Genomic map of Staphylococcus phage SN13 (MF428478)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
MF428478
Definition
Staphylococcus phage SN13, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
DB of origin
NUCCORE
Length
40462
Host Name
Staphylococcus pseudintermedius
Host domain
Bacteria
Is prophage?
undef
Number of proteins
71
%GC
35.7
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ASU01243.1 MF428478_p68 deoxyuridine 5'-triphosphate nucleotidohydrolase phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 38764 39282
ASU01230.1 MF428478_p55 hypothetical protein phrog_433 unknown function unknown function 1 35466 35684
ASU01205.1 MF428478_p30 hypothetical protein phrog_6988 unknown function unknown function -1 24341 24748
ASU01187.1 MF428478_p12 hypothetical protein phrog_176 tail terminator connector 1 7945 8340
ASU01201.1 MF428478_p26 hypothetical protein phrog_7919 unknown function unknown function 1 22055 22369
ASU01191.1 MF428478_p16 tail length tape-measure protein phrog_58 tail length tape measure protein tail 1 9848 12967
ASU01200.1 MF428478_p25 hypothetical protein phrog_635 endolysin lysis 1 21066 21821
ASU01229.1 MF428478_p54 hypothetical protein phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 35051 35473
ASU01177.1 MF428478_p2 terminase large subunit phrog_2 terminase large subunit head and packaging 1 441 1715
ASU01245.1 MF428478_p70 hypothetical protein phrog_35325 unknown function unknown function 1 39492 39758
ASU01182.1 MF428478_p7 major capsid protein phrog_544 major head protein head and packaging 1 5487 6398
ASU01178.1 MF428478_p3 portal protein phrog_64 portal protein head and packaging 1 1727 3172
ASU01241.1 MF428478_p66 hypothetical protein phrog_7797 unknown function unknown function 1 38355 38621
ASU01244.1 MF428478_p69 hypothetical protein phrog_278 transcriptional regulator transcription regulation 1 39346 39495
ASU01246.1 MF428478_p71 TPR domain protein phrog_36 transcriptional regulator transcription regulation 1 39759 40184
ASU01228.1 MF428478_p53 hypothetical protein phrog_3161 unknown function unknown function 1 34846 35067
ASU01215.1 MF428478_p40 hypothetical protein phrog_31666 unknown function unknown function -1 28126 28353
ASU01196.1 MF428478_p21 minor capsid protein phrog_6183 minor tail protein tail 1 17090 18361
ASU01218.1 MF428478_p43 hypothetical protein phrog_369 unknown function unknown function 1 29359 29535
ASU01240.1 MF428478_p65 hypothetical protein phrog_4872 unknown function unknown function 1 38177 38338
ASU01223.1 MF428478_p48 single-stranded DNA-binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 31205 31795
ASU01224.1 MF428478_p49 hypothetical protein phrog_398 unknown function unknown function 1 31809 32477
ASU01242.1 MF428478_p67 hypothetical protein phrog_14113 unknown function unknown function 1 38622 38771
ASU01234.1 MF428478_p59 hypothetical protein phrog_258 virulence associated other 1 36646 36897
ASU01210.1 MF428478_p35 Cro-like repressor phrog_3 transcriptional repressor transcription regulation 1 26930 27166
ASU01221.1 MF428478_p46 hypothetical protein phrog_253 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 30097 30582
ASU01208.1 MF428478_p33 hypothetical protein phrog_87 metallo-protease other -1 25934 26389
ASU01219.1 MF428478_p44 hypothetical protein phrog_401 unknown function unknown function 1 29617 29877
ASU01220.1 MF428478_p45 hypothetical protein phrog_25786 unknown function unknown function 1 29889 30113
ASU01227.1 MF428478_p52 DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 33605 34849
ASU01214.1 MF428478_p39 hypothetical protein phrog_16714 unknown function unknown function 1 27962 28129
ASU01204.1 MF428478_p29 hypothetical protein phrog_419 unknown function unknown function 1 24147 24344
ASU01216.1 MF428478_p41 antirepressor protein phrog_463 anti-repressor transcription regulation 1 28431 29150
