown function | unknown function | 1 | 39492 | 39758 |
| ASU01182.1 | MF428478_p7 | major capsid protein | phrog_544 | major head protein | head and packaging | 1 | 5487 | 6398 |
| ASU01178.1 | MF428478_p3 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 1727 | 3172 |
| ASU01241.1 | MF428478_p66 | hypothetical protein | phrog_7797 | unknown function | unknown function | 1 | 38355 | 38621 |
| ASU01244.1 | MF428478_p69 | hypothetical protein | phrog_278 | transcriptional regulator | transcription regulation | 1 | 39346 | 39495 |
| ASU01246.1 | MF428478_p71 | TPR domain protein | phrog_36 | transcriptional regulator | transcription regulation | 1 | 39759 | 40184 |
| ASU01228.1 | MF428478_p53 | hypothetical protein | phrog_3161 | unknown function | unknown function | 1 | 34846 | 35067 |
| ASU01215.1 | MF428478_p40 | hypothetical protein | phrog_31666 | unknown function | unknown function | -1 | 28126 | 28353 |
| ASU01196.1 | MF428478_p21 | minor capsid protein | phrog_6183 | minor tail protein | tail | 1 | 17090 | 18361 |
| ASU01218.1 | MF428478_p43 | hypothetical protein | phrog_369 | unknown function | unknown function | 1 | 29359 | 29535 |
| ASU01240.1 | MF428478_p65 | hypothetical protein | phrog_4872 | unknown function | unknown function | 1 | 38177 | 38338 |
| ASU01223.1 | MF428478_p48 | single-stranded DNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 31205 | 31795 |
| ASU01224.1 | MF428478_p49 | hypothetical protein | phrog_398 | unknown function | unknown function | 1 | 31809 | 32477 |
| ASU01242.1 | MF428478_p67 | hypothetical protein | phrog_14113 | unknown function | unknown function | 1 | 38622 | 38771 |
| ASU01234.1 | MF428478_p59 | hypothetical protein | phrog_258 | virulence associated | other | 1 | 36646 | 36897 |
| ASU01210.1 | MF428478_p35 | Cro-like repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 26930 | 27166 |
| ASU01221.1 | MF428478_p46 | hypothetical protein | phrog_253 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 30097 | 30582 |
| ASU01208.1 | MF428478_p33 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 25934 | 26389 |
| ASU01219.1 | MF428478_p44 | hypothetical protein | phrog_401 | unknown function | unknown function | 1 | 29617 | 29877 |
| ASU01220.1 | MF428478_p45 | hypothetical protein | phrog_25786 | unknown function | unknown function | 1 | 29889 | 30113 |
| ASU01227.1 | MF428478_p52 | DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 33605 | 34849 |
| ASU01214.1 | MF428478_p39 | hypothetical protein | phrog_16714 | unknown function | unknown function | 1 | 27962 | 28129 |
| ASU01204.1 | MF428478_p29 | hypothetical protein | phrog_419 | unknown function | unknown function | 1 | 24147 | 24344 |
| ASU01216.1 | MF428478_p41 | antirepressor protein | phrog_463 | anti-repressor | transcription regulation | 1 | 28431 | 29150 |
| ASU01213.1 | MF428478_p38 | hypothetical protein | phrog_845 | unknown function | unknown function | 1 | 27662 | 27856 |
| ASU01237.1 | MF428478_p62 | hypothetical protein | phrog_14320 | unknown function | unknown function | 1 | 37331 | 37582 |
| ASU01238.1 | MF428478_p63 | hypothetical protein | phrog_467 | unknown function | unknown function | 1 | 37582 | 37962 |
| ASU01198.1 | MF428478_p23 | bifunctional autolysin | phrog_759 | tail associated cell-wall hydrolase | other | 1 | 18892 | 20781 |
| ASU01184.1 | MF428478_p9 | hypothetical protein | phrog_132 | head-tail adaptor | connector | 1 | 6949 | 7281 |
| ASU01232.1 | MF428478_p57 | hypothetical protein | phrog_13457 | unknown function | unknown function | 1 | 36000 | 36164 |
| ASU01180.1 | MF428478_p5 | hypothetical protein | phrog_1865 | unknown function | unknown function | 1 | 4514 | 4708 |
