| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
MF431252 |
Definition |
Salmonella phage vB_SenS_PVP-SE2, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Guernseyvirinae; Jerseyvirus; unclassified Jerseyvirus. |
DB of origin |
NUCCORE |
Length |
42425 |
Host Name |
Salmonella enterica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
60 |
%GC |
49.98 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AST15516.1 | MF431252_p52 | i-spanin | phrog_5672 | Rz-like spanin | lysis | -1 | 35962 | 36087 |
| AST15508.1 | MF431252_p36 | superinfection immunity protein | phrog_1039 | immunity to superinfection | moron, auxiliary metabolic gene and host takeover | 1 | 27317 | 27496 |
| AST15482.1 | MF431252_p7 | endolysin | phrog_7 | endolysin | lysis | -1 | 1667 | 2155 |
| AST15472.1 | MF431252_p51 | scaffold protein | phrog_206 | head scaffolding protein | head and packaging | -1 | 35176 | 35877 |
| AST15514.1 | MF431252_p4 | hypothetical protein | phrog_4684 | unknown function | unknown function | -1 | 991 | 1146 |
| AST15486.1 | MF431252_p9 | hypothetical protein | phrog_1040 | peptidase HslV family | other | -1 | 2785 | 3219 |
| AST15481.1 | MF431252_p32 | hypothetical protein | phrog_384 | virion structural protein | head and packaging | -1 | 23538 | 24038 |
| AST15507.1 | MF431252_p6 | hypothetical protein | phrog_2180 | unknown function | unknown function | -1 | 1298 | 1483 |
| AST15492.1 | MF431252_p34 | hypothetical protein | phrog_4557 | unknown function | unknown function | -1 | 26366 | 26725 |
| AST15502.1 | MF431252_p38 | hypothetical protein | phrog_2452 | unknown function | unknown function | 1 | 28686 | 28916 |
| AST15506.1 | MF431252_p47 | hypothetical protein | phrog_4451 | unknown function | unknown function | -1 | 33189 | 33377 |
| AST15511.1 | MF431252_p27 | hypothetical protein | phrog_5915 | unknown function | unknown function | 1 | 17759 | 17929 |
| AST15503.1 | MF431252_p18 | DNA-binding helix-turn-helix domain protein | phrog_3 | transcriptional repressor | transcription regulation | -1 | 8134 | 8352 |
| AST15483.1 | MF431252_p20 | HNH endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 9054 | 9536 |
| AST15479.1 | MF431252_p46 | hypothetical protein | phrog_477 | head-tail adaptor Ad1 | connector | -1 | 32676 | 33185 |
| AST15488.1 | MF431252_p43 | tail protein | phrog_169 | tail completion or Neck1 protein | connector | -1 | 31317 | 31712 |
| AST15517.1 | MF431252_p54 | hypothetical protein | phrog_14923 | unknown function | unknown function | -1 | 36502 | 36621 |
| AST15463.1 | MF431252_p17 | primase/helicase | phrog_3228 | replicative helicase-primase | DNA, RNA and nucleotide metabolism | 1 | 5933 | 8119 |
| AST15505.1 | MF431252_p25 | hypothetical protein | phrog_4879 | unknown function | unknown function | 1 | 15109 | 15300 |
| AST15478.1 | MF431252_p31 | hypothetical protein | phrog_396 | minor tail protein | tail | -1 | 23026 | 23541 |
| AST15495.1 | MF431252_p48 | neck whiskers protein | phrog_4069 | Hoc-like head decoration | head and packaging | -1 | 33414 | 33764 |
| AST15480.1 | MF431252_p60 | terminase small subunit | phrog_3064 | terminase | head and packaging | -1 | 41880 | 42386 |
| AST15465.1 | MF431252_p58 | portal protein | phrog_145 | portal protein | head and packaging | -1 | 39137 | 40606 |
| AST15468.1 | MF431252_p41 | major tail protein | phrog_290 | minor tail protein | tail | -1 | 29729 | 30898 |
| AST15459.1 | MF431252_p23 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 11605 | 14703 |
| AST15496.1 | MF431252_p8 | holin class I | phrog_2508 | holin | lysis | -1 | 2136 | 2423 |
| AST15477.1 | MF431252_p19 | hypothetical protein | phrog_3127 | unknown function | unknown function | 1 | 8486 | 9010 |
| AST15515.1 | MF431252_p39 | hypothetical protein | phrog_32218 | unknown function | unknown function | -1 | 28884 | 29030 |