ASU01213.1 MF428478_p38 hypothetical protein phrog_845 unknown function unknown function 1 27662 27856
ASU01237.1 MF428478_p62 hypothetical protein phrog_14320 unknown function unknown function 1 37331 37582
ASU01238.1 MF428478_p63 hypothetical protein phrog_467 unknown function unknown function 1 37582 37962
ASU01198.1 MF428478_p23 bifunctional autolysin phrog_759 tail associated cell-wall hydrolase other 1 18892 20781
ASU01184.1 MF428478_p9 hypothetical protein phrog_132 head-tail adaptor connector 1 6949 7281
ASU01232.1 MF428478_p57 hypothetical protein phrog_13457 unknown function unknown function 1 36000 36164
ASU01180.1 MF428478_p5 hypothetical protein phrog_1865 unknown function unknown function 1 4514 4708
ASU01231.1 MF428478_p56 hypothetical protein phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 35695 36003
ASU01203.1 MF428478_p28 integrase phrog_1 integrase integration and excision -1 22983 24032
ASU01195.1 MF428478_p20 minor structural protein phrog_5240 tail fiber protein tail 1 16030 17073
ASU01181.1 MF428478_p6 capsid and scaffold protein phrog_172 head scaffolding protein head and packaging 1 4861 5469
ASU01199.1 MF428478_p24 holin phrog_297 holin lysis 1 20799 21053
ASU01179.1 MF428478_p4 hypothetical protein phrog_115 minor head protein head and packaging 1 3165 4514
ASU01206.1 MF428478_p31 hypothetical protein phrog_7395 unknown function unknown function -1 24742 25179
ASU01202.1 MF428478_p27 hypothetical protein phrog_7090 unknown function unknown function 1 22494 22709
ASU01236.1 MF428478_p61 hypothetical protein phrog_4074 unknown function unknown function 1 37083 37334
ASU01176.1 MF428478_p1 terminase small subunit phrog_51 terminase small subunit head and packaging 1 11 454
ASU01233.1 MF428478_p58 hypothetical protein phrog_1689 nucleotide kinase other 1 36164 36649
ASU01189.1 MF428478_p14 hypothetical protein phrog_183 tail chaperone protein tail 1 9071 9451
ASU01217.1 MF428478_p42 hypothetical protein phrog_989 unknown function unknown function 1 29147 29371
ASU01194.1 MF428478_p19 hypothetical protein phrog_8437 unknown function unknown function 1 15326 16018
ASU01207.1 MF428478_p32 hypothetical protein phrog_19348 unknown function unknown function -1 25224 25877
ASU01193.1 MF428478_p18 minor structural protein phrog_326 tail protein with endopeptidase domain other 1 13925 15322
ASU01239.1 MF428478_p64 hypothetical protein phrog_12537 unknown function unknown function 1 37964 38176
ASU01225.1 MF428478_p50 replication initiation protein phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 32477 33274
ASU01183.1 MF428478_p8 major tail protein phrog_341 major tail protein tail 1 6488 6937
ASU01192.1 MF428478_p17 hypothetical protein phrog_33 distal tail protein Dit tail 1 12980 13912
ASU01209.1 MF428478_p34 CI-like repressor phrog_8 transcriptional regulator transcription regulation -1 26406 26735
ASU01212.1 MF428478_p37 hypothetical protein phrog_1090 unknown function unknown function -1 27342 27605
ASU01235.1 MF428478_p60 hypothetical protein phrog_3683 unknown function unknown function 1 36901 37086
ASU01197.1 MF428478_p22 hypothetical protein phrog_3700 unknown function unknown function 1 18394 18768
ASU01222.1 MF428478_p47 DNA single-strand annealing protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 30582 31208
ASU01226.1 MF428478_p51 hypothetical protein phrog_2289 helicase loader DNA, RNA and nucleotide metabolism 1 33271 33612
ASU01211.1 MF428478_p36 hypothetical protein phrog_12362 unknown function unknown function 1 27177 27338
ASU01188.1 MF428478_p13 tail protein phrog_238 major tail protein tail 1 8358 9011
ASU01190.1 MF428478_p15 hypothetical protein phrog_441 tail assembly chaperone tail 1 9481 9831
ASU01185.1 MF428478_p10 hypothetical protein phrog_348 minor head protein head and packaging 1 7278 7583
ASU01186.1 MF428478_p11 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 7583 7933