| ASU01231.1 | MF428478_p56 | hypothetical protein | phrog_201 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | 1 | 35695 | 36003 |
| ASU01203.1 | MF428478_p28 | integrase | phrog_1 | integrase | integration and excision | -1 | 22983 | 24032 |
| ASU01195.1 | MF428478_p20 | minor structural protein | phrog_5240 | tail fiber protein | tail | 1 | 16030 | 17073 |
| ASU01181.1 | MF428478_p6 | capsid and scaffold protein | phrog_172 | head scaffolding protein | head and packaging | 1 | 4861 | 5469 |
| ASU01199.1 | MF428478_p24 | holin | phrog_297 | holin | lysis | 1 | 20799 | 21053 |
| ASU01179.1 | MF428478_p4 | hypothetical protein | phrog_115 | minor head protein | head and packaging | 1 | 3165 | 4514 |
| ASU01206.1 | MF428478_p31 | hypothetical protein | phrog_7395 | unknown function | unknown function | -1 | 24742 | 25179 |
| ASU01202.1 | MF428478_p27 | hypothetical protein | phrog_7090 | unknown function | unknown function | 1 | 22494 | 22709 |
| ASU01236.1 | MF428478_p61 | hypothetical protein | phrog_4074 | unknown function | unknown function | 1 | 37083 | 37334 |
| ASU01176.1 | MF428478_p1 | terminase small subunit | phrog_51 | terminase small subunit | head and packaging | 1 | 11 | 454 |
| ASU01233.1 | MF428478_p58 | hypothetical protein | phrog_1689 | nucleotide kinase | other | 1 | 36164 | 36649 |
| ASU01189.1 | MF428478_p14 | hypothetical protein | phrog_183 | tail chaperone protein | tail | 1 | 9071 | 9451 |
| ASU01217.1 | MF428478_p42 | hypothetical protein | phrog_989 | unknown function | unknown function | 1 | 29147 | 29371 |
| ASU01194.1 | MF428478_p19 | hypothetical protein | phrog_8437 | unknown function | unknown function | 1 | 15326 | 16018 |
| ASU01207.1 | MF428478_p32 | hypothetical protein | phrog_19348 | unknown function | unknown function | -1 | 25224 | 25877 |
| ASU01193.1 | MF428478_p18 | minor structural protein | phrog_326 | tail protein with endopeptidase domain | other | 1 | 13925 | 15322 |
| ASU01239.1 | MF428478_p64 | hypothetical protein | phrog_12537 | unknown function | unknown function | 1 | 37964 | 38176 |
| ASU01225.1 | MF428478_p50 | replication initiation protein | phrog_186 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 32477 | 33274 |
| ASU01183.1 | MF428478_p8 | major tail protein | phrog_341 | major tail protein | tail | 1 | 6488 | 6937 |
| ASU01192.1 | MF428478_p17 | hypothetical protein | phrog_33 | distal tail protein Dit | tail | 1 | 12980 | 13912 |
| ASU01209.1 | MF428478_p34 | CI-like repressor | phrog_8 | transcriptional regulator | transcription regulation | -1 | 26406 | 26735 |
| ASU01212.1 | MF428478_p37 | hypothetical protein | phrog_1090 | unknown function | unknown function | -1 | 27342 | 27605 |
| ASU01235.1 | MF428478_p60 | hypothetical protein | phrog_3683 | unknown function | unknown function | 1 | 36901 | 37086 |
| ASU01197.1 | MF428478_p22 | hypothetical protein | phrog_3700 | unknown function | unknown function | 1 | 18394 | 18768 |
| ASU01222.1 | MF428478_p47 | DNA single-strand annealing protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 30582 | 31208 |
| ASU01226.1 | MF428478_p51 | hypothetical protein | phrog_2289 | helicase loader | DNA, RNA and nucleotide metabolism | 1 | 33271 | 33612 |
| ASU01211.1 | MF428478_p36 | hypothetical protein | phrog_12362 | unknown function | unknown function | 1 | 27177 | 27338 |
| ASU01188.1 | MF428478_p13 | tail protein | phrog_238 | major tail protein | tail | 1 | 8358 | 9011 |
| ASU01190.1 | MF428478_p15 | hypothetical protein | phrog_441 | tail assembly chaperone | tail | 1 | 9481 | 9831 |
| ASU01185.1 | MF428478_p10 | hypothetical protein | phrog_348 | minor head protein | head and packaging | 1 | 7278 | 7583 |
| ASU01186.1 | MF428478_p11 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 7583 | 7933 |