| AST15462.1 | MF431252_p33 | tail tape measure protein | phrog_1538 | tail length tape measure protein | tail | -1 | 24040 | 26373 |
| AST15475.1 | MF431252_p22 | hypothetical protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 10921 | 11547 |
| AST15460.1 | MF431252_p29 | tail fiber protein | phrog_469 | tail protein | tail | -1 | 20115 | 22673 |
| AST15493.1 | MF431252_p44 | hypothetical protein | phrog_161 | head closure Hc1 | connector | -1 | 31709 | 32068 |
| AST15464.1 | MF431252_p28 | tailspike protein | phrog_1819 | tail spike protein | tail | -1 | 18048 | 20102 |
| AST15500.1 | MF431252_p16 | hypothetical protein | phrog_5169 | unknown function | unknown function | 1 | 5643 | 5876 |
| AST15467.1 | MF431252_p21 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 9589 | 10839 |
| AST15476.1 | MF431252_p45 | hypothetical protein | phrog_3614 | unknown function | unknown function | -1 | 32068 | 32673 |
| AST15501.1 | MF431252_p1 | hypothetical protein | phrog_10134 | unknown function | unknown function | -1 | 95 | 325 |
| AST15518.1 | MF431252_p13 | hypothetical protein | phrog_16814 | unknown function | unknown function | -1 | 4230 | 4337 |
| AST15474.1 | MF431252_p57 | amidase | phrog_6095 | amidase | lysis | 1 | 38457 | 39107 |
| AST15497.1 | MF431252_p24 | restriction endonuclease | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 14790 | 15077 |
| AST15470.1 | MF431252_p50 | coat protein | phrog_247 | major head protein | head and packaging | -1 | 34123 | 35172 |
| AST15494.1 | MF431252_p3 | hypothetical protein | phrog_268 | unknown function | unknown function | -1 | 638 | 994 |
| AST15504.1 | MF431252_p11 | hypothetical protein | phrog_3766 | unknown function | unknown function | -1 | 3605 | 3808 |
| AST15490.1 | MF431252_p10 | hypothetical protein | phrog_4947 | unknown function | unknown function | -1 | 3225 | 3602 |
| AST15512.1 | MF431252_p12 | hypothetical protein | phrog_9384 | unknown function | unknown function | -1 | 3871 | 4035 |
| AST15461.1 | MF431252_p26 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 15297 | 17762 |
| AST15469.1 | MF431252_p37 | hypothetical protein | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | 1 | 27559 | 28689 |
| AST15510.1 | MF431252_p15 | DNA-binding helix-turn-helix domain protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 5476 | 5646 |
| AST15491.1 | MF431252_p30 | hypothetical protein | phrog_329 | minor tail protein | tail | -1 | 22664 | 23029 |
| AST15473.1 | MF431252_p40 | DNA-binding protein | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 29029 | 29700 |
| AST15466.1 | MF431252_p59 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | -1 | 40619 | 41890 |
| AST15499.1 | MF431252_p2 | membrane protein | phrog_2531 | unknown function | unknown function | -1 | 342 | 620 |
| AST15485.1 | MF431252_p55 | neck whiskers protein | phrog_3945 | Hoc-like head decoration | head and packaging | -1 | 36776 | 37234 |
| AST15489.1 | MF431252_p53 | o-spanin | phrog_2536 | Rz-like spanin | lysis | -1 | 36071 | 36457 |
| AST15487.1 | MF431252_p42 | hypothetical protein | phrog_179 | tail terminator | connector | -1 | 30898 | 31317 |
| AST15509.1 | MF431252_p14 | hypothetical protein | singleton | unknown function | unknown function | -1 | 4405 | 4581 |
| AST15471.1 | MF431252_p56 | head morphogenesis protein | phrog_241 | head morphogenesis | head and packaging | -1 | 37237 | 38280 |
| AST15513.1 | MF431252_p5 | hypothetical protein | phrog_3002 | unknown function | unknown function | -1 | 1143 | 1301 |
| AST15484.1 | MF431252_p35 | tail assembly chaperone | phrog_313 | Tail assembly chaperone | tail | -1 | 26731 | 27204 |
| AST15498.1 | MF431252_p49 | head protein | phrog_4366 | head fiber protein | head and packaging | -1 | 33778 | 34062 |